cluster # 9705

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Oryza sativa
cluster # 9705 cluster # 9705 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9705#0 length = 990 sequences # 2

consensus_9705#1 length = 435 sequences # 4

consensusID : consensus_9705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 990
fasta sequence

                              [TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCCGCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGTGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTAGCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCGGCGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGG-CGGATGGTGGCGACGCCGCCGCGCCTGCAGGTGGCGGC-GGCGACGCGGCGGCGG-TGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCG-GCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCCGCGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGCGTAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCACGTATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGTGATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTGATGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTGACTGGTTTGTCTTGCCTATGTGACATTCTGA]

[+] EMBL AK100801             [TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCCGCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGTGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTAGCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCGGCGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGG CGGATGGTGGCGACGCCGCCGCGCCTGCAGGTGGCGGC GGCGACGCGGCGGCGG TGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCG GCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCCGCGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGCGTAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCACGTATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGTGATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTGATGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTGACTGGTTTGTCTTGCCTATGTGACATTCTGA]
[+] EMBL CA754984             [                              CGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCCGCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGTGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTTGCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGAAGGGGCTGCGGTGGTGGTGGCGGCGGCGGAGGAGGACGGCGCGGTTGGTGGACGAGAGCGCGCTCGCGGCGGTAGTATGTTGGCGACGACGCCGCGCCTGCAGGTGGCGGCTGACGACGCGGCGGAGGTTGGCGGTGGTGCCGATGTTGAACGGGGGCGCCGCGCTTGCCAGGGCGCTGCTTGCGCTGGCGTGC CCATCCGCTTCGACTGC AAGAAGTCGGTGCCGCTCCCGA TGATTAGGCGT                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_9705#0
TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATG
TCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGA
GGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCG
ATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCC
GCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGT
GCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTAG
CTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCGG
CGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGGCGGATGGTGGCGAC
GCCGCCGCGCCTGCAGGTGGCGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCG
AGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGAC
GGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCCG
CGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGCG
TAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCACG
TATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGTG
ATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTGA
TGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTGA
CTGGTTTGTCTTGCCTATGTGACATTCTGA

consensusID : consensus_9705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 435
fasta sequence

                              [CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGC-G--CCAGCGG]

[-] EMBL BI306400             [CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTTGACGGCGAGGACGGCGGCGCCGGCGCCACGGAGGAGGCGTGGGCGG  CCAGCGG]
[-] EMBL BI305754             [CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGC GGTCCAGCG ]
[-] EMBL CB965137             [         TCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGC Gg        ]
[-] EMBL CB966102             [                                                                                                                                                                                                                                                                              CATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGC CCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCA CATCCGCTTCGACGGCGAGGACGGCGGCGCC GCGCGAC  A GAGGCGT GGC G  CCAG   ]




>consensus_9705#1
CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGC
TTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAA
GTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAG
ATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGA
TTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGG
CGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGG
CGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGG
CGTGGGCGCCAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9705#0      TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATG 60
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      TCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGA 120
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      GGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCG 180
consensus_9705#1      ----------------------------------------------------CTAGCTCG 8
                                                                          **    **

consensus_9705#0      ATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCC 240
consensus_9705#1      ATCAGCTCTGTTCCCTCACTTCCCTGCTTAT-----ATACACGCCCCCCAT-GTGTGCTT 62
                      ***   * *** *   *   *** ***         **   ****  *    ****    

consensus_9705#0      GCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACA-CGTTGTGTGCGTGTG 299
consensus_9705#1      CCTTCCATCCCA--TGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGC-TACA 119
                       *  **  *  *     *** *  *  *   *   ******  * * * **  ** *   

consensus_9705#0      TGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTA 359
consensus_9705#1      AGTGATCGATCGATCGATGTCGTGGT-----GGATGCGGC-AAAGAGGAGTGAGAAGCCA 173
                       * *  **       ** *    * *     ** **  *   ***  *   *   *** *

consensus_9705#0      GCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCG 419
consensus_9705#1      AC---CCAAGATGATGATGGCGGTG----------AGAGGTTGCTGCTGCCG-GGAGGTG 219
                       *   *** *  **   *****  *          ** ** *** *  ** * ** ** *

consensus_9705#0      GCGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGGCGGATGGTGGCGA 479
consensus_9705#1      GTCG-------TGGCGCGAGCCGTG--TGATTGCCTGCTCCT--CCTCCGATCCTGTGTG 268
                      *  *        ****** *  ***   **  **  ****    *  * ***  **    

consensus_9705#0      CGCCGCCGCGCCTGCAGGTGGCGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGC 539
consensus_9705#1      TGCA--TGCGTCTCCGTGCA-CGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGC 325
                       **    *** ** *  *   ***************************************

consensus_9705#0      GAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGA 599
consensus_9705#1      GAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGA 385
                      ************************************************************

consensus_9705#0      CGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCC 659
consensus_9705#1      CGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGCG-CCAGCGG--------- 435
                      ******************************************* *******         

consensus_9705#0      GCGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGC 719
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      GTAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCAC 779
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      GTATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGT 839
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      GATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTG 899
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      ATGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTG 959
consensus_9705#1      ------------------------------------------------------------
                                                                                  

consensus_9705#0      ACTGGTTTGTCTTGCCTATGTGACATTCTGA 990
consensus_9705#1      -------------------------------