These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 896 fasta sequence [TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGGCTGGGGAATCTTGGGGGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCATTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTATTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATAAGGGTTCCTAACCCAACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAAACAAAAATCAC] [+] EMBL BE040140 [TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTAGCTTGTTCTTGGCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGGCTGGGGAATCTTGGGGGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCATTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTATTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATAAGGGTTCCTAACCCAACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAAACAAAAATCAC] [-] EMBL CB630103 [ ACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTAGCTGGGTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTcaaaaaag ] [-] EMBL CB634602 [ TCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATATGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATAaaaaaaaga ] consensusID : consensus_9676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 311 fasta sequence [CCCCGCCGCCACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCCGCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGACGCTTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATTGATCTAGGCTA] [+] EMBL CB634601 [CCCCGCCGCCACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCCGCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGACGCTTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATTGATCTAGGCTA] [+] EMBL CB630102 [ GGCATCCTCCTCCTCTTCGTCCGCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTC ] consensusID : consensus_9676#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CGAGACAAGGGGGGGATGGTGAGTATGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATCATATTCTTATTGNTTTGTAAAAAAAAAAAAAAAA] [-] EMBL CA760140 [CGAGACAAGGGGGGGATGGTGAGTATGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATCATATTCTTATTGNTTTGTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9676#0 TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGA 60 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 AGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCC 120 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 CACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTC 180 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 CTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTA 240 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 GCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATC 300 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 CAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGT 360 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 --------------------------------------------------CCCCGCCGCC 10 consensus_9676#0 CTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGA 420 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCCGCTGAGTATA 70 consensus_9676#0 TGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAA 480 consensus_9676#2 -------------CGAGACAAG---GGGGGGATGGTGAGTATGATATGTTGGGCATGTAA 44 consensus_9676#1 GCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGG--GAAG 128 ** * * * ** ** * **** * * consensus_9676#0 TGGTTGGGTAT--GGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGAT 538 consensus_9676#2 TGGTTGGGTAT--GGCGGAAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGAT 102 consensus_9676#1 TGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTG--CTGCTTCGACCCCTGCC 186 *** * ** ** ** * * ** * * * ** *** * * ** consensus_9676#0 TA---------GCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGT 589 consensus_9676#2 TA---------GCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGT 153 consensus_9676#1 CACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGACGC 246 * * * ** * *** * * ** * *** * consensus_9676#0 GTGCATAT----GCTATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGG 645 consensus_9676#2 GTGCATAT----GCTATCATATTCTTATTGNTTTGTAAAAAAAAAAAAAAAA-------- 201 consensus_9676#1 TTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATTGATCTA 306 * ** * * * ** * * * ** * * consensus_9676#0 CTGGGGAATCTTGGGGGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCA 705 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 GGCTA------------------------------------------------------- 311 consensus_9676#0 TTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTA 765 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 TTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATA 825 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 AGGGTTCCTAACCCAACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAA 885 consensus_9676#2 ------------------------------------------------------------ consensus_9676#1 ------------------------------------------------------------ consensus_9676#0 ACAAAAATCAC 896 consensus_9676#2 ----------- consensus_9676#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||