These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1506 fasta sequence [TCTCGAGTAGCCATGGGCATGGAGGAGGAGGGGGTGGCGCGCGGCGGCGGCGGCAAGAAGCTCGCGCTCGCCAGCATCGGCTTCGCGGACGTCCGTGTCGGCGCCGTGGCTGGCGGCGGCGGCGCCGGCGCCGGCGGCGGGTACAAGGAGGACTTGTTAGTCGTGGGCCTGCCCAAGGACGACGACTTCGATGTCGCCAAGGTCGTCGGGGACGTGGCCGTCGGGCTCCCGGACGTCGGCGCCGCCGTCAGGAATTTCCTGAGGAATAGAGAAGTTGGAGAATTCGTGAGTGGGGCATTAGCT-GGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTTGTTGGGGTAGGATCAAAACACATTTTTGGTAGTTTTGTGGAGATCGTCGAACAAAATGGCTGGCAAGGACTCTGGGCAGGTAATACAATAAATATGCTTCGGATTATTCCAACTCAAGCACTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGAAATGGAAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGAAAATTGAGCTACCACTTCACTTG-CTCTCTCCAATTGCTGTTGGTGGTGCGGCTGCTGGAATAGTTAGCACCTTAGTGTGCCATCCTCTTGAGGTTCTTAAGGACCGCCTGACTGTCAACCGTGAGGCTTATCCAAGTATCGGCCTTGCCTTCAACAAGATATACCAAACTGATGGTATTGGTGGTCTCTATGCTGGCCTCTGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACGATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTCATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCCTTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACCGCGGATGGGCCGCAAGCTCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGACATTCTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTTCAACATGGCAGGCATTGCTACAGAATAAATTTCTTGTGCTGTGAGGCAGTGTGGGATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGTGAAATTCCCCAAGTAATGAAGAAAAGGGGGTTAATTCCCAAGAAAAAAAAAA] [+] EMBL AK063556 [TCTCGAGTAGCCATGGGCATGGAGGAGGAGGGGGTGGCGCGCGGCGGCGGCGGCAAGAAGCTCGCGCTCGCCAGCATCGGCTTCGCGGACGTCCGTGTCGGCGCCGTGGCTGGCGGCGGCGGCGCCGGCGCCGGCGGCGGGTACAAGGAGGACTTGTTAGTCGTGGGCCTGCCCAAGGACGACGACTTCGATGTCGCCAAGGTCGTCGGGGACGTGGCCGTCGGGCTCCCGGACGTCGGCGCCGCCGTCAGGAATTTCCTGAGGAATAGAGAAGTTGGAGAATTCGTGAGTGGGGCATTAGCT GGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTTGTTGGGGTAGGATCAAAACACATTTTTGGTAGTTTTGTGGAGATCGTCGAACAAAATGGCTGGCAAGGACTCTGGGCAGGTAATACAATAAATATGCTTCGGATTATTCCAACTCAAGCACTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGAAATGGAAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGAAAATTGAGCTACCACTTCACTTG CTCTCTCCAATTGCTGTTGGTGGTGCGGCTGCTGGAATAGTTAGCACCTTAGTGTGCCATCCTCTTGAGGTTCTTAAGGACCGCCTGACTGTCAACCGTGAGGCTTATCCAAGTATCGGCCTTGCCTTCAACAAGATATACCAAACTGATGGTATTGGTGGTCTCTATGCTGGCCTCTGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACGATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTCATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCCTTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACCGCGGATGGGCCGCAAGCTCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGACATTCTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTTCAACATGGCAGGCATTGCTACAGAATAAATTTCTTGTGCTGTGAGGCAGTGTGGGATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGTGAAATTCCCCAAGTAATGAAGAAAAGGGG ] [+] EMBL C27120 [ GTGAGTGGGGCATTAGCTGGGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTTNTTGGGGTAGGATCAAAACACATTTTTNGTAGTTTTGTGGAGATCGTCGAACAAAATGGCTGGCAAGGACTCTGGGCAGGTAATACANTAAATATGCTTCGGATTATTCCAACTCAAGCACTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGANATGGAAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGANAATTGAGCTACCACTTCACTTGTCTCTCTCCAATTGCTGTTGGTGGTGCGGCT CTGGAATAGTTAGCACCTTAGTGTGCCATCCTCTTNAGGTTCTTAAGGACCGCCTNACTGTC ACCGTGA ] [+] EMBL BE040472 [ GTCTCTATGCTGGCCTCTGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACGATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTCATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCGAGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGC ] [-] EMBL D43531 [ CTATGAGGCAGTGTGGAATTTCCTTCTTTTTTTTTTCTTCTTTGAAATCCCACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAATCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCC ] [+] EMBL BI808874 [ ACACATGCCAGTCATCTAGCTAAGAGGCCATTTTGTGCCAATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAAGCCAGTAATTGTTGACAA GGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGTGAAATTCCCCAAGTAATGAAGAAAAGGGGGTTAATTCCCAAGAAAAAAAAAA] consensusID : consensus_9682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [TTGAAATCCCACCACATCCCAGTTCATCTTACTAAGAGCCCACTTTTGTCCCACAATGATTAGAACCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAACCAGTAATTGTTGACAAGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGGGAAATTCCCACAAGTAATGAAGAAAAGGGGTTA] [+] EMBL BI809090 [TTGAAATCCCACCACATCCCAGTTCATCTTACTAAGAGCCCACTTTTGTCCCACAATGATTAGAACCATTAGTTAATTGGCTTTATTCAACCTGGATTGTTTAACCAGTAATTGTTGACAAGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGCATTGCCCCCAAAATTCTGGGAAATTCCCACAAGTAATGAAGAAAAGGGGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9682#0 TCTCGAGTAGCCATGGGCATGGAGGAGGAGGGGGTGGCGCGCGGCGGCGGCGGCAAGAAG 60 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 CTCGCGCTCGCCAGCATCGGCTTCGCGGACGTCCGTGTCGGCGCCGTGGCTGGCGGCGGC 120 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 GGCGCCGGCGCCGGCGGCGGGTACAAGGAGGACTTGTTAGTCGTGGGCCTGCCCAAGGAC 180 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 GACGACTTCGATGTCGCCAAGGTCGTCGGGGACGTGGCCGTCGGGCTCCCGGACGTCGGC 240 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 GCCGCCGTCAGGAATTTCCTGAGGAATAGAGAAGTTGGAGAATTCGTGAGTGGGGCATTA 300 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 GCTGGTGCTATGACTAAAGCTGTTCTTGCTCCTCTAGAAACTATCAGGACAAGAATGGTT 360 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 GTTGGGGTAGGATCAAAACACATTTTTGGTAGTTTTGTGGAGATCGTCGAACAAAATGGC 420 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 TGGCAAGGACTCTGGGCAGGTAATACAATAAATATGCTTCGGATTATTCCAACTCAAGCA 480 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 CTTGAGCTTGGCACATTTGAGTGTGTCAAAAGGAGCATGACAGAAGCACAAGAGAAATGG 540 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 AAGGAAGATGGGTGCCCAAATATACAAATTGGCAATTTGAAAATTGAGCTACCACTTCAC 600 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 TTGCTCTCTCCAATTGCTGTTGGTGGTGCGGCTGCTGGAATAGTTAGCACCTTAGTGTGC 660 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 CATCCTCTTGAGGTTCTTAAGGACCGCCTGACTGTCAACCGTGAGGCTTATCCAAGTATC 720 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 GGCCTTGCCTTCAACAAGATATACCAAACTGATGGTATTGGTGGTCTCTATGCTGGCCTC 780 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 TGCCCAACACTAGTTGGCATGCTTCCTTATAGCACCTGCTACTATTTCATGTATGAGACG 840 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 ATCAAGACTTCTTATTGCCGTGCACATAAAAAGAAGTCCTTGAGCCGTCCTGAGCTACTC 900 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 ATTATTGGAGCTCTTTCAGGTCTAACTGCAAGTACAATAAGCTTCCCTCTGGAAGTGGCG 960 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 AGGAAGCGGCTTATGGTTGGAACCCTGCAAGGGAAATGCCCGCCCCACATGATCGCGGCC 1020 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 TTAGCTGAGGTGTTCCAAGAGGAGGGCATCAAGGGACTTTACCGCGGATGGGCCGCAAGC 1080 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 TCCCTGAAGGTGATGCCGACCTCCGGCATTACCTGGATGTTCTATGAGGCATGGAAGGAC 1140 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 ATTCTTTTGGCTCCAGAGCTGCACACCTAGCACTAGCAGTCTAGCATGCCTGGAATTGTT 1200 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 CAACATGGCAGGCATTGCTACAGAATAAATTTCTTGTGCTGTGAGGCAGTGTGGGATTTC 1260 consensus_9682#1 ------------------------------------------------------------ consensus_9682#0 CTTCTTTTTTTTTTCTTCTTTGAAATCCCAC-ACATGCCAGT-CATCTAGCTAAGAGGCC 1318 consensus_9682#1 -------------------TTGAAATCCCACCACATCCCAGTTCATCTTACTAAGAGCCC 41 ************ **** ***** ***** ******* ** consensus_9682#0 A-TTTTGTGCCA--ATGATTAGAAGCATTAGTTAATTGGCTTTATTCAACCTGGATTGTT 1375 consensus_9682#1 ACTTTTGTCCCACAATGATTAGAACCATTAGTTAATTGGCTTTATTCAACCTGGATTGTT 101 * ****** *** ********** *********************************** consensus_9682#0 TAAGCCAGTAATTGTTGACAAGGGGGGCAGACATTCCATGCCATGTGGCTTGAGTTATGC 1435 consensus_9682#1 TAA-CCAGTAATTGTTGACAAGGGGG-CAGACATTCCATGCCATGTGGCTTGAGTTATGC 159 *** ********************** ********************************* consensus_9682#0 ATTGCCCCCAAAATTCTGTGAAATTCCC-CAAGTAATGAAGAAAAGGGGGTTAATTCCCA 1494 consensus_9682#1 ATTGCCCCCAAAATTCTGGGAAATTCCCACAAGTAATGAAGAAAAGGGG-TTA------- 211 ****************** ********* ******************** *** consensus_9682#0 AGAAAAAAAAAA 1506 consensus_9682#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||