These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1412 fasta sequence [CCTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT-CACCCGGGGCGTC--CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCC-GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG-CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGCAATGCGTGTCAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAAGGTGTGAGATTTCCATGAGCTGGATGCTGGAGTTTATA] [+] EMBL AK072176 [CCTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT CACCCGGGGCGTC CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGTCAGCCCC GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGAT ] [+] EMBL AK072014 [ CTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT CACCCGGGGCGTC CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCC GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGCTTTGCGTGTCAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAAGGTGTGAGATTTCCATGAGCTGGATGCTGGAGTTTATA] [+] EMBL AK105268 [ CTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT CACCCGGGGCGTC CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCC GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGC ] [+] EMBL BI813283 [ cGCGTCCACCCACGCAGTCCGCCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCCAGGAACCGGCCCTCC CCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAAC AATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAGCCCAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTaaaaaa ] [+] EMBL BI802391 [ gcCCTTCATCGAGCGCTGCATCGGCCAGCCCC GGAACC GCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTaaaaaaa ] consensusID : consensus_9733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [GGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCCCTGCATCCTCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACGCCGGCCAGGTGTTCGACACGGTCATATGCCTCTTCTGCTGGATGATCTGGAAAGAAAGGAGCACAAGAGTCTTTGAAGCCTTCACCCACTAGTTACTGTAGGTCGCAGATTGCACAATTGATGAGCGGAGGACATGGAAGATGGCTGGACTAGGTGCCTAGCATAGCACAACAGATTGGTAACCTGAAGTGTAGCATTGTGCCGACGAGCCCAGGTCATCAGGCACTTTGCCTTGGTTTTATGACAGGGCTCGCTTCGCATCTCAGTCTCACGCCCGATATGCTTCATCCTCTGTGTTTTGGCTGAGCATTTACAAAGTCTATAAATTTTTACCCCCTCCCTCCTTAATACAAGTTCGGTCGGCATTCTTTGTCAGCCCAGCGAAAAAAATAGTTTTGTTGGAGTCTTTGTGGTTGTATTTCGTACCAATACTTGTTCTTGCATCTCTTTGTACTAATTGTAGNGCCACCTCAAATTTTATAGTACTTGGCATGCTATTTAATGCTATGAACTCTCAAGTGAGGTGAAATGTTAACTGAACAAGTAATAAATATCGATTGGTGG] [+] EMBL CA766731 [GGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCCCTGCATCCTCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACGCCGGCCAGGTGTTCGACACGGTCATATGCCTCTTCTGCTGGATGATCTGGAAAGAAAGGAGCACAAGAGTCTTTGAAGCCTTCACCCACTAGTTACTGTAGGTCGCAGATTGCACAATTGATGAGCGGAGGACATGGAAGATGGCTGGACTAGGTGCCTAGCATAGCACAACAGATTGGTAACCTGAAGTGTAGCATTGTGCCGACGAGCCCAGGTCATCAGGCACTTTGCCTTGGTTTTATGACAGGGCTCGCTTCGCATCTCAGTCTCACGCCCGATATGCTTCATCCTCTGTGTTTTGGCTGAGCATTTACAAAGTCTATAAATTTTTACCCCCTCCCTCCTTAATACAAGTTCGGTCGGCATTCTTTGTCAGCCCAGCGAAAAAAATAGTTTTGTTGGAGTCTTTGTGGTTGTATTTCGTACCAATACTTGTTCTTGCATCTCTTTGTACTAATTGTAGNGCCACCTCAAATTTTATAGTACTTGGCATGCTATTTAATGCTATGAACTCTCAAGTGAGGTGAAATGTTAACTGAACAAGTAATAAATATCGATTGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9733#0 CCTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCG 60 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 ACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGG 120 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 GCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCG 180 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 GCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTAC 240 consensus_9733#1 --------------GGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTAC 46 ********************************************** consensus_9733#0 GCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAG-GAGGA 299 consensus_9733#1 GCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCCCTGCATC 106 **************************************************** * consensus_9733#0 AGGGATCGAGGTGGCG--TGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCG 357 consensus_9733#1 CTCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACGCCGGCCAGGTGTTC 166 * ** * * ** * * *** * ** ***** ** * consensus_9733#0 GCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCAC 417 consensus_9733#1 GACACGGTCATATGCCTCTTCTGCTGGATG----ATCTGGAAAGAAAGGAGCACAAGAGT 222 * ** *** ***** * * * ** ** * *** ** consensus_9733#0 ATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACC 477 consensus_9733#1 CTTTGAAGCCTTCACCCA--CTAGTTACTGTAGGTCGCAGAT-TGCACAATTGATGAGCG 279 * ** * *** ** * * * *** * *** *** * * consensus_9733#0 GAGGTC-TGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGT 536 consensus_9733#1 GAGGACATGGAAGATGGCTGGACTAGGTGCCTAGCATAGC-ACAACAGATTGGTAACC-T 337 **** * ** * * * ** * * ** * * * ** * ** ** * consensus_9733#0 CAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCA 596 consensus_9733#1 GAAGTGTAGCATTGTGCCGACGAGCCCAGGTCATCAGGCACTTTGCCTTGGTTTTATG-A 396 *** ** * * ** *** * * * *** ** * * consensus_9733#0 CGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCA-ACGTCTTCATCAACGGCAACA 655 consensus_9733#1 CAGGGCTCGCTTCG--CATCTCAGTCTCACGCCCGATATGCTTCATCCTCTGTGTTTTGG 454 * * ** ** ** * * **** * * * ** ** ** * consensus_9733#0 CCGGCCAGGT-CAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTG 714 consensus_9733#1 CTGAGCATTTACAAAGTCTATAAATTTTTACCCCCTCCCTCCTTAATACAAGTTCGGTCG 514 * * ** * *** ** * * * * * * * * * * consensus_9733#0 GCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTAC 774 consensus_9733#1 GCATTCTTTGTC---AGCCCAGCGAAAAAAATAGTTTTGTTGGAGTCTTTGTGGTTGTAT 571 ** * ** ** * ** * ** * * * ** * * *** consensus_9733#0 ACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAG 834 consensus_9733#1 TTCGTACCAAT--ACTTGTTCTTGCATC---TCTTTGTACTAATTGTAGNGCCACCTCAA 626 * * * ** * * ** * * * * ** ** * * * * * * consensus_9733#0 ATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGTCACCCGGGGCGTC 894 consensus_9733#1 ATTTTATA----GTACTTGGCA-TGCTATTTAATGCTATGA-ACTCTCAAGTGAGGTGAA 680 ** ** * * ** * * * *** * * *** * ** * consensus_9733#0 CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGC 954 consensus_9733#1 ATGTTAACTG------AACAAGTAATAAATATCGATTGGTGG------------------ 716 * * * * * * * *** * consensus_9733#0 ATCGGCCAGCCCCGGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCC 1014 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 GGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGT 1074 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 ACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAG 1134 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 CTCCAGCGAGTAGCAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTG 1194 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 TAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCT 1254 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 TTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTT 1314 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 GGCTTTGGCAATGCGTGTCAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAA 1374 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 GGTGTGAGATTTCCATGAGCTGGATGCTGGAGTTTATA 1412 consensus_9733#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||