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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1215 fasta sequence
[AAGGACGAGCTCGTGGAGAAGAACCTCAAGATGGGCGACGTCCTCCACATCGACGCCGGCTCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATCGACGCCTCCGATAACATCGGCTTCGGCCCTTATCAGGCCTTCTTCCTTGGTGGTGGCGGCGGAGCGGCGGCCGGGCAGTGGAGGCCAGTGGGCAGAGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGTGGTGGACGAAGCGTCGTCGACGTGGTCGTGGACGAAGCTCGTGGGCCGTCTCCTCGGAGTGGTCGGAGGCGGGGCGCCGTCCAACTCCGTGGCCGCGCAGCCGAAGAAGAAGAAGGACAAGACGGTGCGCGCGCCGGAGCCGTACAACCTCTACGAGCAGGGCACCGGCTTCCGCAACGCCTACGGATCCAGCGTCGCCGTCGACAAGCACGACTACGAGCCCCTCGGCCACTCCGACATCGGCGTCTATCTCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGAACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTTCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTTCTACAT-CCCGCGCTACTTCCCGTTCTGCCAGGTGGCGTCGC-GGGCGGCCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC-AACTTTTGTAA-CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG-TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAAAAAAA]
[+] EMBL AK105307 [AAGGACGAGCTCGTGGAGAAGAACCTCAAGATGGGCGACGTCCTCCACATCGACGCCGGCTCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATCGACGCCTCCGATAACATCGGCTTCGGCCCTTATCAGGCCTTCTTCCTTGGTGGTGGCGGCGGAGCGGCGGCCGGGCAGTGGAGGCCAGTGGGCAGAGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGTGGTGGACGAAGCGTCGTCGACGTGGTCGTGGACGAAGCTCGTGGGCCGTCTCCTCGGAGTGGTCGGAGGCGGGGCGCCGTCCAACTCCGTGGCCGCGCAGCCGAAGAAGAAGAAGGACAAGACGGTGCGCGCGCCGGAGCCGTACAACCTCTACGAGCAGGGCACCGGCTTCCGCAACGCCTACGGATCCAGCGTCGCCGTCGACAAGCACGACTACGAGCCCCTCGGCCACTCCGACATCGGCGTCTATCTCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGAACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTTCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTTCTACAT CCCGCGCTACTTCCCGTTCTGCCAGGTGGCGTCGCGGGGCGGGCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCCAAACTTTTGTAA CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGC ]
[+] EMBL BI804374 [ GCGACGTGTTCTACAT CCCGCGCTACTTCCCGTTCTGCCAGGTGGCGTCGC GGGCGGCCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATC ATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC AACTTTTGTAA CCATGGGCGTGTCTGCTC ACTTATGTTTGCGCTCTTCGTGCTTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAA ]
[+] EMBL BI797698 [ GTTCTACATCCCCGCGCTACTTCCCGTTCTGCCA GTGGCGTC C GGGCGGCCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTC GCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTC CC CCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAA CCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCCAAACTTTTGTAACCCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAAAAAAA]
[+] EMBL BI802715 [ TCGGGTTCACGACGTC GCGCGGCGGAACCACCCTCAGTTCCTCGTC GCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGCCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC AACTTTTGTAA CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAAA ]
[+] EMBL BI804590 [ GCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC AACTTTTGTAA CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTACTAAAAAAA]
consensusID : consensus_9714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGACACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTCCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTACTACATGCCCGCGCTACTGCCCGTTGCTGCCAGGTGGCGTCCCGGGGCGGGCCGTTCGTGTCCTGCGGGTCCACGACGTCGGCGCGGTCTGGAACCACCCTCAGTGCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCCATGAGGAACTGGTGCTGGCCCAGATGAGCCGTGATTCTGGCCGTCTGGCCGAAAANTAAAAGCAGAGTGGGAGAGACCCAGACAAGTGGAGAANAAAAGCCCGCAGCAAGAACCATGGGTTATCACNGTGCCGCGAGTATACGAGCCCGGTTAGCAACNGCTAATNGATGCACCTTGACCTTTTAAGCCGG]
[+] EMBL BQ164674 [CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGACACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTCCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTACTACATGCCCGCGCTACTGCCCGTTGCTGCCAGGTGGCGTCCCGGGGCGGGCCGTTCGTGTCCTGCGGGTCCACGACGTCGGCGCGGTCTGGAACCACCCTCAGTGCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCCATGAGGAACTGGTGCTGGCCCAGATGAGCCGTGATTCTGGCCGTCTGGCCGAAAANTAAAAGCAGAGTGGGAGAGACCCAGACAAGTGGAGAANAAAAGCCCGCAGCAAGAACCATGGGTTATCACNGTGCCGCGAGTATACGAGCCCGGTTAGCAACNGCTAATNGATGCACCTTGACCTTTTAAGCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9714#0 AAGGACGAGCTCGTGGAGAAGAACCTCAAGATGGGCGACGTCCTCCACATCGACGCCGGC 60
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 TCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATC 120
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 GACGCCTCCGATAACATCGGCTTCGGCCCTTATCAGGCCTTCTTCCTTGGTGGTGGCGGC 180
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 GGAGCGGCGGCCGGGCAGTGGAGGCCAGTGGGCAGAGGCGAGGAGGAGGAGGAGGAGGAG 240
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 GAGGAGTTGGTGGTGGACGAAGCGTCGTCGACGTGGTCGTGGACGAAGCTCGTGGGCCGT 300
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 CTCCTCGGAGTGGTCGGAGGCGGGGCGCCGTCCAACTCCGTGGCCGCGCAGCCGAAGAAG 360
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 AAGAAGGACAAGACGGTGCGCGCGCCGGAGCCGTACAACCTCTACGAGCAGGGCACCGGC 420
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 TTCCGCAACGCCTACGGATCCAGCGTCGCCGTCGACAAGCACGACTACGAGCCCCTCGGC 480
consensus_9714#1 --------------------------------------------------CTCTCTCTCT 10
* ***
consensus_9714#0 CACTCCGACATCGGCGTCTATCTCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCAC 540
consensus_9714#1 CTCTCTCTCTCTCTCTCTCTCTCCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCAC 70
* *** * * *************************************
consensus_9714#0 GTGA-ACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGT 599
consensus_9714#1 GTGACACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGT 130
**** *******************************************************
consensus_9714#0 CGTGTTCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTTCTA 659
consensus_9714#1 CGTGTCCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTACTA 190
***** ************************************************** ***
consensus_9714#0 CAT-CCCGCGCTACTTCCCGTT-CTGCCAGGTGGCGTCGCGGG-CGGCCCGTTCGTGTTC 716
consensus_9714#1 CATGCCCGCGCTACTGCCCGTTGCTGCCAGGTGGCGTCCCGGGGCGGGCCGTTCGTGTCC 250
*** *********** ****** *************** **** *** ********** *
consensus_9714#0 TTCGGGTTCACGACGTCGGCGCGGC--GGAACCACCCTCAGTTCCTCGTCGGCGGCTCCT 774
consensus_9714#1 TGCGGGTCCACGACGTCGGCGCGGTCTGGAACCACCCTCAGTGCCTCGTCGGCGGCTCCT 310
* ***** **************** *************** *****************
consensus_9714#0 CCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGG 834
consensus_9714#1 CCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGG 370
************************************************************
consensus_9714#0 CGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGA 894
consensus_9714#1 CCATGAGGAA-CTGGTGCTGGCCCAGA-TGAGCCG-TGATTCTGGCCGTCTGGCCGAAAA 427
* ******** *********** **** **** ** **** *** * ******* * *
consensus_9714#0 AGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGA 954
consensus_9714#1 NTAAAAGCAG-----AGTGGGAGAGA---CCC---------AGACAAGTGGAGAANAAAA 470
** * * ******** *** ** * ****** ** *
consensus_9714#0 AGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAA 1014
consensus_9714#1 GCCCG------CAGCAAGAACCATGGGTTATCAC---NGTGCCGCGAGTATACGAGCCCG 521
** *** * ************ ****** ** * *
consensus_9714#0 GCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGC 1074
consensus_9714#1 GTTAGCAACNGCTAATNGATGCACCTTGACCTTTTAAGCCGG------------------ 563
* ** **** * * ** *** * * *
consensus_9714#0 TTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCCAACTTTTGTAACCATGGGCGTGTC 1134
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 TGCTCAACTTATGTTTGCGCTCTTCGTGTTGCTTCGGCGTCGCGTTAATAAATAAAGATG 1194
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 CTTCTGCTTTTAAAAAAAAAA 1215
consensus_9714#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||