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Oryza sativa
cluster # 9744 cluster # 9744       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9744#0 length = 1777 sequences # 3  
consensus_9744#1 length = 1266 sequences # 1  
consensus_9744#2 length = 1102 sequences # 2  

consensusID : consensus_9744#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1777
fasta sequence
                              [TTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAGGTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGGGGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCGGTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGGTGTACGAGACGCGGCTCGGGGTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTCAGCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCGTCGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGAGTGCTACGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGACCGTCGCGGTGCGGGTCCGGCCGTGGCTGCTGTGGCGGCGGCGCGGGTCGAAGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGGGACCTCACGCGCGCGCGGTTCGCCTGCCCAGGCTCGCCCGAACCGTCGTCGGGGTACTTCGTCGCCGTCGTGGTCGACGGCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCGTACAGGAAGACGAAAGCGCGGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGGAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGACGGCGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTCGACCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCA-TGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCACTTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGA-CCAATTGTTCATTAGTAAATTTCAAAG-CCAAGAAATCAAACAGATAGAAGAGTTAGAGAAGTCGTATTTATGATCCCCTGGTCTTCCTTTTTCCAAATTAGGTGGCGAATTTGCTTAGTAATTGGCTAATTCCCTCAAGTCATCTGGTTGGTTGATTAAAAAAAAAA]

[+] EMBL AK106445             [TTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAGGTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGGGGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCGGTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGGTGTACGAGACGCGGCTCGGGGTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTCAGCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCGTCGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGAGTGCTACGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGACCGTCGCGGTGCGGGTCCGGCCGTGGCTGCTGTGGCGGCGGCGCGGGTCGAAGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGGGACCTCACGCGCGCGCGGTTCGCCTGCCCAGGCTCGCCCGAACCGTCGTCGGGGTACTTCGTCGCCGTCGTGGTCGACGGCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCGTACAGGAAGACGAAAGCGCGGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGGAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGACGGCGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTCGACCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCA TGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCA TTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGT                                                                                                                                                                                                       ]
[+] EMBL BQ908503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGA CGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCANTGGCTTCTCCCTCCTCGTNTACGCCTGGAAATGCTAGCCATTGGCGCCGAGCAAAGCATTCTTTCCACTTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCNATTGTTATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGACCCAATTGTTCATTAGTAAATTTCAAAGCCCAAGAAATCAAACAGATAGAAGAGTTAGAGAAGTCGTATTTATGATCCCCTGGTCTTCCTTTTTCCAAATTAGGTGGCGAATTTGCTTAGTAATTGGCTAATTCCCTCAAGTCATCTGGTTGGTTGATTAAAAAAAAAA]
[+] EMBL BI805981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCA TGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGC ATTGGCGCCGAGCAAAGCATTCTTTCCACTTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGC ATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGA CCAATTGTTCATTAGTAAATTTCAAAG CCAAGAAATCAAACAGATAGAAGAGTTAGAGAAGTCGTATTTAaaaa                                                                                             ]


>consensus_9744#0 TTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAGG TCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGGG GGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCGG TGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGGT GTACGAGACGCGGCTCGGGGTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTCAG CCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCGTC GTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGAGTGCTACGGGGGGGA GGAGGAGGAGGAGGAGGAGGAGGCGACCGTCGCGGTGCGGGTCCGGCCGTGGCTGCTGTG GCGGCGGCGCGGGTCGAAGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGGGA CCTCACGCGCGCGCGGTTCGCCTGCCCAGGCTCGCCCGAACCGTCGTCGGGGTACTTCGT CGCCGTCGTGGTCGACGGCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCGTA CAGGAAGACGAAAGCGCGGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGGA GCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCG CGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGA CAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGACGG CGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTCGA CCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAA CCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGC CGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGA GGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGC AGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAA CCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTC GGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCC CGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATG CTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCACTTGATGATGATTGATGGTAATTCAG TGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGT TATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGACCAATTGTTC ATTAGTAAATTTCAAAGCCAAGAAATCAAACAGATAGAAGAGTTAGAGAAGTCGTATTTA TGATCCCCTGGTCTTCCTTTTTCCAAATTAGGTGGCGAATTTGCTTAGTAATTGGCTAAT TCCCTCAAGTCATCTGGTTGGTTGATTAAAAAAAAAA



consensusID : consensus_9744#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1266
fasta sequence
                              [CTTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAGGTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGGGGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCGGTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGGTGTACGAGACGCGGCTCGGGGTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTCAGCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCGTCGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGGAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGACGGCGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTCGACCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGT]

[+] EMBL AK101668             [CTTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAGGTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGGGGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCGGTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGGTGTACGAGACGCGGCTCGGGGTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTCAGCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCGTCGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGGAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGACGGCGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTCGACCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGT]


>consensus_9744#1 CTTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAG GTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGG GGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCG GTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGG TGTACGAGACGCGGCTCGGGGTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTCA GCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCGT CGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGGAGCACGTGTCGATG CGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGG GAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGAC AAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGACGGCGAGCGCGTGCTC CACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTCGACCTCGGCGGCGGC GACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCC CCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTC CGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAG CACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGG AGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGG GGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCC TCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAG CTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCG CCGAGCAAAGCATTCTTTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTT CTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGT TCTTGT



consensusID : consensus_9744#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1102
fasta sequence
                              [AGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGGGACCTCACGCGCGCGCGGTTCGCCTGCCCAGGCTCGCCCCAACCGTCGTCGGGGTACTTCGTCGCCGTCGTGGTCGACGGCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCGTACAGGAAGACGAAAGCGCGGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGGAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGACCAAATTGTTCATTAGTAAATTTCAAAGCCAAAGAAATCAAACAGATAGAAGAGTTAGAGAA]

[+] EMBL CB662515             [AGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGGGACCTCACGCGCGCGCGGTTCGCCTGCCCAGGCTCGCCCCAACCGTCGTCGGGGTACTTCGTCGCCGTCGTGGTCGACGGCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCGTACAGGAAGACGAAAGCGCGGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGGAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGA                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB662516             [                                                                                                                                                                                                                                                                                                                                                              AAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTTTTCCCCAACCGAGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTTTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGACCAAATTGTTCATTAGTAAATTTCAAAGCCAAAGAAATCAAACAGATAGAAGAGTTAGAGAA]


>consensus_9744#2 AGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGGGACCTCACGCGCGCGCGGT TCGCCTGCCCAGGCTCGCCCCAACCGTCGTCGGGGTACTTCGTCGCCGTCGTGGTCGACG GCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCGTACAGGAAGACGAAAGCGC GGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGGAGCACGTGTCGATGCGCG ACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTCCGCGGCAAGGAACGGGAGA TCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGGGACAAGGACAAGGACAAGG AGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGGCGGCGACGGCGTCCAGGTCT CCTGGGACCTCCACCACTGGCTCTTCCCCAACCGCGACACGGCCCCCGCCGACGCCTCCG CGGTCACCCCGCCTCCCCAGCCCGCCCACGCCGTCTTCATCTTCCGCTTCGAGCTCGCCG ACATCGCCGGCGACGACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACG CCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGGCTACCTCGGGAGGTGGGGGCGAGGGG ACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCCGGAGGC TGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGA GCGGCTCGACGGTGATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCATG GCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTAGCAATTGGCGCCGAGCAAAGCATTCT TTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTCTTCTAT CTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGTGCAGTTTTTG AAAATTGTTTCATCAGCTGACCAAATTGTTCATTAGTAAATTTCAAAGCCAAAGAAATCA AACAGATAGAAGAGTTAGAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9744#0      -TTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAG 59
consensus_9744#1      CTTTCCTCCTCTCTCTCTCTCCCCCTTCGCCGTAGACGCGAACGCCGCGGCGGCGAGAAG 60
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      GTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGG 119
consensus_9744#1      GTCACGGCGAGGGGAGCTCGTGTCGAGGCGAGGCGAGGTGGGGGTTGATTATGCCCGAGG 120
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      GGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCG 179
consensus_9744#1      GGGGGATACCGGCATGCTTCCGCGGCGCGCCGGGAGGGGGCGCGGGAGGGGGCGGTGGCG 180
consensus_9744#2      --------------------------------------AGCGGTTCCGCGTGCGGGACCG 22
                                                             ***     * * ****   **

consensus_9744#0      GTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGG 239
consensus_9744#1      GTGGCGTGGGCGTGGCGGGGCAGTCGTCAGGGGGCGTGGGGACTAGCCTGGCGACGTCGG 240
consensus_9744#2      GCGG-GTCGACCTGGCGTGG--GACCTCACGCG-CGCGCGG-TTCGCCTGCCCAGGCT-- 75
                      * ** ** * * ***** **  * * *** * * ** * **  * ***** * * *    

consensus_9744#0      TGTACGAGACGCGGCTCGGG-GTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTC 298
consensus_9744#1      TGTACGAGACGCGGCTCGGG-GTTGCGGCGCTGTCGTGGTCGCGCGCGGCGCTCGGGCTC 299
consensus_9744#2      CGCCCCAACCGTCGTCGGGGTACTTCGTCGCCGTCGTGGTCG-ACGGCGAGATGGCGCTC 134
                       *  * *  **  *   ***   * ** *** **********  **  * * * * ****

consensus_9744#0      AGCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCG 358
consensus_9744#1      AGCCTCCGTGTCGTGCTCCGCGTGGCGGGCGGGGCGGGGGCGGGGGCGTGGGCCGCGGCG 359
consensus_9744#2      ---------GTCGCGGGCGACATGGCGGAGGAGGCGTACAGGAAGACGAAAGC-GCGGCG 184
                               **** *  *  * ******  * ****     *  * **   ** ******

consensus_9744#0      TCGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGGAGTGCTACGGGGGG 418
consensus_9744#1      TCGTCCTCGGCGGCGTCGGATTACGGGTGCTACGACGAGGGGGCGG-------------- 405
consensus_9744#2      -CGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGGG--------------------- 222
                       ** ** ****  ** **   * *   *    ** ** *                     

consensus_9744#0      GAGGAGGAGGAGGAGGAGGAGGAGGCGACCGTCGCGGTGCGGGTCCGGCCGTGGCTGCTG 478
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      TGGCGGCGGCGCGGGTCGAAGCGGTTCCGCGTGCGGGACCGGCGGGTCGACCTGGCGTGG 538
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      GACCTCACGCGCGCGCGGTTCGCCTGCCCAGGCTCGCCCGAACCGTCGTCGGGGTACTTC 598
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      GTCGCCGTCGTGGTCGACGGCGAGATGGCGCTCGTCGCGGGCGACATGGCGGAGGAGGCG 658
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      TACAGGAAGACGAAAGCGCGGCGCGGCCCCGGCCCCGACGCCGTCCTCATCTCCCGGCGG 718
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      GAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTC 778
consensus_9744#1      GAGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTC 465
consensus_9744#2      -AGCACGTGTCGATGCGCGACGCGGGGCACGGCCGCGGCCACAAGACCTTCGTCAACGTC 281
                       ***********************************************************

consensus_9744#0      CGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGG 838
consensus_9744#1      CGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGG 525
consensus_9744#2      CGCGGCAAGGAACGGGAGATCTCGGTGGATCTCGTGTCGCGCGGCCACGGCAAGGACAGG 341
                      ************************************************************

consensus_9744#0      GACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGAC 898
consensus_9744#1      GACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCGAC 585
consensus_9744#2      GACAAGGACAAGGACAAGGAGAGGGACAAGGCCGACGTCGGCATGTCGGTCACCGTCG-- 399
                      **********************************************************  

consensus_9744#0      GGCGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTC 958
consensus_9744#1      GGCGAGCGCGTGCTCCACATCCGGCGCCTGCGCTGGAAGTTCCGCGGCACCGAGAAGGTC 645
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      GACCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCC 1018
consensus_9744#1      GACCTCGGCGGCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCC 705
consensus_9744#2      ----------GCGGCGACGGCGTCCAGGTCTCCTGGGACCTCCACCACTGGCTCTTCCCC 449
                                **************************************************

consensus_9744#0      AACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCAC 1078
consensus_9744#1      AACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCAC 765
consensus_9744#2      AACCGCGACACGGCCCCCGCCGACGCCTCCGCGGTCACCCCGCCTCCCCAGCCCGCCCAC 509
                      ************************************************************

consensus_9744#0      GCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCC 1138
consensus_9744#1      GCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCC 825
consensus_9744#2      GCCGTCTTCATCTTCCGCTTCGAGCTCGCCGACATCGCCGGCGACGACCGCGACTCTGCC 569
                      ************************************************************

consensus_9744#0      GAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGG 1198
consensus_9744#1      GAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGG 885
consensus_9744#2      GAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGG 629
                      ************************************************************

consensus_9744#0      GCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAG 1258
consensus_9744#1      GCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAG 945
consensus_9744#2      GCAGGCTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAG 689
                      ************************************************************

consensus_9744#0      AACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCG 1318
consensus_9744#1      AACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCG 1005
consensus_9744#2      AACCGGAGGAAGAGGGGGCAAGCCCGGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCG 749
                      ************************************************************

consensus_9744#0      TCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGC 1378
consensus_9744#1      TCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGC 1065
consensus_9744#2      TCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTGATGGACTGGGCGAGC 809
                      ************************************************************

consensus_9744#0      CCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAA 1438
consensus_9744#1      CCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAA 1125
consensus_9744#2      CCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAA 869
                      ************************************************************

consensus_9744#0      TGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCACTTGATGATGATTGATGGTAATTC 1498
consensus_9744#1      TGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCA-TTGATGATGATTGATGGTAATTC 1184
consensus_9744#2      TGCTAGCAATTGGCGCCGAGCAAAGCATTCTTTCCA-TTGATGATGATTGATGGTAATTC 928
                      ************************************ ***********************

consensus_9744#0      AGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATT 1558
consensus_9744#1      AGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATT 1244
consensus_9744#2      AGTGAGATTTTTTCTTCTTCTTCTTCTTCTATCTTCTTCGGATTGTTGTAAGTTGCAATT 988
                      ************************************************************

consensus_9744#0      GTTATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGACCAATTGT 1618
consensus_9744#1      GTTATCCGAGCAATGTTCTTGT-------------------------------------- 1266
consensus_9744#2      GTTATCCGAGCAATGTTCTTGTGCAGTTTTTGAAAATTGTTTCATCAGCTGACCAAATTG 1048
                      **********************                                      

consensus_9744#0      TCATTAGTAAATTTCAAAGCCAAGAAATCAAACAGATAGAAGAGTTAGAGAAGTCGTATT 1678
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      TTCATTAGTAAATTTCAAAGCCAAAGAAATCAAACAGATAGAAGAGTTAGAGAA------ 1102
                                                                                  

consensus_9744#0      TATGATCCCCTGGTCTTCCTTTTTCCAAATTAGGTGGCGAATTTGCTTAGTAATTGGCTA 1738
consensus_9744#1      ------------------------------------------------------------
consensus_9744#2      ------------------------------------------------------------
                                                                                  

consensus_9744#0      ATTCCCTCAAGTCATCTGGTTGGTTGATTAAAAAAAAAA 1777
consensus_9744#1      ---------------------------------------
consensus_9744#2      ---------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)