These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [CAGAGAGTTGAAGACTTTCACATGTTCAGAGTACAATATTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCTGCAACAAAATTTAAGCCATAAAGCAATGTTAATCATCACAGAGAAGACATCAGAGTAAAAAGAGTTAGTAGTACACTGCAAGAACTCTGCTAGTACTTCAGAAGCACAACCGTAAATTTCATCATCAGAATATATATCTAGTTTCATTGTAAGAAATGTACTACTACTGGTACCGCAGAAGCTTAATCATGCAATTGAAAAAAAAAGAACAGTTTTTTCCCAAATAAAGTTCTTGCTTTTTGAAGAGAAAAACAGAACTGTTCCTTGGCAATTGAATGATCCATTTTGTTTTCAGATTATCGTCAACCATAAACCCATCAGTTCTTAATACCTAGCTTAAGTGCTTAACCAGGCATGCACCAATGCGTTTCTCAACACTTCTAAAACACATATGAGGTAAAATGCAAGACAAAAATAAAACAAGAGAGTGGGAGGCAACAAGAAAAAAAAATCAGGGCATAATCAACATGCAAGCAAAAGCAACAAGAAGAGGAAGAAAGAACAAAAAAAGAAAACGAAATTCTGGTGAAAACAGCTAGTAGTAGCTAGAAAGCACTAAGAGTTTGTCAGCACTGAACAATTAAACCAACCCCAAACACAAATGAGGTAAAAATTAGAATGCAACCAAAAACAAAACATCCAAGCAAAGCAAAA] [+] EMBL CB626880 [CAGAGAGTTGAAGACTTTCACATGTTCAGAGTACAATATTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCTGCAACAAAATTTAAGCCATAAAGCAATGTTAATCATCACAGAGAAGACATCAGAGTAAAAAGAGTTAGTAGTACACTGCAAGAACTCTGCTAGTACTTCAGAAGCACAACCGTAAATTTCATCATCAGAATATATATCTAGTTTCATTGTAAGAAATGTACTACTACTGGTACCGCAGAAGCTTAATCATGCAATTGAAAAAAAAAGAACAGTTTTTTCCCAAATAAAGTTCTTGCTTTTTGAAGAGAAAAACAGAACTGTTCCTTGGCAATTGAATGATCCATTTTGTTTTCAGATTATCGTCAACCATAAACCCATCAGTTCTTAATACCTAGCTTAAGTGCTTAACCAGGCATGCACCAATGCGTTTCTCAACACTTCTAAAACACATATGAGGTAAAATGCAAGACAAAAATAAAACAAGAGAGTGGGAGGCAACAAGAAAAAAAAATCAGGGCATAATCAACATGCAAGCAAAAGCAACAAGAAGAGGAAGAAAGAACAAAAAAAGAAAACGAAATTCTGGTGAAAACAGCTAGTAGTAGCTAGAAAGCACTAAGAGTTTGTCAGCACTGAACAATTAAACCAACCCCAAACACAAATGAGGTAAAAATTAGAATGCAACCAAAAACAAAACATCCAAGCAAAGCAAAA] consensusID : consensus_9730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 770 fasta sequence [TTTTTTTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAAC-GAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCC-ACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCAC-GCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTAATCATCTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC] [-] EMBL BQ908638 [TTTTTTTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAACTGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGG GGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCCNACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGGCACCCCGCCGCTGTACGCGCACAGCCGTCGGCGGCTTGCAGAACC ] [-] EMBL AK066098 [ AGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAAC GAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCC ACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCAC GCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTAATCATCTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC] [-] EMBL AK099070 [ AGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAAC GAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCC ACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCAC GCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTAATCATCTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC] [-] EMBL BI801735 [ ttTTGAGGAAC GAATCAACTCTCAACTATGTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGAATCGCACCCGTA ] consensusID : consensus_9730#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [CTGCTGAGTGCTACTTTGCATTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAACGATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCCACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC] [-] EMBL AK059541 [CTGCTGAGTGCTACTTTGCATTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAACGATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCCACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9730#1 ---------------TTTTTTTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAA 45 consensus_9730#2 CTGCTGAGTGCTACTTTGCATTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAA 60 consensus_9730#0 ------------------------------------------------------------ consensus_9730#1 GGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATA 105 consensus_9730#2 GGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATA 120 consensus_9730#0 ----------------------CAGAGAGTTGAAGACTTTCACATGTTCAGAGTACAATA 38 ******************** ***************** consensus_9730#1 TTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATA 165 consensus_9730#2 TTGAGGAACGA-TCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATA 179 consensus_9730#0 TTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATA 98 *********** ************************************************ consensus_9730#1 CAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATC 225 consensus_9730#2 CAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATC 239 consensus_9730#0 CAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATC 158 ************************************************************ consensus_9730#1 GCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGT 285 consensus_9730#2 GCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGT 299 consensus_9730#0 GCCACCTGCAACAAAATT-TAAGCCATAAAGCA-----ATGTTAATCATCACAGAGAAGA 212 ****** * * * * * * * * *** * * * * * * consensus_9730#1 ACTCGGAG-ACGGAGCGGCGGGCGTTC-CTGAAGGCGCAGCAGCCGCAGGCGCAGATGCA 343 consensus_9730#2 ACTCGGAG-ACGGAGCGGCGGGCGTTC-CTGAAGGCGCAGCAGCCGCAGGCGCAGATGCA 357 consensus_9730#0 CATCAGAGTAAAAAGAGTTAGTAGTACACTGCAAGAACT-CTGCTAGTACTTCAGAAGCA 271 ** *** * ** * * ** * *** * * * * ** **** *** consensus_9730#1 GATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCAC 403 consensus_9730#2 GATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCAC 417 consensus_9730#0 --CAACCGTAAATTTCATCATCAGAATATATATCTAGTTTCATTGTAAGAAATGTACTAC 329 * * * ** *** * * * * ** * ** * * ** consensus_9730#1 CTTCTCCATCACCCCGGCCC---TGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGC 460 consensus_9730#2 CTTCTCCATCACCCCGGCCC---TGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGC 474 consensus_9730#0 TACTGGTACCGCAGAAGCTTAATCATGCAATTGAAAAAAAAAGAACAGTTTTTTCCCAAA 389 * * * ** * * * * ** ***** * * * consensus_9730#1 ----GTTGTTCCACC--GGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCG-CCGC 513 consensus_9730#2 ----GTTGTTCCACC--GGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCG-CCGC 527 consensus_9730#0 TAAAGTTCTTGCTTTTTGAAGAGAAAAACAGAACTGTTCCTTGGCAATTGAATGATCCAT 449 *** ** * * * * * *** * * * ** consensus_9730#1 TGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTA 573 consensus_9730#2 TGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACT--------------------- 566 consensus_9730#0 TTTGTTTTCAGATTATCGTCAACCATAAACCCATCAGTTCTTAATACCTAGCTTAAGTGC 509 * * ** *** * * * * * * * consensus_9730#1 ATCATCTGGATTGGGGTGAGATCATGCTGGAGGT------AATCCATGGGTGACCAATTG 627 consensus_9730#2 -------GGATTGGGGTGAGATCATGCTGGAGGT------AATCCATGGGTGACCAATTG 613 consensus_9730#0 TTAACCAGGCATGCACCAATGCGTTTCTCAACACTTCTAAAACACATATGAGGTAAAATG 569 ** ** * * ** * ** *** * * ** ** consensus_9730#1 ----GCGATCTTGGGGCAAGCC--TTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAG 681 consensus_9730#2 ----GCGATCTTGGGGCAAGCC--TTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAG 667 consensus_9730#0 CAAGACAAAAATAAAACAAGAGAGTGGGAGGCAACAA-GAAAAAAAAATCAGGGCATAAT 628 * * * **** * *** **** * * * * * **** * consensus_9730#1 TATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCG 741 consensus_9730#2 TATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCG 727 consensus_9730#0 CAACATGCAAGCAAAAGCAACAAGAAGAGGAAGAAAGAACAAAAAAAGAAAACGAAATTC 688 * ** * * * ** ** * ** * ** * * * consensus_9730#1 CGGTAGGGGCGGCCGG--GGACCTGGGTGCC----------------------------- 770 consensus_9730#2 CGGTAGGGGCGGCCGG--GGACCTGGGTGCC----------------------------- 756 consensus_9730#0 TGGTGAAAACAGCTAGTAGTAGCTAGAAAGCACTAAGAGTTTGTCAGCACTGAACAATTA 748 *** * ** * * * ** * * consensus_9730#1 ------------------------------------------------------------ consensus_9730#2 ------------------------------------------------------------ consensus_9730#0 AACCAACCCCAAACACAAATGAGGTAAAAATTAGAATGCAACCAAAAACAAAACATCCAA 808 consensus_9730#1 ----------- consensus_9730#2 ----------- consensus_9730#0 GCAAAGCAAAA 819 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||