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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1506 fasta sequence
[TCTCGAGTAGCCATGGGCATGGAGGAGGAGGGGGTGGCGCGCGGCGGCGGCGGCAAGAAGCTCGCGCTCGCCAGCATCGGCTTCGCGGACGTCCGTGTCGGCGCCGTGGCTGGCGGCGGCGGCGCCGGCGCCGGCGGCGGGTACAAGGAGGACTTGTTAGTCGTGGGCCTGCCCAAGGACGACGACTTCGATGTCGCCAAGGTCGTCGGGGACGTGGCCGTCGGGCTCCCGGACGTCGGCGCCGCCGTCAGGAATTTCCTGAGGAATAGAGAAGTTGGAGAATTCGTGAGTGGGGCATTAGCT-GGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTTGTTGGGGTAGGATCAAAACACATTTTTGGTAGTTTTGTGGAGATCGTCGAACAAAATGGCTGGCAAGGACTCTGGGCAGGTAATACAATAAATATGCTTCGGATTATTCCAACTCAAGCACTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGAAATGGAAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGAAAATTGAGCTACCACTTCACTTG-CTCTCTCCAATTGCTGTTGGTGGTGCGGCTGCTGGAATAGTTAGCACCTTAGTGTGCCATCCTCTTGAGGTTCTTAAGGACCGCCTGACTGTCAACCGTGAGGCTTATCCAAGTATCGGCCTTGCCTTCAACAAGATATACCAAACTGATGGTATTGGTGGTCTCTATGCTGGCCTCTGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACGATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTCATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCCTTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACCGCGGATGGGCCGCAAGCTCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGACATTCTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTTCAACATGGCAGGCATTGCTACAGAATAAATTTCTTGTGCTGTGAGGCAGTGTGGGATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGTGAAATTCCCCAAGTAATGAAGAAAAGGGGGTTAATTCCCAAGAAAAAAAAAA]
[+] EMBL AK063556 [TCTCGAGTAGCCATGGGCATGGAGGAGGAGGGGGTGGCGCGCGGCGGCGGCGGCAAGAAGCTCGCGCTCGCCAGCATCGGCTTCGCGGACGTCCGTGTCGGCGCCGTGGCTGGCGGCGGCGGCGCCGGCGCCGGCGGCGGGTACAAGGAGGACTTGTTAGTCGTGGGCCTGCCCAAGGACGACGACTTCGATGTCGCCAAGGTCGTCGGGGACGTGGCCGTCGGGCTCCCGGACGTCGGCGCCGCCGTCAGGAATTTCCTGAGGAATAGAGAAGTTGGAGAATTCGTGAGTGGGGCATTAGCT GGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTTGTTGGGGTAGGATCAAAACACATTTTTGGTAGTTTTGTGGAGATCGTCGAACAAAATGGCTGGCAAGGACTCTGGGCAGGTAATACAATAAATATGCTTCGGATTATTCCAACTCAAGCACTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGAAATGGAAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGAAAATTGAGCTACCACTTCACTTG CTCTCTCCAATTGCTGTTGGTGGTGCGGCTGCTGGAATAGTTAGCACCTTAGTGTGCCATCCTCTTGAGGTTCTTAAGGACCGCCTGACTGTCAACCGTGAGGCTTATCCAAGTATCGGCCTTGCCTTCAACAAGATATACCAAACTGATGGTATTGGTGGTCTCTATGCTGGCCTCTGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACGATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTCATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCCTTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACCGCGGATGGGCCGCAAGCTCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGACATTCTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTTCAACATGGCAGGCATTGCTACAGAATAAATTTCTTGTGCTGTGAGGCAGTGTGGGATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGTGAAATTCCCCAAGTAATGAAGAAAAGGGG ]
[+] EMBL C27120 [ GTGAGTGGGGCATTAGCTGGGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTTNTTGGGGTAGGATCAAAACACATTTTTNGTAGTTTTGTGGAGATCGTCGAACAAAATGGCTGGCAAGGACTCTGGGCAGGTAATACANTAAATATGCTTCGGATTATTCCAACTCAAGCACTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGANATGGAAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGANAATTGAGCTACCACTTCACTTGTCTCTCTCCAATTGCTGTTGGTGGTGCGGCT CTGGAATAGTTAGCACCTTAGTGTGCCATCCTCTTNAGGTTCTTAAGGACCGCCTNACTGTC ACCGTGA ]
[+] EMBL BE040472 [ GTCTCTATGCTGGCCTCTGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACGATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTCATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGC ]
[-] EMBL D43531 [ CTATGAGGCAGTGTGGAATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAATCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCC ]
[+] EMBL BI808874 [ ACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAA GGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGTGAAATTCCCCAAGTAATGAAGAAAAGGGGGTTAATTCCCAAGAAAAAAAAAA]
consensusID : consensus_9682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence
[TTGAAATCCCACCACATCCCAGTTCATCTTACTAAGAGCCCACTTTTGTCCCACAATGATTAGAACCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAACCAGTAATTGTTGACAAGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGGGAAATTCCCACAAGTAATGAAGAAAAGGGGTTA]
[+] EMBL BI809090 [TTGAAATCCCACCACATCCCAGTTCATCTTACTAAGAGCCCACTTTTGTCCCACAATGATTAGAACCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAACCAGTAATTGTTGACAAGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGGGAAATTCCCACAAGTAATGAAGAAAAGGGGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9682#0 TCTCGAGTAGCCATGGGCATGGAGGAGGAGGGGGTGGCGCGCGGCGGCGGCGGCAAGAAG 60
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 CTCGCGCTCGCCAGCATCGGCTTCGCGGACGTCCGTGTCGGCGCCGTGGCTGGCGGCGGC 120
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 GGCGCCGGCGCCGGCGGCGGGTACAAGGAGGACTTGTTAGTCGTGGGCCTGCCCAAGGAC 180
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 GACGACTTCGATGTCGCCAAGGTCGTCGGGGACGTGGCCGTCGGGCTCCCGGACGTCGGC 240
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 GCCGCCGTCAGGAATTTCCTGAGGAATAGAGAAGTTGGAGAATTCGTGAGTGGGGCATTA 300
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 GCTGGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTT 360
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 GTTGGGGTAGGATCAAAACACATTTTTGGTAGTTTTGTGGAGATCGTCGAACAAAATGGC 420
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 TGGCAAGGACTCTGGGCAGGTAATACAATAAATATGCTTCGGATTATTCCAACTCAAGCA 480
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 CTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGAAATGG 540
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 AAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGAAAATTGAGCTACCACTTCAC 600
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 TTGCTCTCTCCAATTGCTGTTGGTGGTGCGGCTGCTGGAATAGTTAGCACCTTAGTGTGC 660
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 CATCCTCTTGAGGTTCTTAAGGACCGCCTGACTGTCAACCGTGAGGCTTATCCAAGTATC 720
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 GGCCTTGCCTTCAACAAGATATACCAAACTGATGGTATTGGTGGTCTCTATGCTGGCCTC 780
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 TGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACG 840
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 ATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTC 900
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 ATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCG 960
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 AGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCC 1020
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 TTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACCGCGGATGGGCCGCAAGC 1080
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 TCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGAC 1140
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 ATTCTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTT 1200
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 CAACATGGCAGGCATTGCTACAGAATAAATTTCTTGTGCTGTGAGGCAGTGTGGGATTTC 1260
consensus_9682#1 ------------------------------------------------------------
consensus_9682#0 CTTCTTTTTTTTTTCTTCTTTGAAATCCCAC-ACATGCCAGT-CATCTAGCTAAGAGGCC 1318
consensus_9682#1 -------------------TTGAAATCCCACCACATCCCAGTTCATCTTACTAAGAGCCC 41
************ **** ***** ***** ******* **
consensus_9682#0 A-TTTTGTGCCA--ATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTT 1375
consensus_9682#1 ACTTTTGTCCCACAATGATTAGAACCATTAGTTAATTGGCTTTATTCAACCTGGATTGTT 101
* ****** *** ********** ***********************************
consensus_9682#0 TAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGC 1435
consensus_9682#1 TAA-CCAGTAATTGTTGACAAGGGGG-CAGACATTCCATGCCATGTGGCTTGAGTTATGC 159
*** ********************** *********************************
consensus_9682#0 ATTGCCCCCAAAATTCTGTGAAATTCCC-CAAGTAATGAAGAAAAGGGGGTTAATTCCCA 1494
consensus_9682#1 ATTGCCCCCAAAATTCTGGGAAATTCCCACAAGTAATGAAGAAAAGGGG-TTA------- 211
****************** ********* ******************** ***
consensus_9682#0 AGAAAAAAAAAA 1506
consensus_9682#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||