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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GAGCTAAGGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTCGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACTAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCGCAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGNCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGATGCAATATATAAATAAAAACTATCTATCCATTATTATATACTAAAAGTCCATTNNNNAAAAAATAAATNNAAAATNAANN]
[+] EMBL BE041070 [GAGCTAAGGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTCGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACTAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCGCAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGNCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGATGCAATATATAAATAAAAACTATCTATCCATTATTATATACTAAAAGTCCATTNNNNAAAAAATAAATNNAAAATNAANN]
consensusID : consensus_9685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 569 fasta sequence
[GGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG-CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA-TGCAATATATAAATTAAATTTGTATTACAAACATTATTTATTATATACATGCCACCGCAAGCTATCCCT]
[-] EMBL CB967109 [GGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA TGCAATATATAAATTAAATTTGTATTACAAACATTATTTATTATATACATGCCACCGCAAGCTATCCCT]
[-] EMBL BI305809 [ AAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA TGCAATATATAAA TAAAATTGTA ]
[+] EMBL CB966855 [ CGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGGGCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAATGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGGCGGTGCTTGGCGGCGCCGGCGCAGGCGCCAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATANCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGATTGCCATATATAA ]
[+] EMBL BU673708 [ CGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCG CCTCCACGGCGCCGATCGTGTCACGGCCGTGCCGTCCTTGGAGGGCTTGGAAGCCGCCGGAGAGGGCTTGGCCGAGCCCATCAAGAAGGTCGTCGGTGGTGCCGTTGCTGCCGGCGTCGAATCTGTCGGCCGGAAGAGGCCGGCGATGAAGGATTTTGCCGCCGGCGTCAAGGCTGGCAGAAAATTCCACAAGGGCTTCAAATCCGGCGCCGCCGCATGGGCAATGCTGGCGCCGCCTCCGCCACCGTACTAAGTCTTCCCAAGCTGTGGTTACCGCCGGTGCTTGCCGGCGCCGGCGCAGGCG CAGGCCGGCAGCTGGCCTGCAGGGACAGGGATGACGGCGGTAACTGGTCGCCCAGGTAACTAAAGTAGCGCCGATCGATACCCGCCGTATATACATCGTGTACACTGCTAGCTTGTGTGA TGCAATATATA ]
consensusID : consensus_9685#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[GCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGTGCCGTGCCGTCCTTGTGAGGGCTTGGAAGACCGCCGTGAGAGGGCTTGGCCTGAGCCCATCAAGTAAGGTCGTCTGGTGGTGCCTGTTGCTGCCGTGCGTCGACATCTGTCTGGCCGTGAAGAGGCCGTGCGCTGAACGGATTTTTGCCCGCCGGCTGTCAATGGCGTGGCATGAAAATTCCACAACGGGCTTCATAATCCTGGCGCCTGCCGCATGTGGCATNATGCTGGCTGCCGCCTCCTGCCTACCTGTACTAAGTCTTCCCAATGCTGTGGTTACCTGCCGTGTGCTTGCCTGGCGCCTGGCGCAGTGCGCATGGCCGGCATGCTGTGCCTGCATGGGAACAGGGAATGACTGGCTGGTAACTTGGTCTGCCCAGTGTAACTAAAAGTAGCGCCGTATCGATACCCTGCCGTATATACATCTGTGTACACTTGCTAGCTTTGTGTGATGCAATATATA]
[+] EMBL CB966431 [GCGAAGAGTGGTCTCCTCCCTCTCACCATCCTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGTGCCGTGCCGTCCTTGTGAGGGCTTGGAAGACCGCCGTGAGAGGGCTTGGCCTGAGCCCATCAAGTAAGGTCGTCTGGTGGTGCCTGTTGCTGCCGTGCGTCGACATCTGTCTGGCCGTGAAGAGGCCGTGCGCTGAACGGATTTTTGCCCGCCGGCTGTCAATGGCGTGGCATGAAAATTCCACAACGGGCTTCATAATCCTGGCGCCTGCCGCATGTGGCATNATGCTGGCTGCCGCCTCCTGCCTACCTGTACTAAGTCTTCCCAATGCTGTGGTTACCTGCCGTGTGCTTGCCTGGCGCCTGGCGCAGTGCGCATGGCCGGCATGCTGTGCCTGCATGGGAACAGGGAATGACTGGCTGGTAACTTGGTCTGCCCAGTGTAACTAAAAGTAGCGCCGTATCGATACCCTGCCGTATATACATCTGTGTACACTTGCTAGCTTTGTGTGATGCAATATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9685#0 GAGCTAAGGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATC 60
consensus_9685#1 -------GGGTATAAGCAAAGCAAAGCATGGCGAAGAGTGGTCTCCTCCCTCTCACCATC 53
consensus_9685#2 ------------------------------GCGAAGAGTGGTCTCCTCCCTCTCACCATC 30
******************************
consensus_9685#0 CTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACG-GCCGTGCCGTC 119
consensus_9685#1 CTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACG-GCCGTGCCGTC 112
consensus_9685#2 CTCCTCCTCGCCGTCGCCGCCGCCCTCCACGGCGCCGATCGTGTCACGTGCCGTGCCGTC 90
************************************************ ***********
consensus_9685#0 CTTG-GAGGGCTTGGAAG-CCGCCG-GAGAGGGCTTGGCC-GAGCCCATCAAG-AAGGTC 174
consensus_9685#1 CTTG-GAGGGCTTGGAAG-CCGCCG-GAGAGGGCTTGGCC-GAGCCCATCAAG-AAGGTC 167
consensus_9685#2 CTTGTGAGGGCTTGGAAGACCGCCGTGAGAGGGCTTGGCCTGAGCCCATCAAGTAAGGTC 150
**** ************* ****** ************** ************ ******
consensus_9685#0 GTC-GGTGGTGCC-GTTGCTGCCG-GCGTCGA-ATCTGTC-GGCCG-GAAGAGGCCG-GC 227
consensus_9685#1 GTC-GGTGGTGCC-GTTGCTGCCG-GCGTCGA-ATCTGTC-GGCCG-GAAGAGGCCG-GC 220
consensus_9685#2 GTCTGGTGGTGCCTGTTGCTGCCGTGCGTCGACATCTGTCTGGCCGTGAAGAGGCCGTGC 210
*** ********* ********** ******* ******* ***** ********** **
consensus_9685#0 GATGAA-GGATTTCG--CCGCCGGC-GTCAA-GGC-TGGCA-GAAAATTCCACTA-GGGC 279
consensus_9685#1 GATGAA-GGATTTTG--CCGCCGGC-GTCAA-GGC-TGGCA-GAAAATTCCACAA-GGGC 272
consensus_9685#2 GCTGAACGGATTTTTGCCCGCCGGCTGTCAATGGCGTGGCATGAAAATTCCACAACGGGC 270
* **** ****** ******** ***** *** ***** *********** * ****
consensus_9685#0 TTCA-AATCC-GGCGCC-GCCGCATGGG---CAATGCTGGC-GCCGCCTCCG--CCACC- 329
consensus_9685#1 TTCA-AATCC-GGCGCC-GCCGCATGGG---CAATGCTGGC-GCCGCCTCCG--CCACC- 322
consensus_9685#2 TTCATAATCCTGGCGCCTGCCGCATGTGGCATNATGCTGGCTGCCGCCTCCTGCCTACCT 330
**** ***** ****** ******** * ******** ********* * ***
consensus_9685#0 GTACTA-GTCTTCCCAA-GCTGTGGTTACC-GCCG-GTGCTTGCC-GGCGCC-GGCGCAG 383
consensus_9685#1 GTACTAAGTCTTCCCAA-GCTGTGGTTACC-GCCG-GTGCTTGCC-GGCGCC-GGCGCAG 377
consensus_9685#2 GTACTAAGTCTTCCCAATGCTGTGGTTACCTGCCGTGTGCTTGCCTGGCGCCTGGCGCAG 390
****** ********** ************ **** ********* ****** *******
consensus_9685#0 -GCGCA-GGCCGGCA-GCTG-GCCTGCA--GGGACAGGGA-TGACGG--CGGTAACT-GG 433
consensus_9685#1 -GCGCA-GGCCGGCA-GCTG-GCCTGCA--GGGACAGGGA-TGACGG--CGGTAACT-GG 427
consensus_9685#2 TGCGCATGGCCGGCATGCTGTGCCTGCATGGGAACAGGGAATGACTGGCTGGTAACTTGG 450
***** ******** **** ******* ** ******* **** * ******* **
consensus_9685#0 TC-GNCCAG-GTAACTAAA-GTAGCGCCG-ATCGATACCC-GCCGTATATACATC-GTGT 487
consensus_9685#1 TC-GCCCAG-GTAACTAAA-GTAGCGCCG-ATCGATACCC-GCCGTATATACATC-GTGT 481
consensus_9685#2 TCTGCCCAGTGTAACTAAAAGTAGCGCCGTATCGATACCCTGCCGTATATACATCTGTGT 510
** * **** ********* ********* ********** ************** ****
consensus_9685#0 ACACT-GCTAGCTT-GTGTGATGCAATATATAAATAAAAACTATCTATCCATTATTATAT 545
consensus_9685#1 ACACT-GCTAGCTT-GTGTGATGCAATATATAAATTAAATTTGTATTACAAACATTATTT 539
consensus_9685#2 ACACTTGCTAGCTTTGTGTGATGCAATATATA---------------------------- 542
***** ******** *****************
consensus_9685#0 ACTAAAAGTCCATTNNNNAAAAAATAAATNNAAAATNAANN 586
consensus_9685#1 ATTATA--TACATGCCACCGCAAGCTATCCCT--------- 569
consensus_9685#2 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||