|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence
[GCATCAGCTATTATTTTCTGCATCAATGATGAGGTTGAAGGCTTCCAAGGCAATGGTTGGTGGCTAGGGGTGATTACTGATGTTCATCCTGAATTTAGATATACATTTAAGGCAGCACACTCAGGAAAGGAGATTCAATTGGACCAAAAGGCACTTAGACTTCGGTATGACTGGACCCATGATCAGTGGCAACAAGTTACACAGAATGTGACAAAAAAATTTGCCAAAGGCAGCAAGGTCGAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAATATGTTAACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACTCCTTTGACAGAAGCCATAGAAGTGCAGCACGTCAGACCCTGTCCTCCAGATATCCCTGTAACCAGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGGTGGGTTGGTGTGATATCCAAGGTTAACAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGACTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCATGACTACATGAGCATATGCTTTCTATGTTTGAGATATGTTTTTAGTTCTGCATTCAAAAGTAGTGGGATTGAATTGAGAGTA]
[+] EMBL AK058597 [GCATCAGCTATTATTTTCTGCATCAATGATGAGGTTGAAGGCTTCCAAGGCAATGGTTGGTGGCTAGGGGTGATTACTGATGTTCATCCTGAATTTAGATATACATTTAAGGCAGCACACTCAGGAAAGGAGATTCAATTGGACCAAAAGGCACTTAGACTTCGGTATGACTGGACCCATGATCAGTGGCAACAAGTTACACAGAATGTGACAAAAAAATTTGCCAAAGGCAGCAAGGTCGAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAATATGTTAACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACTCCTTTGACAGAAGCCATAGAAGTGCAGCACGTCAGACCCTGTCCTCCAGATATCCCTGTAACCAGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGGTGGGTTGGTGTGATATCCAAGGTTAACAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGGCTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCATGACTACATGAGCATATGCTTTCTATGTTTGAGATATGTTTTTAGTTCTGCATTCAAAAGTAGTGGGATTGAATTGAGAGTA]
[-] EMBL CB964798 [ CAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGACTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGA ]
[-] EMBL CB966253 [ CAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGACTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGA ]
consensusID : consensus_9672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[AGACCCTGTCGCTCCGAGATATCCCCTGTAACCACGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGTGGTTGGTGTGATATCCCAGGTTAACACGTGGTGACAGGTACACTGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACACGTTAAGACTTCACCTGCGATTGGGTGGTGGAAGGTGGATCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACCATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCCACGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACCAAAAAAAAAA]
[+] EMBL BI801196 [AGACCCTGTCGCTCCGAGATATCCCCTGTAACCACGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGTGGTTGGTGTGATATCCCAGGTTAACACGTGGTGACAGGTACACTGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACACGTTAAGACTTCACCTGCGATTGGGTGGTGGAAGGTGGATCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACCATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCCACGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACCAAAAAAAAAA]
consensusID : consensus_9672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence
[GTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGGCGTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTTGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCANGACTAAAAAAAAAAAA]
[+] EMBL BQ906508 [GTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGGCGTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTTGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCANGACTAAAAAAAAAAAA]
[-] EMBL AU225105 [ ccgcTCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACAgcggc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9672#0 GCATCAGCTATTATTTTCTGCATCAATGATGAGGTTGAAGGCTTCCAAGGCAATGGTTGG 60
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 ------------------------------------------------------------
consensus_9672#0 TGGCTAGGGGTGATTACTGATGTTCATCCTGAATTTAGATATACATTTAAGGCAGCACAC 120
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 ------------------------------------------------------------
consensus_9672#0 TCAGGAAAGGAGATTCAATTGGACCAAAAGGCACTTAGACTTCGGTATGACTGGACCCAT 180
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 ------------------------------------------------------------
consensus_9672#0 GATCAGTGGCAACAAGTTACACAGAATGTGACAAAAAAATTTGCCAAAGGCAGCAAGGTC 240
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 ------------------------------------------------------------
consensus_9672#0 GAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAA 300
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 ------------------------------------------------------------
consensus_9672#0 TATGTTAACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACT 360
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 ------------------------------------------------------------
consensus_9672#0 CCTTTGACAGAAGCCATAGAAGTGCAGCACGTCAGACCCTGTCCTCCAGATATCCCTGTA 420
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 -----------------------------AGACCCTGTCGCTCCGAGATATCCCCTGTAA 31
consensus_9672#0 ACCAGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGGTGGGTT 480
consensus_9672#2 ------------------------------------------------------------
consensus_9672#1 CCACGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGTGGTTGG 91
consensus_9672#0 GGTGTGATATCCAAGGTTAACAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACA 540
consensus_9672#2 --------------------------------------------------GTCTTCTACA 10
consensus_9672#1 TGTGATATCCCAGGTTAACACGTGGTGACAGGTACACTGGTATACTTCAGGTCTTCTACA 151
**********
consensus_9672#0 GAAGAGACTGAGTTCGGGCATGAACA-GTTAAGAC-TTCACTGCGATTGGGTGGGTGGAA 598
consensus_9672#2 GAAGAGACTGAGTTCGGGCATGAACA-GTTAAGGCGTTCACTGCGATTGGGTGGGTGGAA 69
consensus_9672#1 GAAGAGACTGAGTTCGGGCATGAACACGTTAAGACTTCACCTGCGATTGGGTGG-TGGAA 210
************************** ****** * * ************** *****
consensus_9672#0 GGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTT 658
consensus_9672#2 GGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTT 129
consensus_9672#1 GGTGGAT-CGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACCATTT 269
******* *********************************************** ****
consensus_9672#0 TGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTAT 718
consensus_9672#2 TGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTTGCTAACATCATCCTTGTTAT 189
consensus_9672#1 TGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTAT 329
************************* ************* ********************
consensus_9672#0 TGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCC 778
consensus_9672#2 TGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCC 249
consensus_9672#1 TGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCC 389
************************************************************
consensus_9672#0 ACCA--GCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTT 836
consensus_9672#2 ACCA--GCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTT 307
consensus_9672#1 ACCCACGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTT 449
*** ******************************************************
consensus_9672#0 TGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATT 896
consensus_9672#2 TGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATT 367
consensus_9672#1 TGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATT 509
************************************************************
consensus_9672#0 CTAATTTAGGGTGACATAACTCTTATTTCATGACTACATGAGCATATGCTTTCTATGTTT 956
consensus_9672#2 CTAATTTAGGGTGACATAACTCTTATTTCANGACTAAAAAAAAAAAA------------- 414
consensus_9672#1 CTAATTTAGGGTGACCAAAAAAAAAA---------------------------------- 535
*************** ** *
consensus_9672#0 GAGATATGTTTTTAGTTCTGCATTCAAAAGTAGTGGGATTGAATTGAGAGTA 1008
consensus_9672#2 ----------------------------------------------------
consensus_9672#1 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||