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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1588 fasta sequence
[GCGGCCGGCTCTCGCTCGGGTGGTCCTCCGGTGGCGCGGAGGCAGGCAGGGCCTCCTCGTCGGTCGGCGTGCACCCTGACTACCCTCCCGAGGCGGGGGCGGCGGCGGCGGCGGGGGGCGCCTCCGACCTAGCGCATGGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGTCCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTTTGACTGGGTTGGACGGGATGCTTACCATGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGAGCACCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCACCCAGTCACTCTGCAACTGGTGGCACGTACACTCCAAAGGTACCTGATAATGCAAATATACATAGTTATCATCCTCAAAATGGAGCACTAGAACATAACAAAAGCTCAAAGAGTTTGACTAATGATGCATGGCGAACATGGTCCCTTGACAAGGGTGGTTTTTCAGATTTTCAAGCCGCTGAAATCCATTCAACTAACAGCAGGAAATCATTTAGACATGATGGCCTAGACATTCTTGCACAAGATGACGTGCACGGGCCATCTAATGGTGTGGCTGTACATGATTATGATATTAATGATGTAGACTCTGAAAGAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTGCCGCTCTTCATACATTAAGATCAAGATTCGACAAGGTTATATCAGATATGTCCGAAGGTGACAGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGACCAAAGTAATGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGATAATTGAGAAG-ACAAAATAATTGAAGAGANACAAAGAAGGCTTGATGAAGCTGAGAAGGCCTTGAGTGAGCTCCGTACTGTTTATATTGTGTGGTCTAATCCTGCTTCAGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGTCAGAGAAGAATGGAAAGATCAGAAAGAGGCACCTTTTCCTTAAACCTGAGGTTGTATCCTGGTAGATATGAGATTAAATTTATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACACCCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACCCCTTCATGGAATGTGGTTGTACATCTCTTT]
[+] EMBL CB646339 [GCGGCCGGCTCTCGCTCGGGTGGTCCTCCGGTGGCGCGGAGGCAGGCAGGGCCTCCTCGTCGGTCGGCGTGCACCCTGACTACCCTCCCGAGGCGGGGGCGGCGGCGGCGGCGGGGGGCGCCTCCGACCTAGCGCATGGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGTCCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTTTGACTGGGTTGGACGGGATGCTTACCATGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGAGCACCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCACCCAGTCACTCTGCAACTGGTGGCACGTACACTCCAAAGGTACCTGATAATGCAAATATACATAGTTATCATCCTC ]
[+] EMBL CB627058 [ GGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGTCCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTGGGACTGGGTTGGACGGGATGCTTACCAGGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGAGCAGCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCACCCAGTCACTCTGCAACTGGTGGCAGGTATACTCCAAAGGTACCTGATAATGGAAATATACATAGTTATCATCCTCAAAATGGAGCACTAGAACATAACAAAAGCTCAAAGAGTTTGACTAATGATGCATGGCGAACATGGTCCCTTGACAAGGGTGGTTTTTCAGATTTTCAAGCCGCTGAAATCCATTCAACTAACAGCAGGAAATCATTTAGACATGATGGCCTAGACATTCTTGCACAAGATGACGTGCACGGGCCATCTAATGGTGTGGCTGTACATGATTATGATATTAATGATGTAGACTCTGAAAGAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTGCCGCTCTTCATACATTAAGATCAAGATTCGACAAGGTTATATCAGATATGTCCGAAGGTGACAGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGACCAAAGTAATGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGATAATTGAGAAG ACAAAATAATTGAAGAGANACAAAGAAGGCTT ]
[-] EMBL CB627059 [ CAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGATAATTGAGAAGAACAAAATAATTGAAGAGAAACAAAGAAGGCTTGATGAAGCTGAGAAGGCCTTGAGTGAGCTCCGTACTGTTTATATTGTGTGGTCTAATCCTGCTTCAGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGTCAGAGAAGAATGGAAAGATCAGAAAGAGGCACCTTTTCCTTAAACCTGAGGTTGTATCCTGGTAGATATGAGATTAAATTTATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACACCCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACCCCTTCATGGAATGTGGTTGTACATCTCTTT]
[+] EMBL BI808232 [ GTAGATATGAGATTAAATTTATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGA CAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGCCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACACCTTaaaaaa ]
consensusID : consensus_9695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence
[CGTGCCGAATTCGGCACGAGCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTT-TGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTNTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAAGTGTCTGGTTGTACACCTTCA]
[+] EMBL BE230410 [CGTGCCGAATTCGGCACGAGCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTT TGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTNTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAAGTGTCTGGTTGTACACCTTCA]
[+] EMBL BE230387 [CGTGCCGAATTCGGCACGAGCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTCAGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9695#0 GCGGCCGGCTCTCGCTCGGGTGGTCCTCCGGTGGCGCGGAGGCAGGCAGGGCCTCCTCGT 60
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CGGTCGGCGTGCACCCTGACTACCCTCCCGAGGCGGGGGCGGCGGCGGCGGCGGGGGGCG 120
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CCTCCGACCTAGCGCATGGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGT 180
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTTTGACTGGGTTGG 240
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 ACGGGATGCTTACCATGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGA 300
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 GCACCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCAC 360
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CCAGTCACTCTGCAACTGGTGGCACGTACACTCCAAAGGTACCTGATAATGCAAATATAC 420
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 ATAGTTATCATCCTCAAAATGGAGCACTAGAACATAACAAAAGCTCAAAGAGTTTGACTA 480
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 ATGATGCATGGCGAACATGGTCCCTTGACAAGGGTGGTTTTTCAGATTTTCAAGCCGCTG 540
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 AAATCCATTCAACTAACAGCAGGAAATCATTTAGACATGATGGCCTAGACATTCTTGCAC 600
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 AAGATGACGTGCACGGGCCATCTAATGGTGTGGCTGTACATGATTATGATATTAATGATG 660
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TAGACTCTGAAAGAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTG 720
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CCGCTCTTCATACATTAAGATCAAGATTCGACAAGGTTATATCAGATATGTCCGAAGGTG 780
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 ACAGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGACCAAAGTAA 840
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGA 900
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TGGCACTGGAGATAATTGAGAAGACAAAATAATTGAAGAGANACAAAGAAGGCTTGATGA 960
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 AGCTGAGAAGGCCTTGAGTGAGCTCCGTACTGTTTATATTGTGTGGTCTAATCCTGCTTC 1020
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 AGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGTCAGAGAAGAATGGAAAGATC 1080
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 AGAAAGAGGCACCTTTTCCTTAAACCTGAGGTTGTATCCTGGTAGATATGAGATTAAATT 1140
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGAGCAATAACGGGCA 1200
consensus_9695#1 ----CGTGCCGAATTCGGCACGAG-----CTCTGCGCCCCCTTGTGAGCAATAACGGGCA 51
** * * * * ** *******************************
consensus_9695#0 TGAAAACACCCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCAT 1260
consensus_9695#1 TGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCAT 111
******** ***************************************************
consensus_9695#0 TTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGA 1320
consensus_9695#1 TTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGA 171
************************************************************
consensus_9695#0 AACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCT 1380
consensus_9695#1 AACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCT 231
************************************************************
consensus_9695#0 TAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTT 1440
consensus_9695#1 TAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTT 291
************************************************************
consensus_9695#0 GTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCC 1500
consensus_9695#1 GTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTNTTCCC 351
****************************************************** *****
consensus_9695#0 CGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACCCC 1560
consensus_9695#1 CGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAAGTGTCTGGTTGTACACC 411
****************************************** ************** **
consensus_9695#0 TTCATGGAATGTGGTTGTACATCTCTTT 1588
consensus_9695#1 TTCA------------------------ 415
****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||