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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1497 fasta sequence
[ACCGCCTCCTCCTCCGCCGCGGCGCGATGCCCGTCCCCCCGCCGCTGCCCCCGCGGACGCCGCCGCCGGGGGTCGCGCGCCCCTTCGCCTCCCTCCCTCCCCCACCGCCTCTCCAGTCACGCAGGGAGGTGCATGTTTGGTATGTTTGCCCTGATGAGCTGAATGATCACTCCCACCTGGATATGTACATGGAACTCCTTTCTCCCTCCGAAAGGAAGAACGCGCTGTCTATGAACGGGCCGAGGCTGCAGAAAGATGCTATGTTGTCGCGTGCATTGCTGCGCACTACCCTCTCAAGATATACAAATTCTAAAATTGATCCAAGATCATTTGAGTTTAAGAAGAATAAATTTGGTTTTAATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGGATATTGGACCTAGAGAGGAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGACCTAGGAAATGCAACACCGTTTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCCAGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCATCATTTTTACTGATTGGAAGGATGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAAGATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGTCACTATTAGAGCTTAGAGAATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGGATTGGAATAAGATGTGCTCCTGCCAAGTTAATTATGTTGGCTTGGTTTGAGGTAGCAGTTAAAATTCATGTGCTGTTTGAACTGATGCACTGATAAGTTTAATTTTCTTGAGTGATC]
[+] EMBL AK106413 [ACCGCCTCCTCCTCCGCCGCGGCGCGATGCCCGTCCCCCCGCCGCTGCCCCCGCGGACGCCGCCGCCGGGGGTCGCGCGCCCCTTCGCCTCCCTCCCTCCCCCACCGCCTCTCCAGTCACGCAGGGAGGTGCATGTTTGGTATGTTTGCCCTGATGAGCTGAATGATCACTCCCACCTGGATATGTACATGGAACTCCTTTCTCCCTCCGAAAGGAAGAACGCGCTGTCTATGAACGGGCCGAGGCTGCAGAAAGATGCTATGTTGTCGCGTGCATTGCTGCGCACTACCCTCTCAAGATATACAAATTCTAAAATTGATCCAAGATCATTTGAGTTTAAGAAGAATAAATTTGGTAAGCCTGAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCATCATATGACAACATGGATATTGGACCTAGAGAGGAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGACCTAGGAAATGCAACACCGTTTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCCAGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCATCATTTTTACTGATTGGAAGGATGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAAGATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGTCACTATTAGAGCTTAGAGAATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGGATTGGAATAAGATGTGCTCCTGCCAAGTTAATTATGTTGGCTTGGTTTGAGGTAGCAGTTAAAATTCATGTGCTGTTTGAACTGATGCACTGATAAGTTTAATTTTCTTGAGTGATC]
[+] EMBL CA998295 [ TTTAATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGGATATTGGACCTAGAGAGGAAACTCTAGTATTCTTCGATCG ]
[+] EMBL CA998366 [ TTTAATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTNAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAAT ]
[+] EMBL CA998358 [ TTTATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCCTTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACCTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGG ]
[+] EMBL CA999807 [ GTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAG ]
consensusID : consensus_9725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[TCGCAAAGTACACTGTAACTTACTGTGCTGGTTTTATGCAATAGACAAGTTGGTAAATATATCATACCTAGGGCAAACAGTTTAGATGCTAACACCGTTGGATGTTTTTTAAATGATGATTGACAGGGGAGGTAGTGGTTTTATGAACAATTCCTCTGTGGAACACTAAATTGTTGAGGATGCGTTCTCACCATTTGAATTTAGTTAATTGGAATATCGTAGAACAGTTAACGTGGAGAGGTAGCAACAAGAAATATGAATTTGGTGAAAATATTTTGAAGTGCACAAATCAAAATGGGTTCACATAAATTTCTGGATATAAAATCGATCCATGTAGAACATAGAGAGGTTATTAACACTGATTTGGCGATATGATGTTGCAGAAGATATGATTACATGGATTACTTATTTCTTATGCCTTGAACTTTTAGGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGTATGTAACTGTACTTTCTTCTTTCTTGG]
[+] EMBL CF305604 [TCGCAAAGTACACTGTAACTTACTGTGCTGGTTTTATGCAATAGACAAGTTGGTAAATATATCATACCTAGGGCAAACAGTTTAGATGCTAACACCGTTGGATGTTTTTTAAATGATGATTGACAGGGGAGGTAGTGGTTTTATGAACAATTCCTCTGTGGAACACTAAATTGTTGAGGATGCGTTCTCACCATTTGAATTTAGTTAATTGGAATATCGTAGAACAGTTAACGTGGAGAGGTAGCAACAAGAAATATGAATTTGGTGAAAATATTTTGAAGTGCACAAATCAAAATGGGTTCACATAAATTTCTGGATATAAAATCGATCCATGTAGAACATAGAGAGGTTATTAACACTGATTTGGCGATATGATGTTGCAGAAGATATGATTACATGGATTACTTATTTCTTATGCCTTGAACTTTTAGGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGTATGTAACTGTACTTTCTTCTTTCTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9725#0 ACCGCCTCCTCCTCCGCCGCGGCGCGATGCCCGTCCCCCCGCCGCTGCCCCCGCGGACGC 60
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 CGCCGCCGGGGGTCGCGCGCCCCTTCGCCTCCCTCCCTCCCCCACCGCCTCTCCAGTCAC 120
consensus_9725#1 --------------------------------------------------------TCGC 4
** *
consensus_9725#0 GCAGGGAGGTGCATGTTTGGTATGTTTGCCCTGATGAGCTGAATGATCACTCCCACCTGG 180
consensus_9725#1 AAAGTACACTGTA-ACTTACTGTGCTGGTTTT-ATGCAATAGACAA--GTTGGTAAATAT 60
** ** * ** * ** * * * *** * * * * * *
consensus_9725#0 ATATGTACATGGAACTCCTTTCTCCCTCCGAAAGGAAGAACGCGCTGTCTATGAACGGGC 240
consensus_9725#1 AT-CATACCTAGGGCAAA-----CAGTTTAGATGCTAACAC-CGTTGGATGTTTTTTAAA 113
** *** * * * * * * * * ** ** ** * *
consensus_9725#0 CGAGGCTGCAGAAAGATGCTATGTTGTCGCGTGCATTGCTGCGCACTACCCTCTCAAGAT 300
consensus_9725#1 TGATGATTGACAGGGGAGGTA---------GTGGTTTTATGAACAATTCCTCTGTGGAAC 164
** * * * * * * ** *** ** ** ** * ** *
consensus_9725#0 ATACAAATTCTAAAATTGATCCAAGATCATTTGAGTTTAAGAAGAATAAATTTGGTTTTA 360
consensus_9725#1 ACTAAATTGTTGAGGATGCGTTCTCACCATTTGAATTTAGTTAATTGGAATATCGTA--G 222
* ** * * * ** * ******* **** * *** * **
consensus_9725#0 ATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTT 420
consensus_9725#1 AACAGTTAACGTGGAGA------GGTAGCAACAAGAA-----------ATATGAATTTGG 265
* *** ** **** * * ****** * * * ** * *** *
consensus_9725#0 CACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATG 480
consensus_9725#1 TGAAAATATTTTG---AAGTGCACAA---ATCAAAATGGGTTCACATAAATTTCTGGATA 319
* * ** ** * *** ** **** * * * ** * ***
consensus_9725#0 TTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTA 540
consensus_9725#1 T--AAAATCGATCCATGTAGAACATAGAGAGGTTATTAACACTGATTTGGCGATATGATG 377
* ** * * *** * **** * *** * ** * * ** ** *
consensus_9725#0 CCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAAT 600
consensus_9725#1 ---TTGCAGAAGATA--TGATTACATGGATTACTTATTTCTTATGCC------------- 419
* ****** * * ** * * * * **** ****
consensus_9725#0 TCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAG 660
consensus_9725#1 -----------TTGAACTTTTAGGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAG 468
* ** * * * *************************************
consensus_9725#0 GTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTA 720
consensus_9725#1 GTGCTCCTTTTA-TAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTA 527
************ ***********************************************
consensus_9725#0 AGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGT 780
consensus_9725#1 AGGTATGTAA---CTGTACTTTCTTCTTTCTTGG-------------------------- 558
*** * ** **** * * * ***
consensus_9725#0 TTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAA 840
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 GAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCA 900
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 TAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAA 960
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 GAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGGATATTGGACCTAGAGAG 1020
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 GAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGAC 1080
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 CTAGGAAATGCAACACCGTTTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCC 1140
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 AGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCATCATTTTTACTGATTGGAAGGA 1200
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 TGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAAG 1260
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 ATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGT 1320
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 CACTATTAGAGCTTAGAGAATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGG 1380
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 ATTGGAATAAGATGTGCTCCTGCCAAGTTAATTATGTTGGCTTGGTTTGAGGTAGCAGTT 1440
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 AAAATTCATGTGCTGTTTGAACTGATGCACTGATAAGTTTAATTTTCTTGAGTGATC 1497
consensus_9725#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||