These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 668 fasta sequence [TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGTTGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGGGCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCACGGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAATTCCTTTTT] [+] EMBL AK107710 [TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGTTGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGGGCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCACGGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAATT ] [+] EMBL AK103209 [ ATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGTTGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGGGCTGGCGCTGGGGAGGTTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCACGGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCAC ] [+] EMBL BI306616 [ CGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAATTCCTTTTT] [+] EMBL CB965157 [ GAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA ] [+] EMBL CB965983 [ GAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGACGGACTGCGCGTGCCAGTGCTGAGC ] consensusID : consensus_9707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AACCTCACTAAGGGAATAGTGCGGCGCGGCGGCGGCGAGGTGCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA] [+] EMBL CB965195 [AACCTCACTAAGGGAATAGTGCGGCGCGGCGGCGGCGAGGTGCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9707#0 TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGT 60 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 TGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGG 120 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 GCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCAC 180 consensus_9707#1 -------------------------------------------------AACCTCACTAA 11 * ** * * consensus_9707#0 GGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGC 240 consensus_9707#1 GGGAATAGTGCGGCG-----CGGCGGCGGCGAGGTGC-AGTACGACCCGCTCAGCTACGC 65 ** * * *** ***************** ********************** consensus_9707#0 GCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTA 300 consensus_9707#1 GCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTA 125 ************************************************************ consensus_9707#0 CCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCG 360 consensus_9707#1 CCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCG 185 ************************************************************ consensus_9707#0 GCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGT 420 consensus_9707#1 GCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGT 245 *************************************************** ******** consensus_9707#0 GCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCAC 480 consensus_9707#1 GCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCAC 305 ************************************************************ consensus_9707#0 TCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTG 540 consensus_9707#1 TCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTG 365 ************************************************************ consensus_9707#0 GTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCT 600 consensus_9707#1 GTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCT 425 ************************************************************ consensus_9707#0 CTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAAT 660 consensus_9707#1 CTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA-- 483 ********************************************************** consensus_9707#0 TCCTTTTT 668 consensus_9707#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||