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Oryza sativa
cluster # 9703 cluster # 9703       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9703#0 length = 956 sequences # 6  

consensusID : consensus_9703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 956
fasta sequence
                              [TTAACCCTCCTAAAGGAATAGCTTGGGCCGCGGCCGCCGCGGCGGGCGCGGATCGGGTGCGGTGGGACTACCGCGGGCAGCGCCAGCTGGTGCCGCTCGGGCAGTGGATGCCCAAGGTGGCCGTCGACGCCTACGTCGCCCCTGAGGCCGTGCTGGCCGGGCAGGTCACCGTCTACGACGGCGCCTCCGTGTGGAGCGGCGCCGTGCTGCGCGGTGACCTCAACAAGATCACCCTCGGCTTCTGCGCCAACGTCCAGGAGCGATGCGTCCTCCACGCCGCCTGGTCGGCGCCCACAGGGCTTCCAGCTGACACCCTTGTTGACCGGTATGTGACAGTGGGTGCATACTGTCTGTTGCGCTCATGCACTATTGAACCTGAGTGCATCATCGGTCAGCATTCCATCCTCATGGAAGGTTCATTGGTTGAAACCAACTCGATCCTTGAAGCTGGCTCTGTCCTGCCCCCTGGAAGGAGGATTCCAACTGGTGAGCTCTGGGCTGGTAATCCAGCTAGGTTTGTTCGGAAGCTAACCAATGAAGAGATCATGGAAATCCCAAAGCTCGCGGTGGCAATCAACGATTTGATGCAAAGCCATTTTTCGGAGTTCCTTCCGTACTCCACTGCTTATTTGGAGGT-GGAGAAGTTGAAGAAATCGTTTTCAATTCCTCTGTA--AGCATGTTTTTTTTGTCACCTTCTCCGCCAAATGAACGAGAAAATAAAGCAGCCCANAGTACCTAGATGTTTTGTATTGAATCTAACTTGTAACTTGGGTGGATGTGTTACGTTGTGAATTTTTCGTTCATTGTTGTTGTCAACTTGGGGACAGGCGTTAAGGACCATGTCTGAATGCATTGCTTTCGCTTCTCACTACCGGTATTTTCCGGCTGGGAAACATACCTTGTGCCATTGAGAAAACATGTACAGTATATTGTGGGATTGTGTCTGGAAAAAAAAA]

[+] EMBL BI305508             [TTAACCCTCCTAAAGGAATAGCTTGGGCCGCGGCCGCCGCGGCGGGCGCGGATCGGGTGCGGTGGGACTACCGCGGGCAGCGCCAGCTGGTGCCGCTCGGGCAGTGGATGCCCAAGGTGGCCGTCGACGCCTACGTCGCCCCTGAGGCCGTGCTGGCCGGGCAGGTCACCGTCTACGACGGCGCCTCCGTGTGGAGCGGCGCCGTGCTGCGCGGTGACCTCAACAAGATCACCCTCGGCTTCTGCGCCAACGTCCAGGAGCGATGCGTCCTCCACGCCGCCTGGTCGGCGCCCACAGGGCTTCCAGCTGACACCCTTGTTGACCGGTATGTGACAGTGGGTGCATACTGTCTGTTGCGCTCATGCACTATTGAACCTGAGTGCATCATCGGTCAGCATTCCATCCTCATGGAAGGTTCATTGGTTGAAACCAACTCGATCCTTGAAGCTGGCTCTGTCCTGCCCCCTGGAAGGAGGATTCCAACTGGTGAGCTCTGGGCTGGTAATCCAGCTAGGTTTGTTCGGAAGCTAACCAATGAAGAGATCATGGAAATCCCAAAGCTCGCGGTGGCAATCAACGATTTGATGCAAAGCCATTTTTCGGAGTTCCTTCCGTACTCCACTGCTTATTTGGAGGT GGAGAAGTTGAAGAAATCGTTTTCAATTCCTCTGNT  AGCATGTTTTTTTTGTCACCTTCTCCGCCAAATGAACGAGAAAATAAAGCAGCCCANAGTACCTAGATGTTTTGTATTGAATCTAACTTGTAACTTGGG                                                                                                                                                                                        ]
[+] EMBL BI306581             [               actaAGCTTGGGCCGCGGCCGCCGCGGCGGGCGCGGATCGGGTGCGGTGGGACTACCGCGGGCAGCGCCAGCTGGTGCCGCTCGGGCAGTGGATGCCCAAGGTGGCCGTCGACGCCTACGTCGCCCCTGAGGCCGTGCTGGCCGGGCAGGTCACCGTCTACGACGGCGCCTCCGTGTGGAGCGGCGCCGTGCTGCGCGGTGACCTCAACAAGATCACCCTCGGCTTCTGCGCCAACGTCCAGGAGCGATGCGTCCTCCACGCCGCCTGGTCGGCGCCCACAGGGCTTCCAGCTGACACCCTTGTTGACCGGTATGTGACAGTGGGTGCATACTGTCTGTTGCGCTCATGCACTATTGAACCTGAGTGCATCATCGGTCAGCATTCCATCCTCATGGAAGGTTCATTGGTTGAAACCAACTCGATCCTTGAAGCTGGCTCTGTCCTGCCCCCTGGAAGGAGGATTCCAACTGGTGAGCTCTGGGCTGGTAATCCAGCTAGGTTTGTTCGGAAGCTAACCAATGAAGAGATCATGGAAATCCCAAAGCTCGCGGTGGCAATCAACGATTTGATGCAAAGCCATTTTTCGGAGTTCCTTCCGTACTCCACTGCTTATTTGGAGGTGGGAGAAGTTGAAGAAATCGTTTTCAATTCCTCTGTA  AGCATGTTTTTTTTGTCACCTTCTNCGCCAAATGAACGAGAAAATAAAGCAGCCCANAGTACCTAGATGTTTTGTATTGAATCTAACTTG                                                                                                                                                                                                 ]
[+] EMBL BI305632             [                                  CGCCGCGGCGGGCGCGGATCGGGTGCGGTGGGACTACCGCGGGCAGCGCCAGCTGGTGCCGCTCGGGCAGTGGATGCCCAAGGTGGCCGTCGACGCCTACGTCGCCCCTGAGGCCGTGCTGGCCGGGCAGGTCACCGTCTACGACGGCGCCTCCGTGTGGAGCGGCGCCGTGCTGCGCGGTGACCTCAACAAGATCACCCTCGGCTTCTGCGCCAACGTCCAGGAGCGATGCGTCCTCCACGCCGCCTGGTCGGCGCCCACAGGGCTTCCAGCTGACACCCTTGTTGACCGGTATGTGACAGTGGGTGCATACTGTCTGTTGCGCTCATGCACTATTGAACCTGAGTGCATCATCGGTCAGCATTCCATCCTCATGGAAGGTTCATTGGTTGAAACCAACTCGATCCTTGAAGCTGGCTCTGTCCTGCCCCCTGGAAGGAGGATTCCAACTGGTGAGCTCTGGGCTGGTAATCCAGCTAGGTTTGTTCGGAAGCTAACCAATGAAGAGATCATGGAAATCCCAAAGCTCGCGGTGGCAATCAACGATTTGATGCAAAGCCATTTTTCGGAGTTCCTTCCGTACTCCACTGCTTATTTGGAGGT GGAGAAGTTGAAGAAATCGTTTTCAATTCCTCTGTA  AGCATGTTTTTTTTGTCACCTTCTCCGCCAAATGAACGAGAAAATAAAGCAGCCCAAAGTACCTAGATGTTTTGTATTGAATCTAACTTGTAACTTTGGTGGATGTGTTA                                                                                                                                                                             ]
[+] EMBL BU673727             [                             tttggCGCCGCGGCGGGCGCGGATCGGGTGCGGTGGGACTACCGCGGGCAGCGCCAGCTGGTGCCGCTCGGGCAGTGGATGCCCAATGTGGCCGTCGACGCCTACGTCGCCCCTGAGGCCGTGCTGGCCGGGCAGGTCACCGTCTACGACGGCGCCTCCGTGTGGAGCGGCGCCGTGCTGCGCGGTGACCTCAACAAGATCACCCTCGGCTTCTGCGCCAACGTCCAGGAGCGATGCGTCCTCCACGCCGCCTGGTCGGCGCCCACAGGGCTTCCAGCTGACACCCTTGTTGACCGGTATGTGACAGTGGGTGCATACTGTCTGGTGCGCTCATGCACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA754050             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTGCTTATTTGGAGGT GGAGAAGTTGAAGAAATCGTTTTCAATTCCTCTGTAAGAGCTCTTTTTTTTTGTCACCTTCTCCGCCAAATGAACGAGAAAATAAAGCAGCCCAAAGTACCTAGATGTTTTGTATTGAATCTAACTTGTAACTTGGGTGGATGTGTTACGTTGTGAATTTTTCGTTCATTGTTGTTGTCAACTTGGGGACAGGCGTTAAGGACCATGTCTGAATGCATTGCTTTCGCTTCTCACTACCGGTATTTTCCGGCTGGGAAACATACCTTGTGCCATTGAGAAAACATGTACAGTATATTGTGGGATTGTGTCTGGAAAAAAAAA]
[+] EMBL CF313738             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGACAGGCGTTAAGGACCATGTCTGAATGCATTGCTTTCGCTTCTCACTACCGGTATTTTCCG                                                                        ]


>consensus_9703#0 TTAACCCTCCTAAAGGAATAGCTTGGGCCGCGGCCGCCGCGGCGGGCGCGGATCGGGTGC GGTGGGACTACCGCGGGCAGCGCCAGCTGGTGCCGCTCGGGCAGTGGATGCCCAAGGTGG CCGTCGACGCCTACGTCGCCCCTGAGGCCGTGCTGGCCGGGCAGGTCACCGTCTACGACG GCGCCTCCGTGTGGAGCGGCGCCGTGCTGCGCGGTGACCTCAACAAGATCACCCTCGGCT TCTGCGCCAACGTCCAGGAGCGATGCGTCCTCCACGCCGCCTGGTCGGCGCCCACAGGGC TTCCAGCTGACACCCTTGTTGACCGGTATGTGACAGTGGGTGCATACTGTCTGTTGCGCT CATGCACTATTGAACCTGAGTGCATCATCGGTCAGCATTCCATCCTCATGGAAGGTTCAT TGGTTGAAACCAACTCGATCCTTGAAGCTGGCTCTGTCCTGCCCCCTGGAAGGAGGATTC CAACTGGTGAGCTCTGGGCTGGTAATCCAGCTAGGTTTGTTCGGAAGCTAACCAATGAAG AGATCATGGAAATCCCAAAGCTCGCGGTGGCAATCAACGATTTGATGCAAAGCCATTTTT CGGAGTTCCTTCCGTACTCCACTGCTTATTTGGAGGTGGAGAAGTTGAAGAAATCGTTTT CAATTCCTCTGTAAGCATGTTTTTTTTGTCACCTTCTCCGCCAAATGAACGAGAAAATAA AGCAGCCCANAGTACCTAGATGTTTTGTATTGAATCTAACTTGTAACTTGGGTGGATGTG TTACGTTGTGAATTTTTCGTTCATTGTTGTTGTCAACTTGGGGACAGGCGTTAAGGACCA TGTCTGAATGCATTGCTTTCGCTTCTCACTACCGGTATTTTCCGGCTGGGAAACATACCT TGTGCCATTGAGAAAACATGTACAGTATATTGTGGGATTGTGTCTGGAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)