These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GAGCTAAGGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTCGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACTAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCGCAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGNCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGATGCAATATATAAATAAAAACTATCTATCCATTATTATATACTAAAAGTCCATTNNNNAAAAAATAAATNNAAAATNAANN] [+] EMBL BE041070 [GAGCTAAGGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTCGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACTAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCGCAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGNCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGATGCAATATATAAATAAAAACTATCTATCCATTATTATATACTAAAAGTCCATTNNNNAAAAAATAAATNNAAAATNAANN] consensusID : consensus_9685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 569 fasta sequence [GGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG-CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA-TGCAATATATAAATTAAATTTGTATTACAAACATTATTTATTATATACATGCCACCGCAAGCTATCCCT] [-] EMBL CB967109 [GGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA TGCAATATATAAATTAAATTTGTATTACAAACATTATTTATTATATACATGCCACCGCAAGCTATCCCT] [-] EMBL BI305809 [ AAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA TGCAATATATAAA TAAAATTGTA ] [+] EMBL CB966855 [ CGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGGCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAATGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGGCGGTGCTTGGCGGCGCCGGCGCAGGCGCCAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATANCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGATTGCCATATATAA ] [+] EMBL BU673708 [ CGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCG CCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA TGCAATATATA ] consensusID : consensus_9685#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [GCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGTGCCGTGCCGTCCTTGTGAGGGCTTGGAAGACCGCCGTGAGAGGGCTTGGCCTGAGCCCATCAAGTAAGGTCGTCTGGTGGTGCCTGTTGCTGCCGTGCGTCGACATCTGTCTGGCCGTGAAGAGGCCGTGCGCTGAACGGATTTTTGCCCGCCGGCTGTCAATGGCGTGGCATGAAAATTCCACAACGGGCTTCATAATCCTGGCGCCTGCCGCATGTGGCATNATGCTGGCTGCCGCCTCCTGCCTACCTGTACTAAGTCTTCCCAATGCTGTGGTTACCTGCCGTGTGCTTGCCTGGCGCCTGGCGCAGTGCGCATGGCCGGCATGCTGTGCCTGCATGGGAACAGGGAATGACTGGCTGGTAACTTGGTCTGCCCAGTGTAACTAAAAGTAGCGCCGTATCGATACCCTGCCGTATATACATCTGTGTACACTTGCTAGCTTTGTGTGATGCAATATATA] [+] EMBL CB966431 [GCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGTGCCGTGCCGTCCTTGTGAGGGCTTGGAAGACCGCCGTGAGAGGGCTTGGCCTGAGCCCATCAAGTAAGGTCGTCTGGTGGTGCCTGTTGCTGCCGTGCGTCGACATCTGTCTGGCCGTGAAGAGGCCGTGCGCTGAACGGATTTTTGCCCGCCGGCTGTCAATGGCGTGGCATGAAAATTCCACAACGGGCTTCATAATCCTGGCGCCTGCCGCATGTGGCATNATGCTGGCTGCCGCCTCCTGCCTACCTGTACTAAGTCTTCCCAATGCTGTGGTTACCTGCCGTGTGCTTGCCTGGCGCCTGGCGCAGTGCGCATGGCCGGCATGCTGTGCCTGCATGGGAACAGGGAATGACTGGCTGGTAACTTGGTCTGCCCAGTGTAACTAAAAGTAGCGCCGTATCGATACCCTGCCGTATATACATCTGTGTACACTTGCTAGCTTTGTGTGATGCAATATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9685#0 GAGCTAAGGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATC 60 consensus_9685#1 -------GGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATC 53 consensus_9685#2 ------------------------------GCGAAGAGTGGTCTCCTCCCTCTCACCATC 30 ****************************** consensus_9685#0 CTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACG-GCCGTGCCGTC 119 consensus_9685#1 CTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACG-GCCGTGCCGTC 112 consensus_9685#2 CTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGTGCCGTGCCGTC 90 ************************************************ *********** consensus_9685#0 CTTG-GAGGGCTTGGAAG-CCGCCG-GAGAGGGCTTGGCC-GAGCCCATCAAG-AAGGTC 174 consensus_9685#1 CTTG-GAGGGCTTGGAAG-CCGCCG-GAGAGGGCTTGGCC-GAGCCCATCAAG-AAGGTC 167 consensus_9685#2 CTTGTGAGGGCTTGGAAGACCGCCGTGAGAGGGCTTGGCCTGAGCCCATCAAGTAAGGTC 150 **** ************* ****** ************** ************ ****** consensus_9685#0 GTC-GGTGGTGCC-GTTGCTGCCG-GCGTCGA-ATCTGTC-GGCCG-GAAGAGGCCG-GC 227 consensus_9685#1 GTC-GGTGGTGCC-GTTGCTGCCG-GCGTCGA-ATCTGTC-GGCCG-GAAGAGGCCG-GC 220 consensus_9685#2 GTCTGGTGGTGCCTGTTGCTGCCGTGCGTCGACATCTGTCTGGCCGTGAAGAGGCCGTGC 210 *** ********* ********** ******* ******* ***** ********** ** consensus_9685#0 GATGAA-GGATTTCG--CCGCCGGC-GTCAA-GGC-TGGCA-GAAAATTCCACTA-GGGC 279 consensus_9685#1 GATGAA-GGATTTTG--CCGCCGGC-GTCAA-GGC-TGGCA-GAAAATTCCACAA-GGGC 272 consensus_9685#2 GCTGAACGGATTTTTGCCCGCCGGCTGTCAATGGCGTGGCATGAAAATTCCACAACGGGC 270 * **** ****** ******** ***** *** ***** *********** * **** consensus_9685#0 TTCA-AATCC-GGCGCC-GCCGCATGGG---CAATGCTGGC-GCCGCCTCCG--CCACC- 329 consensus_9685#1 TTCA-AATCC-GGCGCC-GCCGCATGGG---CAATGCTGGC-GCCGCCTCCG--CCACC- 322 consensus_9685#2 TTCATAATCCTGGCGCCTGCCGCATGTGGCATNATGCTGGCTGCCGCCTCCTGCCTACCT 330 **** ***** ****** ******** * ******** ********* * *** consensus_9685#0 GTACTA-GTCTTCCCAA-GCTGTGGTTACC-GCCG-GTGCTTGCC-GGCGCC-GGCGCAG 383 consensus_9685#1 GTACTAAGTCTTCCCAA-GCTGTGGTTACC-GCCG-GTGCTTGCC-GGCGCC-GGCGCAG 377 consensus_9685#2 GTACTAAGTCTTCCCAATGCTGTGGTTACCTGCCGTGTGCTTGCCTGGCGCCTGGCGCAG 390 ****** ********** ************ **** ********* ****** ******* consensus_9685#0 -GCGCA-GGCCGGCA-GCTG-GCCTGCA--GGGACAGGGA-TGACGG--CGGTAACT-GG 433 consensus_9685#1 -GCGCA-GGCCGGCA-GCTG-GCCTGCA--GGGACAGGGA-TGACGG--CGGTAACT-GG 427 consensus_9685#2 TGCGCATGGCCGGCATGCTGTGCCTGCATGGGAACAGGGAATGACTGGCTGGTAACTTGG 450 ***** ******** **** ******* ** ******* **** * ******* ** consensus_9685#0 TC-GNCCAG-GTAACTAAA-GTAGCGCCG-ATCGATACCC-GCCGTATATACATC-GTGT 487 consensus_9685#1 TC-GCCCAG-GTAACTAAA-GTAGCGCCG-ATCGATACCC-GCCGTATATACATC-GTGT 481 consensus_9685#2 TCTGCCCAGTGTAACTAAAAGTAGCGCCGTATCGATACCCTGCCGTATATACATCTGTGT 510 ** * **** ********* ********* ********** ************** **** consensus_9685#0 ACACT-GCTAGCTT-GTGTGATGCAATATATAAATAAAAACTATCTATCCATTATTATAT 545 consensus_9685#1 ACACT-GCTAGCTT-GTGTGATGCAATATATAAATTAAATTTGTATTACAAACATTATTT 539 consensus_9685#2 ACACTTGCTAGCTTTGTGTGATGCAATATATA---------------------------- 542 ***** ******** ***************** consensus_9685#0 ACTAAAAGTCCATTNNNNAAAAAATAAATNNAAAATNAANN 586 consensus_9685#1 ATTATA--TACATGCCACCGCAAGCTATCCCT--------- 569 consensus_9685#2 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||