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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1360 fasta sequence
[TCATCTTCGCTCTCGCTTTCCCGTGTAAGCCGGAGGAACGGGCGGCCGGCCTTCTCTCCCCGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTGCAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCTATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCATCCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATGGCTGAGGATGCTTTTATCTGTGCACTAATGATTCATAGTT]
[+] EMBL AK103291 [TCATCTTCGCTCTCGCTTTCCCGTGTAAGCCGGAGGAACGGGCGGCCGGCCTTCTCTCCCCGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGA AGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTGCAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCTATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCATCCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTT ]
[+] EMBL CB656706 [ ACGGGCGGCCGGCCTTCTCTCCCCGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTGCAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCTATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGGATCAACCTCCGATGGTTTC ]
[+] EMBL AU222866 [ GCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGNCGGAATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAANTACAGAGCAGAATCACTTGTTAANGACTACCTTCTTGCANATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATNCTGATGTGCAAAATGGTCTATGACATCA ]
[-] EMBL CB656707 [ AGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCATCCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATGGCTGAGGATGCTTTTATCTGTGCACTAATGATTCATAGTT]
[+] EMBL AU225100 [ gccgctTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTAC ]
consensusID : consensus_9671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence
[GTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCACAAAAAAAAAAAAAAAAAA]
[+] EMBL CA765862 [GTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCACAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9671#0 TCATCTTCGCTCTCGCTTTCCCGTGTAAGCCGGAGGAACGGGCGGCCGGCCTTCTCTCCC 60
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGC 120
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTC 180
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 AGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGG 240
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 AATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAG 300
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTG 360
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCT 420
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 ATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAA 480
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACAT 540
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAG 600
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCA 660
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTC 720
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGT 780
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGT 840
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGT 900
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACT 960
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGC 1020
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGA 1080
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 AGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCAT 1140
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACT 1200
consensus_9671#1 ------GTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACT 54
******************************************************
consensus_9671#0 CATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGA 1260
consensus_9671#1 CATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGA 114
************************************************************
consensus_9671#0 AAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATG 1320
consensus_9671#1 AAATTTTTGTCACAAAAAAAAAAAAAAAAAA----------------------------- 145
*********** * * * *
consensus_9671#0 GCTGAGGATGCTTTTATCTGTGCACTAATGATTCATAGTT 1360
consensus_9671#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||