These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1020 fasta sequence [AATTCGTTGCGCAAATTGATTGAGATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTGCTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAAATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTGACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAAGTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAAATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAATAAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATATAAAGAGTACAAACAACACTTAGTACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCAACTCTTCATGTTTTTGCCATGTACAAATAGGTCTTACTTGCTGAAATGTAGTAATACACAAAATAAAATGGTTCGGAATTGGTTAGTAAAAAAAAAAAAAAAAAAAAAACAC] [+] EMBL CB000849 [AATTCGTTGCGCAAATTGATTGAGATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTGCTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAAATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTGACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAAGTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAAATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAATAAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAG ] [+] EMBL CF321958 [ GATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTGCTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAAATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTGACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAAGTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAAATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAATAAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGGGCTCAAGT ] [-] EMBL CF321959 [ GTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATATAAAGAGTACAAACAACACTTAGTACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCAACTCTTCATGTTTTTGCCATGTACAAATAGGTCTTACTTGCTGAAATGTAGTAATACACAAAATAAAATGGTTCGGAATTGGTTAGTAAAAAAAAAAAAAAAAAAAAAACAC] [-] EMBL BI305681 [ GCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGTACAAACAACACTTAGTACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCAACTCTTCATGTTTTTGCCATGTACAAATAGGTCTTACTTGCTGAAATGTAGTAATACACAAAATAAAATGGTTCGGga ] consensusID : consensus_9675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [GAATTCCCGGTCGACCCACGCGTCCGGCAAACATGACATTCCGGCTGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTTAGCATATGGGTGGCCGATCAGATGAGTTTGATCCACTCAAGGTTTGCAGAGGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCCAAGGTGGCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCACGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGTACAAACAACACTTAGTACCTGCAGAAATGTACAGCAAAATAAAATGGTTTGCACTCTTCATGTTTTTGCCATGTACAATAGGTCTTACTTGCCTGAAATGTAGTAATACACAAATAAAATGGTTCGGAAAAAAA] [+] EMBL BI813361 [GAATTCCCGGTCGACCCACGCGTCCGGCAAACATGACATTCCGGCTGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTTAGCATATGGGTGGCCGATCAGATGAGTTTGATCCACTCAAGGTTTGCAGAGGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCCAAGGTGGCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCACGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGTACAAACAACACTTAGTACCTGCAGAAATGTACAGCAAAATAAAATGGTTTGCACTCTTCATGTTTTTGCCATGTACAATAGGTCTTACTTGCCTGAAATGTAGTAATACACAAATAAAATGGTTCGGAAAAAAA] consensusID : consensus_9675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTGGCCCTTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGCGTCCTATGTTCATGCGCCGATGCATGGAGTCACACTCCAACCCCAGTACGGTGCTCAAGTTCTTGCCCATAAGATTTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGTAAATATGGTGTATGCAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGTACAAACAACTCTTAATACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCGAGCGGC] [-] EMBL AU225657 [TGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTGGCCCTTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGCGTCCTATGTTCATGCGCCGATGCATGGAGTCACACTCCAACCCCAGTACGGTGCTCAAGTTCTTGCCCATAAGATTTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGTAAATATGGTGTATGCAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGTACAAACAACTCTTAATACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCGAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9675#0 AATTCGTTGCGCAAATTGATTGAGATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTG 60 consensus_9675#1 ------------------------------------------------------------ consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 CTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAA 120 consensus_9675#1 ------------------------------------------------------------ consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 ATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTG 180 consensus_9675#1 ------------------------------------------------------------ consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 ACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAA 240 consensus_9675#1 ------------------------------------------------------------ consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 GTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAA 300 consensus_9675#1 ------------------------------------------------------------ consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 ATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAAT 360 consensus_9675#1 ------------------------------------------------------------ consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 AAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTC 420 consensus_9675#1 -GAATTCCCGGTCGACCCA-CGCGTCCGGCAAACATGACATTCCGGCTG-CACGCAGCTC 57 consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 CAGTTGCCTATTCTTGACATTCATCATGATGTT-AGCATATGGGGTGCCGATGCAGATGA 479 consensus_9675#1 CAGTTGCCTATTCTTGACATTCATCATGATGTTTAGCATATGGGTGGCCGAT-CAGATGA 116 consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 GTTTGATCCA-TCAAGGTTTGCAGAGGG-CAAGAGCTATCACCTTGGCGCATACTTCCCC 537 consensus_9675#1 GTTTGATCCACTCAAGGTTTGCAGAGGGGCAAGAGCTATCACCTTGGCGCATACTTCCCC 176 consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 TTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTG 597 consensus_9675#1 TTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCCAAGGTG 236 consensus_9675#2 -----------------------TGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTG 37 **************** * ********** ****** consensus_9675#0 GCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCA 657 consensus_9675#1 GCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCA 296 consensus_9675#2 GCCCTTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGC-GTCCTATGTTCATGCG 96 ******************* *** ***************** * ** *********** consensus_9675#0 CCAATGCTTGTAGTCACACTCCAACCCCA-GTATGGTGCTCAAGTTCTTGTCCATAAGAT 716 consensus_9675#1 CCAATGCTTGTAGTCACACTCCAACCCCACGTATGGTGCTCAAGTTCTTGTCCATAAGAT 356 consensus_9675#2 CCGATGCATGGAGTCACACTCCAACCCCA-GTACGGTGCTCAAGTTCTTGCCCATAAGAT 155 ** **** ** ****************** *** **************** ********* consensus_9675#0 TTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTG---- 772 consensus_9675#1 TTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTT-CAGTAAGTATGGTG---- 411 consensus_9675#2 TTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGTAAATATGGTGTATG 215 **************** ******************* *** ****** ******* consensus_9675#0 -----------------------------------AACGATTT-GGAAGGATGTTTCCAG 796 consensus_9675#1 -----------------------------------AACGATTT-GGAAGGATGTTTCCAG 435 consensus_9675#2 CAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAG 275 *** **** **************** consensus_9675#0 CTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATATAAAGAGT 856 consensus_9675#1 CTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGT 495 consensus_9675#2 CTCGTCTGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGT 335 ******************** ********* ******************** * ** consensus_9675#0 ACAAACAACACTTAGTACCTGCAGAAATGTACAG-AAAATAAAATGGTTTGCAACTCTTC 915 consensus_9675#1 ACAAACAACACTTAGTACCTGCAGAAATGTACAGCAAAATAAAATGGTTTGCA-CTCTTC 554 consensus_9675#2 ACAAACAACTCTTAATACCTGCAGAAATGTACAG-AAAATAAAATGGTTTGCGAGCGGC- 393 ********* **** ******************* ***************** consensus_9675#0 ATGTTTTTGCCATGTACAAATAGGTCTTACTTGC-TGAAATGTAGTAATACACAAAATAA 974 consensus_9675#1 ATGTTTTTGCCATGTACAA-TAGGTCTTACTTGCCTGAAATGTAGTAATACACAAA-TAA 612 consensus_9675#2 ------------------------------------------------------------ consensus_9675#0 AATGGTTCGGAATTGGTTAGTAAAAAAAAAAAAAAAAAAAAAACAC 1020 consensus_9675#1 AATGGTTCGGAAAAAAA----------------------------- 629 consensus_9675#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||