These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 808 fasta sequence [AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAAAACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATAATACTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGGTGGTATCCTGC] [+] EMBL CB682804 [AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAAAACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATAATAGTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCA ] [+] EMBL CB673137 [ ccttttaggACCGGCAAAAACATCTTTAACTTTTATAATACTTTAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGG ] [+] EMBL CB659070 [ AATACTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGG ] [+] EMBL C71906 [ aATTTTTTNAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGNTTGTATCCACGTAACGCGTGGACGNGTTNAACGACCATGGGGAGGCCGTGCTTGGGGCGGA CGTNATGACGTCGGTGGGCGCNTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGATTATCGNGGCGACGACGGCCTTCGNCTCGA ] [-] EMBL CB682803 [ aTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCTGGATCGCCGGCTCCGGGCTGTACAGCCGCAGCGTCTCCAGTAAG ACCGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGATGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGGTGGTATCCTGC] consensusID : consensus_9713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATAATAGTAGAGATGGTGTATTTTTTTAAACAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGTGACGACCATGGGGAGGCCGGCTGTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTTCGCCTCGACCATGGCGAATGCTCTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCGGCGTCGGGCCCCACACTCCTCGACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAGCATCGTGCCTCCCGAGCACCGCCACGCCGCCCATCTCCACCGCCGACCGC] [-] EMBL BI797359 [TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATAATAGTAGAGATGGTGTATTTTTTTAAACAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGTGACGACCATGGGGAGGCCGGCTGTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTTCGCCTCGACCATGGCGAATGCTCTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCGGCGTCGGGCCCCACACTCCTCGACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAGCATCGTGCCTCCCGAGCACCGCCACGCCGCCCATCTCCACCGCCGACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9713#0 AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAA 60 consensus_9713#1 ------------------------------------------------------------ consensus_9713#0 AACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATA 120 consensus_9713#1 ----------------------TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATA 38 * ****** ***** ** ************* consensus_9713#0 ATACTAGAGATTGT-TATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAA 179 consensus_9713#1 ATAGTAGAGATGGTGTATTTTTTTAAACAAATTTAATAACTATTTACATGGACATGCAAA 98 *** ******* ** ************ ******************************** consensus_9713#0 TAACGTCCTCCCGAGGGGTGACGAATCGCT-TGTATCCACGTCACGCG-TGGACGCGTGT 237 consensus_9713#1 TAACGTCCTCCCGAGGGGTGACGAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGT 158 ****************************** ***************** *********** consensus_9713#0 GACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGG-TGGGCGC-GTGG 295 consensus_9713#1 GACGACCATGGGGAGGCCGGCTGTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGG 218 ******************* ************************ ******* **** consensus_9713#0 ACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGAC-GGCCTT 354 consensus_9713#1 ACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTT 278 ********************************** *********** ****** ****** consensus_9713#0 CGCCTCGACCATGGCGAA-GCTCTGCCC-GACGCACGCCCTCG-GCCCCGTGGAGAAGGA 411 consensus_9713#1 CGCCTCGACCATGGCGAATGCTCTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGA 338 ****************** ********* *** ******* **************** consensus_9713#0 CAGCAGCTTGGCCATGGCGCCGCCGCCGC-CGTCGAACCTCATCGGG-TCGAACACCCCG 469 consensus_9713#1 CAGCAGCTTGGCCATGGCGCCGCGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCG 398 *********************** * ** ***************** ************ consensus_9713#0 GCGTCGGCGCCCCACACCTCCTCGTCGCG--GTGCATCGTCG--CGATCGGGAACGTCAG 525 consensus_9713#1 GCGTCGG-GCCCCACAC-TCCTCGACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAG 456 ******* ********* ****** * ** ********** **************** consensus_9713#0 CATCGTGCCTCCCG-GCACCGTCACGCCGCCCATCTCCACCGCCG-CCGCCGTCCGCCTC 583 consensus_9713#1 CATCGTGCCTCCCGAGCACCGCCACGCCGCCCATCTCCACCGCCGACCGC---------- 506 ************** ****** *********************** **** consensus_9713#0 CGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGC 643 consensus_9713#1 ------------------------------------------------------------ consensus_9713#0 TTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCG 703 consensus_9713#1 ------------------------------------------------------------ consensus_9713#0 CCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTG 763 consensus_9713#1 ------------------------------------------------------------ consensus_9713#0 AGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGGTGGTATCCTGC 808 consensus_9713#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||