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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1937 fasta sequence
[ATACCACTGAGCAATTGCAACCATTCCATTCCATTCGATCCATTCTAGCTAGCTTATCTCCTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGTTTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGCTGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCAGGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGGTGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGAAGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGCTGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATGACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGGATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCCAGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGGAAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGTTCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCGACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGAGCCCCGTGCTGCTGCTCATGGGCGGTGGGATGGGCGCCGGCAAGAGCACCGTGCTCAAGGAGATTCTCCAGGAGCCACTGTGGTCCAAGGACGAGGCGAATGCGGTGGTGGTTGAGGCGGATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACGACATGCTCCAGACTGCTGAGCTGGTGCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGAACGAGGGTCGTGACGTCATCCTCGACGGTACCCTCTCCTGGGAGCCGTTCGTCCAGCAGACCATCGCCATGGCGCGCGACGTCCACCGCCGCCGCTACCGCATGGGCCCCGGCTACAAGGTCGACCCCGACACCGGCGACATCACCGAGAACTACTGGGAGCCCGCCGACGCCGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCGGCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGGGGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCCGGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCATCCATAAAAAAATATTT]
[+] EMBL AK099948 [ATACCACTGAGCAATTGCAACCATTCCATTCCATTCGATCCATTCTAGCTAGCTTATCTCCTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGTTTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGCTGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCAGGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGGTGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGAAGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGCTGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATGACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGGATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCCAGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGGAAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGTTCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCGACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGAGCCCCGTGCTGCTGCTCATGGGCGGTGGGATGGGCGCCGGCAAGAGCACCGTGCTCAAGGAGATTCTCCAGGAGCCACTGTGGTCCAAGGACGAGGCGAATGCGGTGGTGGTTGAGGCGGATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACGACATGCTCCAGACTGCTGAGCTGGTGCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGAACGAGGGTCGTGACGTCATCCTCGACGGTACCCTCTCCTGGGAGCCGTTCGTCCAGCAGACCATCGCCATGGCGCGCGACGTCCACCGCCGCCGCTACCGCATGGGCCCCGGCTACAAGGTCGACCCCGACACCGGCGACATCACCGAGAACTACTGGGAGCCCGCCGACGCCGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCGGCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGGGGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCCGGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCATCCATAAAAAAATATTT]
[+] EMBL CB679014 [ ATTCTCTCTAGCTTATCTCCTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGTTTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGCTGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCAGGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGGTGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGAAGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGCTGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATGACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGGATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCCAGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGGAAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGTTCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCGACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGAGCCCCGTGCTGCT ]
[-] EMBL CB679015 [ CGCCGACGCNGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCGGCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGGGGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCCGGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCATCCATAAAAAAATATTT]
[-] EMBL OSS0944A [ TGTTCAATATGTTNCCCCAGAAATTAANCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGNCCCCGNAATTGCGNGGCTAGCATCNNTNAAAA ]
consensusID : consensus_9677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence
[TTTNCCCAGAAATTANNNATNTNGGGNNCTAAATTTGTTGTTNATGTGTAANNGGNGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTNGGGTGGCCCCCGNAATTGCGNGGCTAGCATCCATNAAAAAATATTTAAT]
[-] EMBL OSS0934A [TTTNCCCAGAAATTANNNATNTNGGGNNCTAAATTTGTTGTTNATGTGTAANNGGNGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTNGGGTGGCCCCCGNAATTGCGNGGCTAGCATCCATNAAAAAATATTTAAT]
consensusID : consensus_9677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence
[ATTAAANNTGTNNGGNACNAAANTTGTTGTTGATGTGTAAAGGGNGTGTATTNATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCCGCAATTGCGCGGCTAGCATCCTTNAANAAATATTTAAT]
[-] EMBL OSS1071A [ATTAAANNTGTNNGGNACNAAANTTGTTGTTGATGTGTAAAGGGNGTGTATTNATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCCGCAATTGCGCGGCTAGCATCCTTNAANAAATATTTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9677#0 ATACCACTGAGCAATTGCAACCATTCCATTCCATTCGATCCATTCTAGCTAGCTTATCTC 60
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 CTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGT 120
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGC 180
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCA 240
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 GGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGG 300
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGA 360
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 AGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGC 420
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATG 480
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 ACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGG 540
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 ATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCC 600
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 AGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGG 660
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 AAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGT 720
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCG 780
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 ACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGA 840
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 GCCCCGTGCTGCTGCTCATGGGCGGTGGGATGGGCGCCGGCAAGAGCACCGTGCTCAAGG 900
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 AGATTCTCCAGGAGCCACTGTGGTCCAAGGACGAGGCGAATGCGGTGGTGGTTGAGGCGG 960
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 ATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACG 1020
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 ACATGCTCCAGACTGCTGAGCTGGTGCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGC 1080
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TGGTGACGGCGCTGAACGAGGGTCGTGACGTCATCCTCGACGGTACCCTCTCCTGGGAGC 1140
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 CGTTCGTCCAGCAGACCATCGCCATGGCGCGCGACGTCCACCGCCGCCGCTACCGCATGG 1200
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 GCCCCGGCTACAAGGTCGACCCCGACACCGGCGACATCACCGAGAACTACTGGGAGCCCG 1260
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 CCGACGCCGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCG 1320
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 GCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGG 1380
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 GGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCC 1440
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 GGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGG 1500
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 CGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGT 1560
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 TCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCT 1620
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 ACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGC 1680
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 CGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGC 1740
consensus_9677#2 ------------------------------------------------------------
consensus_9677#1 ------------------------------------------------------------
consensus_9677#0 CGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAA 1800
consensus_9677#2 -----------------------------------------------------------A 1
consensus_9677#1 ------------------------------------------------TTTNCCCAGAAA 12
*
consensus_9677#0 TTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGG 1860
consensus_9677#2 TTAAANNTGTNNGGNACNAAANTTGTTGTTGATGTGTAAAGGGNGTGTATTNATTTGTGG 61
consensus_9677#1 TTANNNATNTNGGGNNCTAAATTTGTTGTTNATGTGTAANNGGNGTGTATTAATTTGTGG 72
*** * * ** * *** ******** ******** ** ******* ********
consensus_9677#0 TAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCA 1920
consensus_9677#2 TAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCC-CGCAATTGCGCGGCTAGCA 120
consensus_9677#1 TAAATGGATGTGCTTATTATATGAACTAGTNGGGTGGCCCCCGNAATTGCGNGGCTAGCA 132
****************************** ********* ** ******* ********
consensus_9677#0 TCCATAAAAAAATATTT--- 1937
consensus_9677#2 TCCTTNAANAAATATTTAAT 140
consensus_9677#1 TCCATNAAAAAATATTTAAT 152
*** * ** ********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||