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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1220 fasta sequence
[AATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTG-TTAC-GCAGGTGCACTGC-ACTAGTAGTACATAGTAG-AGTATTATATTCTACACGGGCGGCACATTAGTTCG---TTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGC-TACGATTTTCTTCAATATTTCTTACTGCGTGTTGGGATTGATTTGATTCATGTATATAACACG--GTGTCAGTTTGGACATATA--TACATATACAGTAATTTCACTATTCTCATGTTTACTAGCTACTAATCCAAAAATTCCTAATCCAAAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGCCCACAGCGGCAAACTGCCAGCACACACAAAACTA]
[+] EMBL AK059980 [AATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCACACCA CCACGGCGCCACCCTTCAGAGCCCATAAGGACGCCGACCTGGAATCCACGACGCGGCGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTTGTGGTGCTCCTCGTCCTTGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCACCTCGTCTCCACCCGCCTCACCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCACGTCGGTCCAGCTCAACGTCACGCTGCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCACACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTG TTAC GCAGGTGCACTGC ACTAGTAGTACATAGTAG AGTATTATATTCTACACGGGCGGCACATTAGTTCG TTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGC TACGATTTTCTTCAATATTTCTTACTGCGTGTTGGGATTGATTTGATTCATGTATATAACACG GTGTCAGTTTGG ATA T ATATACAGTAATTTCACTATTCT ]
[+] EMBL AK104583 [ TACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCACACCA CCACGGCGCCACCCTTCAGAGCCCATAAGGACGCCGACCTGGAATCCACGACGCGGCGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTTGTGGTGCTCCTCGTCCTTGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCACCTCGTCTCCACCCGCCTCACCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCACGTCGGTCCAGCTCAACGTCACGCTGCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCACACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTG TTAC GCAGGTGCACTGC ACTAGTAGTACATAGTAG AGTATTATATTCTACACGGGCGGCACATTAGTTCG TTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGC TACGATTTTCTTCAATATTTCTTACTGCGTGTTGGGATTGATTTGATTCATGTATATAACACG GTGTCAGTTTGGATATATA TACAgtaa ]
[+] EMBL AK101778 [ AACGGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTCCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTGACGGACGTGATGGGCGGGTCGGTGGCGCTGGAGGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCACATCGCGACGTGGGACAAGACGAGAAGCCATAT TTTGTTGTTTTGTTTACACCACG CAACTGCTACTAGAAGTACATAG AGTATTACTATATTCTACACGGGTGGCACATTAGTTCGTTATTACAGATAGTATAAGATCAGGAATTCAGGATTCAGGACTTCCGATTTTCTTCAGTATTTCTTGATGGGTGTTGGGATTGATTCGATTCATGTATATAACACGGTGTGTCAGTTTTGACATATACGTACATATACA ]
[+] EMBL CA755169 [ AACGGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCNCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGNGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCAAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCCACGTCACCATGGCGCTCACCCT ]
[+] EMBL AK060359 [ GGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTCCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTGACGGACGTGATGGGCGGGTCGGTGGCGCTGGAGGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCACATCGCGACGTGGGACAAGACGAGAAGCCATAT TTTGTTGTTTTGTTTACACCACG CAACTGCTACTAGAAGTACATAG AGTATTACTATATTCTACACGGGTGGCACATTAGTTCGTTATTACAGATAGTATAAGATCAGGAATTCAGGATTCAGGACTTCCGATTTTCTTCAGTATTTCTTGATGGGTGTTGGGATTGATTCGATTCATGTATATAACACGGTGTGTCAGTTTTGACATATACGTACATATACAGT ATTTCACTATTCTCATGTTTACTAGCTACTAATCCAAAAATTCCTAATCCAAAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGCCCACAGCGGCAAACTGCCAGCACACACAAAACTA]
consensusID : consensus_9708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[TTTTTTGTTTACCCACCACTGCTACTAGAAGTAAGTACATAGAGTATTACTATATTCTACCGGTGCACTTAGTTCTATTACGATAGTATAAGATCGGAATTCAGGATTCAGGACTTCCGATTTTCTCTATTTCTGATGGTTTGGGATTGATTCGATTCATGTATATAACCGTGTGCCTTTTTTTTTTTTTTGAAAAACCATTATACGTACATATACGTATTTCCTATT]
[+] EMBL BI794920 [TTTTTTGTTTACCCACCACTGCTACTAGAAGTAAGTACATAGAGTATTACTATATTCTACCGGTGCACTTAGTTCTATTACGATAGTATAAGATCGGAATTCAGGATTCAGGACTTCCGATTTTCTCTATTTCTGATGGTTTGGGATTGATTCGATTCATGTATATAACCGTGTGCCTTTTTTTTTTTTTTGAAAAACCATTATACGTACATATACGTATTTCCTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9708#0 AATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGA 60
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 GACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACC 120
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 CACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCC 180
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 AGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTA 240
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 CTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGAC 300
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 CCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCG 360
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 GCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAAC 420
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 CCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCAC 480
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 GTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACC 540
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 ATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGAC 600
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 GTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATC 660
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 CTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTC 720
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 ACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATG 780
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 TGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCG 840
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 CGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTGTTACGCAGGTGCACTGC- 899
consensus_9708#1 ----------------------------------TTTTTTGTTTACCCAC---CACTGCT 23
* ** **** ** ******
consensus_9708#0 ACTAGTAGTACATA-GTAGAGTATTA-TATTCTACACGGGCGGCACATTAGTTCGTTACA 957
consensus_9708#1 ACTAGAAGTAAGTACATAGAGTATTACTATATTCTACCGGTG-CAC-TTAGTTCTATTAC 81
***** **** ** ********** *** * ** ** * *** ******* *
consensus_9708#0 GATAGTATCAGATCAGGAATTCAGGATTCAGTGCTACGATTTTCTTCAATATTTCTTACT 1017
consensus_9708#1 GATAGTATAAGATC-GGAATTCAGGATTCAGGACTTCCGATTTTCTC--TATTTCTGATG 138
******** ***** **************** ** * *** ** ******* *
consensus_9708#0 GCGTGTTGGGATTGATTTGATTCATGTATATAACACGGTGTCAGTTTGGACATATATACA 1077
consensus_9708#1 GT---TTGGGATTGATTCGATTCATGTATATAACCGTGTGCCTTTTT-----TTTTTTTT 190
* ************ **************** *** * *** * * *
consensus_9708#0 TATACAGTAATTTCACTATTCTCATGTTTACTAGCTACTAATCCAAAAATTCCTAATCCA 1137
consensus_9708#1 TGAAAAACCATTATAC-GTACATATACGTATTTCCTATT--------------------- 228
* * * *** ** * * ** ** * *** *
consensus_9708#0 AAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGCCCACAGCGGCA 1197
consensus_9708#1 ------------------------------------------------------------
consensus_9708#0 AACTGCCAGCACACACAAAACTA 1220
consensus_9708#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||