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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 864 fasta sequence
[ACGAGACAAGGGGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACCCGTGTTGTGTATCGATCTGTTGTCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAACAACAGAA-CAGGTTGTGTATAGCTAGTTCAAAACGTGACATCTGTACCTGTCTCGACTCGTCTCACGTCTCCCCGAGTCTACACGTCACCACGCACGTACGTACGACGACACACAACTCTCACATGAAGATGCTCCGTCTGACACTCGACACAACACGGAAGGGCCACGTTCCTTCTCCAAAACGTTCTTCCGCAACTCTGCAGGTCTGCATCAAATATTTTCCAAATATTTTTCTTTTTTAGAGGGGTTGTGGGTACCTGTCTTGATGCCTTTTGGATCTCAANGGCCACACCGCTGTACCGGTGCACGCGCTGTCGCGTNACGGCGCGTGGAGCGGGTTCCACAGCGCCAGGACGCCGTANTGGTCACCGACAGGGGTGTGAAAAACCGCCGGTNACCGNGCGGNTACCGNCCGTACCGGGGGGGGTACCGGGTTACCCCGTACCGNGCCGGTAC]
[+] EMBL CA765913 [ACGAGACAAGGGGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACCCGTGTTGTGTATCGATCTGTTGTCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAACAACAGAA CAGGTTGTGTATAGCTAGTTCAAAACGTGACATCTGTACCTGTCTCGACTCGTCTCACGTCTCCCCGAGTCTACACGTCACCACGCACGTACGTACGACGACACACAACTCTCACATGAAGATGCTCCGTCTGACACTCGACACAACACGGAAGGGCCACGTTCCTTCTCCAAAACGTTCTTCCGCAACTCTGCAGGTCTGCATCAAATATTTTCCAAATATTTTTCTTTTTTAGAGGGGTTGTGGGTACCTGTCTTGATGCCTTTTGGATCTCAANGGCCACACCGCTGTACCGGTGCACGCGCTGTCGCGTNACGGCGCGTGGAGCGGGTTCCACAGCGCCAGGACGCCGTANTGGTCACCGACAGGGGTGTGAAAAACCGCCGGTNACCGNGCGGNTACCGNCCGTACCGGGGGGGGTACCGGGTTACCCCGTACCGNGCCGGTAC]
[+] EMBL BI796868 [ ATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTGTGTATCGATCTGTTGTCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAAC ACAGAACCAGGTTGTGTATAGCTAGTTCAAAACGTGACATCTGTAaaaa ]
consensusID : consensus_9712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence
[GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTATTCCCGTAACAAACAAAAGGGAAAATTTTTAAAAACCTAAAAAATAACCCCTTTAAAAAAGGGAAAATTTAAACTTGGGGAAAAAAAGGGAAAAACTTGTTCCCGGGAAAAAATGGTAACCCCTTAAAAATTCAAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGCCCAAAAAAGGAACCAACCC]
[+] EMBL AF049892 [GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAGTTCAAAAAAAA ]
[+] EMBL CF314561 [ TGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTATTCCCGTAACAAACAAAAGGGAAAATTTTTAAAAACCTAAAAAATAACCCCTTTAAAAAAGGGAAAATTTAAACTTGGGGAAAAAAAGGGAAAAACTTGTTCCCGGGAAAAAATGGTAACCCCTTAAAAATTCAAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGCCCAAAAAAGGAACCAACCC]
consensusID : consensus_9712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGCCAGCTCCGCCAAGAACTCGCCAAATGTACGTGCAAAATCATTCATGTTCAATTGTGTTTTTTTCTCCAATCTATCGTCAGTCGTCACAGCTTAACTACTTGTGTTGGTGATTGGTGCGTGCATTGCAGGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTCCTAGCAGCTTGATGAACACAAGAACAACAGAA]
[+] EMBL AK073481 [GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGCCAGCTCCGCCAAGAACTCGCCAAATGTACGTGCAAAATCATTCATGTTCAATTGTGTTTTTTTCTCCAATCTATCGTCAGTCGTCACAGCTTAACTACTTGTGTTGGTGATTGGTGCGTGCATTGCAGGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTCCTAGCAGCTTGATGAACACAAGAACAACAGAA]
consensusID : consensus_9712#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[ACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTCCCCTTAAATAAAAAAGGGGAAATTTTTTTAAACCCGGAAGAATTCCCCCTTTAAGGGGGGGTAATTTTAAACTTGGGAAAAAAAAGGGAAAAACCTTTTCCTTGGAAAAA]
[+] EMBL CF314756 [ACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTCCCCTTAAATAAAAAAGGGGAAATTTTTTTAAACCCGGAAGAATTCCCCCTTTAAGGGGGGGTAATTTTAAACTTGGGAAAAAAAAGGGAAAAACCTTTTCCTTGGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9712#1 GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGAC 60
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 GGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGAC 120
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 AAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCG 180
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 AATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACT 240
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 ------------------------------------------------------------
consensus_9712#2 -----------------------GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGA 37
consensus_9712#1 ACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGAC 300
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 ------------------------------------------------------------
consensus_9712#2 TCATGATGGCTCTCACCCGCGACGGCCAGCTCCGCCAAGAACTCGCCAAATGTACGTGCA 97
consensus_9712#1 GACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACG 360
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 ------------------------------------------------------------
consensus_9712#2 AAATCATTCATGTTCAATTGTGTTTTTTTCTCCAATCTATCGTCAGTCGTCACAGCTTAA 157
consensus_9712#1 GGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGA 420
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 -----------------------------------------------------------A 1
consensus_9712#2 CTACTTGTGTTGGTGATTGGTGCGTGCATTGCAGGTGTGGAGGAGAAGTTCAGCGTGTCG 217
consensus_9712#1 GCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTC 480
consensus_9712#3 ------------------------------ACTCGTGTTATGTATCGATCTGTTGTCCCT 30
consensus_9712#0 CGAGACAAGGGGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCG 61
consensus_9712#2 TTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCG 277
* * * * *
consensus_9712#1 TAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAGTTCAAAAAAAA 540
consensus_9712#3 GAGC-GTTTGTTCAAAAAAAAAAAAAAAAAAAAA------------------AAAAAAAA 71
consensus_9712#0 CTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCG 121
consensus_9712#2 CTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCG 337
* * ** ** * *
consensus_9712#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 600
consensus_9712#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 131
consensus_9712#0 ATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTG 181
consensus_9712#2 ATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTG 397
* * * * * * * * * * * * * *
consensus_9712#1 AAAAAAAAAAAAAAAAACCCTTTTATTCCCGTAACAAACAAAAGGGAAAATTTTTAAAAA 660
consensus_9712#3 AAAAAAAAAAAAAAAAACCCTTTTTTCCCCTTAAATAAAAAAGGGGAAATTTTTTTAAAC 191
consensus_9712#0 AGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCAT 241
consensus_9712#2 AGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCAT 457
* * * * * * * * * * * * * *
consensus_9712#1 CCTAAAAAATAACCCCTTTAAAAAAGGGAAAATTTAAAC---TTGGGGAAAAAAAGGGAA 717
consensus_9712#3 CCGGAAGAATTCCCCCTTTAAGGGGGGGTAATTTTAAAC---TTGGGAAAAAAAAGGGAA 248
consensus_9712#0 ATCACGGGATGCTCCGATTA-GCTTGTGTACCTTCACCCGTGTTGTGTATCGATCTGTTG 300
consensus_9712#2 ATCACGGGATGCTCCGATTA-GCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTG 516
** ** *** * * * ** * * ** * * * *
consensus_9712#1 -----AAACTTGTTCCCGGGAAAAAATGGTAACCCCTTAAAAATTCAAAAAAAAAAAAAA 772
consensus_9712#3 -----AAACCTTTTCCTTGGAAAAA----------------------------------- 268
consensus_9712#0 TCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCC 360
consensus_9712#2 TCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCC 576
* * * * ** **
consensus_9712#1 CCGGAAACAAAAAAGGGAAAACCCGGGGGGCCCAAAAAAGGAACCAACCC---------- 822
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 TCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAACAACAGAACAGGT 420
consensus_9712#2 TCTTTCCTAGCAGCTTG-----------------ATGAACACAAGAACAACAGAA----- 614
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 TGTGTATAGCTAGTTCAAAACGTGACATCTGTACCTGTCTCGACTCGTCTCACGTCTCCC 480
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 CGAGTCTACACGTCACCACGCACGTACGTACGACGACACACAACTCTCACATGAAGATGC 540
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 TCCGTCTGACACTCGACACAACACGGAAGGGCCACGTTCCTTCTCCAAAACGTTCTTCCG 600
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 CAACTCTGCAGGTCTGCATCAAATATTTTCCAAATATTTTTCTTTTTTAGAGGGGTTGTG 660
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 GGTACCTGTCTTGATGCCTTTTGGATCTCAANGGCCACACCGCTGTACCGGTGCACGCGC 720
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 TGTCGCGTNACGGCGCGTGGAGCGGGTTCCACAGCGCCAGGACGCCGTANTGGTCACCGA 780
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#0 CAGGGGTGTGAAAAACCGCCGGTNACCGNGCGGNTACCGNCCGTACCGGGGGGGGTACCG 840
consensus_9712#2 ------------------------------------------------------------
consensus_9712#1 ------------------------
consensus_9712#3 ------------------------
consensus_9712#0 GGTTACCCCGTACCGNGCCGGTAC 864
consensus_9712#2 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||