Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9692 cluster # 9692       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9692#0 length = 1640 sequences # 3  
consensus_9692#1 length = 960 sequences # 2  
consensus_9692#2 length = 638 sequences # 1  

consensusID : consensus_9692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1640
fasta sequence
                              [ATCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACCATGGGGATGGAAGCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGGTAATTCCCATGGCATCTGATGTGTTAGTAGTGTGGTATGATGCTTCATGAATTTATACTAGTACTAATGTGCTAGTGTTAGTTATAGAATGTTTATTCATCACCCGGTTCTTTCCAGAAAATATTGTACAGCTTATACCCAATCTTATGGCTTGTTTTCATCTGGAGTGCTCAAGCCTCAAGGGACATACATGTATTACTGCTACTACCACCACTTAACAAGTTACATACTCATTTTCATCTGAATCACAATTCTAATACTTGTTTCTTATGCCCAGTCAACACTAACTTAAACCAGTTACCAGACTGAACATTAGATAACAAATGTCCCAGCTCCCTTATCATACTAGTGGTTAATCTCTCACACGTCATATTAACTTAGAAAGATGCTTTAAATGATAACCAAGTATTACAACTGGTGCCTGATACTCTGATAGAAACCTTTGTTACATTCTAGGACTCGGATAAATGACATCATCTATTATCAACAAGGGATAACTCTTCTGTAGTAGGATATGGATATCCATGTGAGGTCATCAGAGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCACACGGAAGATGACCTGATTTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCTTTTCAGAAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGT-AATAGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTTGTGAATTCAGACTGTTCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGTATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT]

[+] EMBL AK065489             [ATCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACCATGGGGATGGAAGCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGGTAATTCCCATGGCATCTGATGTGTTAGTAGTGTGGTATGATGCTTCATGAATTTATACTAGTACTAATGTGCTAGTGTTAGTTATAGAATGTTTATTCATCACCCGGTTCTTTCCAGAAAATATTGTACAGCTTATACCCAATCTTATGGCTTGTTTTCATCTGGAGTGCTCAAGCCTCAAGGGACATACATGTATTACTGCTACTACCACCACTTAACAAGTTACATACTCATTTTCATCTGAATCACAATTCTAATACTTGTTTCTTATGCCCAGTCAACACTAACTTAAACCAGTTACCAGACTGAACATTAGATAACAAATGTCCCAGCTCCCTTATCATACTAGTGGTTAATCTCTCACACGTCATATTAACTTAGAAAGATGCTTTAAATGATAACCAAGTATTACAACTGGTGCCTGATACTCTGATAGAAACCTTTGTTACATTCTAGGACTCGGATAAATGACATCATCTATTATCAACAAGGGATAACTCTTCTGTAGTAGGATATGGATATCCATGTGAGGTCATCAGAGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCACACGGAAGATGACCTGATTTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCTTTTCAGAAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGT AATAGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTTGTGAATTCAGACTGTTCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGTATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT]
[+] EMBL CF312410             [ TCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACC TGGGGATGGAAGCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGGTAATTCCCATGGCATCTGATGTGTTAGTAGTGTGGTATGATGCTTCATGAATTTATACTAGTACTAATGTGCTAGTGTTAGTTATAGAATGTTTATTCATCACCCGGTTCTTTCCAGAAAATATTGTACAGCTTATACCCAATCTTATGGCTTGTTTTCATCTGGAGTGCTCAAGCCTCAAGGGACATACATGTATTACTGCTACTACCACCACTTAACAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF311364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGTCCAAGTGAAAGCGAAAAAAAGGCCTTTCAGAAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGTAAATAGATTGGGATGGCCTATGGCCGTGATCTAAaaaaaaaaa                                                                                                     ]


>consensus_9692#0 ATCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACCATGGGGATGGAAGCGCC AGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAG TACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTG GAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCG GCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTAC AATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTG GTAATTCCCATGGCATCTGATGTGTTAGTAGTGTGGTATGATGCTTCATGAATTTATACT AGTACTAATGTGCTAGTGTTAGTTATAGAATGTTTATTCATCACCCGGTTCTTTCCAGAA AATATTGTACAGCTTATACCCAATCTTATGGCTTGTTTTCATCTGGAGTGCTCAAGCCTC AAGGGACATACATGTATTACTGCTACTACCACCACTTAACAAGTTACATACTCATTTTCA TCTGAATCACAATTCTAATACTTGTTTCTTATGCCCAGTCAACACTAACTTAAACCAGTT ACCAGACTGAACATTAGATAACAAATGTCCCAGCTCCCTTATCATACTAGTGGTTAATCT CTCACACGTCATATTAACTTAGAAAGATGCTTTAAATGATAACCAAGTATTACAACTGGT GCCTGATACTCTGATAGAAACCTTTGTTACATTCTAGGACTCGGATAAATGACATCATCT ATTATCAACAAGGGATAACTCTTCTGTAGTAGGATATGGATATCCATGTGAGGTCATCAG AGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCACACGGAAGATGACCTGAT TTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCC AAGTGAAAGCGAAAAAAAGGCTTTTCAGAAGACAAGATCAAGTGACTGGACGGTCACAAT GAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGC AGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAAC GCTGTGAACGGCCACTTGGGCTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATG CCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACG CATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGT AGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATA CTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGTAAT AGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTTGTGAATTCAGACTGT TCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGTATGAGGTGATGTTTG ATTCACTAGCAGTCACTGTT



consensusID : consensus_9692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 960
fasta sequence
                              [AGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGGATATGGATATCCATGTGAGGTCATCAGAGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCATACGGAAGATGACCTGATTTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCTTTTCAGGAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGCCT-GAGAACGCTGTGAACGGCCACTT-GGGCTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGTAATAGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTTGTGAATTCAGACTGTTCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGTATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT]

[+] EMBL AK059508             [AGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGGATATGGATATCCATGTGAGGTCATCAGAGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCATACGGAAGATGACCTGATTTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCTTTTCAGGAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGCCT GAGAACGCTGTGAACGGCCACTT GGGCTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGTAATAGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTTGTGAATTCAGACTGTTCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGTATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT]
[+] EMBL BE229544             [                                                                                                                                                                                                                                                                                                                                                                                                              cgagGAGCAAACTCAGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTRCAGCTTCCAGTGACAATGATGAGCTGGTGGCACCGTTCGACACATCCAATGGYCTWGAGAACGCTGTGAACGGCCACTTGGGGCTGCTACCACAGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAATAATTCATCTATTWRCGTTCAGATAACGTTGTMACCATTTCTTTCARTAGCARTAGCTTGCGTCGCTCTCCGNATGAGTTATCTTAAGTCTTTAGCAATTCACTGTAATA                                                                                                                                                                                                            ]


>consensus_9692#1 AGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATG ATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTT GGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTG CACAAACTCCTGGATATGGATATCCATGTGAGGTCATCAGAGTAGCAAGTTGATGGATCA TCGCCATGATGCTATTGCTGCATACGGAAGATGACCTGATTTATCTATAAATGATGCAGT GGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGG CTTTTCAGGAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTA TCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATG AGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAACGCTGTGAACGGCCACTTGGG CTGCTACCCCGGGTGCTTCAGAGACTGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAG GAAATTTGCTGTCAGCATGGCCGATCTCCTTCGGTTCACGCATCAGTAATTCATCTATTT GCGTTCAGATAACGTTGTGACCATTTCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCA TGAGTAATCTTAAGTCTTTGGCAATTCACTGTAATATATACTAATATGCTCTTCCGCGGG GTCCCCCATTTTAATTCTTCAAGCCGGCGAGGTGTGTAATAGATTGGGATGGCCTATGGC CGTGATCTAAGGGCAGTTGATGTTTGTGAATTCAGACTGTTCCTGTCGATGTCATGGAAC GCATTGTGGACTTGTGCTTGGTTGTATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT



consensusID : consensus_9692#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence
                              [TCTCCCACCTCACTGCCTCCCGTATCCCGAATCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACCATGGGGATGGAAGCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCCTTTCAGAAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAAGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTA]

[+] EMBL CF311365             [TCTCCCACCTCACTGCCTCCCGTATCCCGAATCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACCATGGGGATGGAAGCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTGTGGTGCTGATGACCAATGCCATCTCTGCATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCCTTTCAGAAGACAAGATCAAGTGACTGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAAGCTGGTGGCACCGTTCGACACATCCAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTA]


>consensus_9692#2 TCTCCCACCTCACTGCCTCCCGTATCCCGAATCCTACTACCATCCTCCTTTTCGTCCTAT CCTCTCCCAGACCATGGGGATGGAAGCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCC ACTCGTCAAACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCG CCAAGTTCTAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACA GGGTCCATGGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGTGCAAGT GAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCAGA TACACCTGTTGCTCACTGCACAAACTCCTGTGGTGCTGATGACCAATGCCATCTCTGCAT CAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCCTTTCAGAAGACAAGATCAAGTGACTGG ACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATGTGT GGCGCATCTGCAGCTTCCAGTGACAATGATGAAGCTGGTGGCACCGTTCGACACATCCAA TGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9692#0      ATCCTACTACCATCCTCCTTTTCGTCCTATCCTCTCCCAGACCATGGGGATGGAAGCGCC 60
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      AGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCAAACTCCCCTTTTCTTTTTCCAG 120
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      TACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTCTAAACAATGCAGGATTGAGGTG 180
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      GAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCATGGTGGACATGATCAATGTCGCG 240
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      GCACGATGTGCCTTTTTACTTTGTGCAAGTGAGATTTCATATGATGTTGGAGAACGCTAC 300
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      AATTTCGCGAGCATTCTGCTTCATTTCAGATACACCTGTTGCTCACTGCACAAACTCCTG 360
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      GTAATTCCCATGGCATCTGATGTGTTAGTAGTGTGGTATGATGCTTCATGAATTTATACT 420
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      AGTACTAATGTGCTAGTGTTAGTTATAGAATGTTTATTCATCACCCGGTTCTTTCCAGAA 480
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      AATATTGTACAGCTTATACCCAATCTTATGGCTTGTTTTCATCTGGAGTGCTCAAGCCTC 540
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      AAGGGACATACATGTATTACTGCTACTACCACCACTTAACAAGTTACATACTCATTTTCA 600
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      ------------------------------------------TCTCCCACCTCACTGCCT 18
                                                                                  

consensus_9692#0      TCTGAATCACAATTCTAATACTTGTTTCTTATGCCCAGTCAACACTAACTTAAACCAGTT 660
consensus_9692#1      ------------------------------------------------------------
consensus_9692#2      CCCGTATCCCGAATCCTACTACCATC-CTCCTTTTCGTCCTATCCTCTCCCAGACC---- 73
                                                                                  

consensus_9692#0      ACCAGACTGAACATTAGATAACAAATGTCCCAGCTCCCTTATCATACTAGTGGTTAATCT 720
consensus_9692#1      --AGGATTGAGG--TGGAGAACTGCTTCTCC--CTCTCTGAAAATACAGG--GTCCATGG 52
consensus_9692#2      ATGGGGATGGAA-----GCGCCAGATCTACCGGCCCCTCCGAGGTACGCGCCACTCGTCA 128
                          *  **            *   *   **  * *        ***  *       *  

consensus_9692#0      CTCACACGTCATATTAACTTAGAAAGATGCTTTAAATGATAACCAAGTATTAC-AACTGG 779
consensus_9692#1      TGGACATG----ATCAATGTCGCGGCACGATGTGCCTTTTTACTTTGT---GC-AAGTGA 104
consensus_9692#2      AACTCCCCTTTTCTTTTTCCAGTACCCCAAGATCTGTCACCACCGCCTGCCGCCAAGTTC 188
                          *        *       *          *   *    **    *    * ** *  

consensus_9692#0      TGCCTGAT-----ACTCTGATAGAAACCT--TTGTTACATT-CTAGGACTC-GGATAAAT 830
consensus_9692#1      GATTTCAT-----ATGATGTTGGAGAACG--CTACAATTTCGCGAGCATTC-TGCTTCAT 156
consensus_9692#2      TAAACAATGCAGGATTGAGGTGGAGAACTGCTTCTCCCTCTCTGAAAATACAGGGTCCAT 248
                            **     *    * * ** * *    *           *  *  *  * *  **

consensus_9692#0      GACAT---CATCTATTATCAACAAGGGATAACTCTTCTGTAGTAGGATATGGATATCCAT 887
consensus_9692#1      TTCAGATACACCTGTTGCTCACTGCACA-AACTCCT--------GGATATGGATATCCAT 207
consensus_9692#2      GGTGGACATGATCAATGTCGCGGCACGATGTGCCTTTT---------TACTT-TGTGCAA 298
                                     *           *     * *           **    * * ** 

consensus_9692#0      GTGAGGTCATCAGAGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCACACGG 947
consensus_9692#1      GTGAGGTCATCAGAGTAGCAAGTTGATGGATCATCGCCATGATGCTATTGCTGCATACGG 267
consensus_9692#2      GTGAGATTTCATATGATGTTGGAGAACGCTACAATTTCGCGAGCATTCTGCTTCATTTCA 358
                      ***** *       *  *   *   * *   **    *  **   *  **** **     

consensus_9692#0      AAGATGACCTGAT-TTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTG 1006
consensus_9692#1      AAGATGACCTGAT-TTATCTATAAATGATGCAGTGGTGCTGATGACCAATGCCATCTCTG 326
consensus_9692#2      GATAC-ACCTGTTGCTCACTGCACAAACTCCTGTGGTGCTGATGACCAATGCCATCTCTG 417
                       * *  ***** *  *  **  * *   * * ****************************

consensus_9692#0      CATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCTTTTCAGAAGACAAGATCAAGTGAC 1066
consensus_9692#1      CATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCTTTTCAGGAGACAAGATCAAGTGAC 386
consensus_9692#2      CATCAGTCAGGTCCAAGTGAAAGCGAAAAAAAGGCCTTTCAGAAGACAAGATCAAGTGAC 477
                      *********************************** ****** *****************

consensus_9692#0      TGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATG 1126
consensus_9692#1      TGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATG 446
consensus_9692#2      TGGACGGTCACAATGAGAGCAAACTCGGGACTTATCTTTGCCGTGATGATCCTGATAATG 537
                      ************************************************************

consensus_9692#0      TGTGGCGCATCTGCAGCTTCCAGTGACAATGATGA-GCTGGTGGCACCGTTCGACACATC 1185
consensus_9692#1      TGTGGCGCATCTGCAGCTTCCAGTGACAATGATGA-GCTGGTGGCACCGTTCGACACATC 505
consensus_9692#2      TGTGGCGCATCTGCAGCTTCCAGTGACAATGATGAAGCTGGTGGCACCGTTCGACACATC 597
                      *********************************** ************************

consensus_9692#0      CAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTACCCCGGGTGCTTCAGAGAC 1245
consensus_9692#1      CAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTACCCCGGGTGCTTCAGAGAC 565
consensus_9692#2      CAATGGCCTGAGAACGCTGTGAACGGCCACTTGGGCTGCTA------------------- 638
                      *****************************************                   

consensus_9692#0      TGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGAT 1305
consensus_9692#1      TGTGTTACAAGGATGCCTGAATGCTGTTCTGTGAGGAAATTTGCTGTCAGCATGGCCGAT 625
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      CTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATT 1365
consensus_9692#1      CTCCTTCGGTTCACGCATCAGTAATTCATCTATTTGCGTTCAGATAACGTTGTGACCATT 685
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      TCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAAT 1425
consensus_9692#1      TCTTTCAGTAGCAGTAGCTTGCGTCGCTCTCCGCATGAGTAATCTTAAGTCTTTGGCAAT 745
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      TCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCC 1485
consensus_9692#1      TCACTGTAATATATACTAATATGCTCTTCCGCGGGGTCCCCCATTTTAATTCTTCAAGCC 805
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      GGCGAGGTGTGTAATAGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTT 1545
consensus_9692#1      GGCGAGGTGTGTAATAGATTGGGATGGCCTATGGCCGTGATCTAAGGGCAGTTGATGTTT 865
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      GTGAATTCAGACTGTTCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGT 1605
consensus_9692#1      GTGAATTCAGACTGTTCCTGTCGATGTCATGGAACGCATTGTGGACTTGTGCTTGGTTGT 925
consensus_9692#2      ------------------------------------------------------------
                                                                                  

consensus_9692#0      ATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT 1640
consensus_9692#1      ATGAGGTGATGTTTGATTCACTAGCAGTCACTGTT 960
consensus_9692#2      -----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)