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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1154 fasta sequence
[TCCGCATCGCGGTCGCAGTGGTGGTGTGCCGGCGGCGGTGGAAGAGGAAGAGGAAGACGAAGAAGCAGCAGCCAGCAGCAGGTATGCCCGCGCCAAGACCATCCATCCCCTAGGCCCTAGCTACCCCGTCCATCCCCCTCGCCTGAAACTTCCTTCGCCGATCTATCTCCGTCCATCCTCCGCTCGCCGTCGCCGTCCTTGTGCCTCCGCATCCTCGCCCACCGGTCTCTGCTACACACTACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGGAGACTAGTAGACCCCATGCCCGACCGAAGGTCAAGATTTTGGCAGATGGATTCCCAACCCACCGAGCTCATCTGTCCCATGCCTCGCCGCCCGTCACCCCGCCCTCCTTTCCTATCCGACTCCATCAACAGGACATTACCGGTGTACAGAGCTGACTCTGCTTCTGATGTCCTCGACCTCATCCTCAGTAAGAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGTGGGCTTTTTCTGTGGCTCACCTCCTGTGCGCGCTAACAACCCCATTGTCCATGATCCACAGTTTGGTAAAAACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTGGAAGAGCTGAAGTAGGTTCTCCATCTTGCGGGGCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTAACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGGCATAAATTAGTTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCATTAGTCTGCTCGTGCCCAGTTCCAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL AK073341 [TCCGCATCGCGGTCGCAGTGGTGGTGTGCCGGCGGCGGTGGAAGAGGAAGAGGAAGACGAAGAAGCAGCAGCCAGCAGCAGGTATGCCCGCGCCAAGACCATCCATCCCCTAGGCCCTAGCTACCCCGTCCATCCCCCTCGCCTGAAACTTCCTTCGCCGATCTATCTCCGTCCATCCTCCGCTCGCCGTCGCCGTCCTTGTGCCTCCGCATCCTCGCCCACCGGTCTCTGCTACACACTACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGGAGACTAGTAGACCCCATGCCCGACCGAAGGTCAAGATTTTGGCAGATGGATTCCCAACCCACCGAGCTCATCTGTCCCATGCCTCGCCGCCCGTCACCCCGCCCTCCTTTCCTATCCGACTCCATCAACAGGACATTACCGGTGTACAGAGCTGACTCTGCTTCTGATGTCCTCGACCTCATCCTCAGTAAGAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGTGGGCTTTTTCTGTGGCTCACCTCCTGTGCGCGCTAACAACCCCATTGTCCATGATCCACAGTTTGGTAAAAACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTGGAAGAGCTGAAGTAGGTTCTCCATCTTGCGGGGCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTAACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGGCATAAATTAGTTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCA ]
[+] EMBL C28132 [ GGTGGAAGAGGAAGAGGAAGACGAAGAAGCAGCAGCCAGCAGCAGGTATGCCCGCGCCAAGACCATCCATCCCCTAGGCCCTAGCTACCCCGTCCATCCCCCTCGCCTGAAACTTCCTTCGCCGATCTATCTCCGTCCATCCTCCGCTCGCCGTCGCCGTCCTTGTGCCTCCGCATCCTCGCCCACCGGTCTCTGCTACACACTACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGGAGA ]
[+] EMBL CA765894 [ GTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTAACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGGCATAAATTAGTTTATTTTAGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCCGTAGCTATATCATCTTGTGTGTGTACAGAAAGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGCAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCATTAGTCTGCTCGTGCCCAGTTCCAAAAAAAAAAAAAAAAAAAAAAC]
consensusID : consensus_9749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 974 fasta sequence
[GCAGTGGTGGTGTGCCGGCGGCGGTGGAAGAGGAAGAGGAAGACGAAGAAGCAGCAGCCAGCAGCAGGTCTCTGCTACACACTACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGGAGACTAGTAGACCCCATGCCCGACCGAAGGTCAAGATTTTGGCAGATGGATTCCCAACCCACCGAGCTCATCTGTCCCATGCCTCGCCGCCCGTCACCCCGCCCTCCTTTCCTATCCGACTCCATCAACAGGACATTACCGGTGTACAGAGCTGACTCTGCTTCTGATGTCCTCGACCTCATCCTCAGTAAGAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGTGGGCTTTTTCTGTGGCTCACCTCCTGTGCGCGCTAACAACCCCATTGTCCATGATCCACAGTTTGGTAAAAACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTGGAAGAGCTGAAGTAGGTTCTCCATCTTGCGGGGCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTG-CAGTCACCTTTGCCTGAGCATTCT-CATTGACCCTAACGCTATCCTG-CCACCAAAACTTGTAAATTTT-CCGTGTGCTG-AGGAGGGCATAAATTAGTTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCATTAGTCTGCTCGNNNCCAAAAAA]
[+] EMBL AK063894 [GCAGTGGTGGTGTGCCGGCGGCGGTGGAAGAGGAAGAGGAAGACGAAGAAGCAGCAGCCAGCAGCAGGTCTCTGCTACACACTACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGGAGACTAGTAGACCCCATGCCCGACCGAAGGTCAAGATTTTGGCAGATGGATTCCCAACCCACCGAGCTCATCTGTCCCATGCCTCGCCGCCCGTCACCCCGCCCTCCTTTCCTATCCGACTCCATCAACAGGACATTACCGGTGTACAGAGCTGACTCTGCTTCTGATGTCCTCGACCTCATCCTCAGTAAGAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGTGGGCTTTTTCTGTGGCTCACCTCCTGTGCGCGCTAACAACCCCATTGTCCATGATCCACAGTTTGGTAAAAACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTGGAAGAGCTGAAGTAGGTTCTCCATCTTGCGGGGCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTG CAGTCACCTTTGCCTGAGCATTCT CATTGACCCTAACGCTATCCTG CCACCAAAACTTGTAAATTTT CCGTGTGCTG AGGAGGGCATAAATTAGTTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCAT ]
[+] EMBL C97393 [ ATCTTGCGGGNCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTGTCAGTCACCTTTGCCTGAGCATTCTGCATTGACCCTAACGCTATCCTGNCCACCAAAACTTGTAAATTTTNCCGTGTGCTGTAGGAGGGCATAAATTAGTTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCATTAGTCTGCTCGNNNCCAAAAAA]
consensusID : consensus_9749#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[GAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGGAGTTCTTTCGCAAAAGTCTGCTGGAAGAGCTGAAGTAGGTTCTCCATCTTGCGGGGCGACAGCCCAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTAACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGGGCATAAATTAGTTTATTTTAGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCATTAAAAAAA]
[+] EMBL BI808411 [GAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGGAGTTCTTTCGCAAAAGTCTGCTGGAAGAGCTGAAGTAGGTTCTCCATCTTGCGGGGCGACAGCCCAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTAACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGGGCATAAATTAGTTTATTTTAGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGCTATATCATCTTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATCAATCGATCAATTAATGTGAAAAATCCTCATTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9749#0 TCCGCATCGCGGTCGCAGTGGTGGTGTGCCGGCGGCGGTGGAAGAGGAAGAGGAAGACGA 60
consensus_9749#1 ------------------------------------------------------------
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 AGAAGCAGCAGCCAGCAGCAGGTATGCCCGCGCCAAGACCATCCATCCCCTAGGCCCTAG 120
consensus_9749#1 ------------------------------------------------------------
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 CTACCCCGTCCATCCCCCTCGCCTGAAACTTCCTTCGCCGATCTATCTCCGTCCATCCTC 180
consensus_9749#1 -------------------------------GCAGTGGTGGTGTGCCGGCGGCGGTGG-- 27
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 CGCTCGCCGTCGCCGTCCTTGTGCCTCCGCATCCTCGCCCACCGGTCTCTGCTACACACT 240
consensus_9749#1 AAGAGGAAGAGGAAGACG--AAGAAGCAGCAGCC--AGCAGCAGGTCTCTGCTACACACT 83
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 ACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGG 300
consensus_9749#1 ACACTCAAGAGAGCGAGAGGCATGGAACACTACTCGACCAAGTTCAGCAATGGAGGAGGG 143
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 AGACTAGTAGACCCCATGCCCGACCGAAGGTCAAGATTTTGGCAGATGGATTCCCAACCC 360
consensus_9749#1 AGACTAGTAGACCCCATGCCCGACCGAAGGTCAAGATTTTGGCAGATGGATTCCCAACCC 203
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 ACCGAGCTCATCTGTCCCATGCCTCGCCGCCCGTCACCCCGCCCTCCTTTCCTATCCGAC 420
consensus_9749#1 ACCGAGCTCATCTGTCCCATGCCTCGCCGCCCGTCACCCCGCCCTCCTTTCCTATCCGAC 263
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 TCCATCAACAGGACATTACCGGTGTACAGAGCTGACTCTGCTTCTGATGTCCTCGACCTC 480
consensus_9749#1 TCCATCAACAGGACATTACCGGTGTACAGAGCTGACTCTGCTTCTGATGTCCTCGACCTC 323
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 ATCCTCAGTAAGAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGTGGGCTTTTTC 540
consensus_9749#1 ATCCTCAGTAAGAATGACCCTGATGTTGATACTGATTCGAGCACCCAGGTGGGCTTTTTC 383
consensus_9749#2 ------------------------------------------------------------
consensus_9749#0 TGTGGCTCACCTCCTGTGCGCGCTAACAACCCCATTGTCCATGATCCACAGTTTGGTAAA 600
consensus_9749#1 TGTGGCTCACCTCCTGTGCGCGCTAACAACCCCATTGTCCATGATCCACAGTTTGGTAAA 443
consensus_9749#2 --------------------------------------GAATGACCCTGATGTTGATACT 22
**** ** * *** **
consensus_9749#0 AACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTGGAAGAGCT 660
consensus_9749#1 AACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTGGAAGAGCT 503
consensus_9749#2 GA----------TTCGAGCACCCAGGGAGTTCTTTCGC--AAAAGTCTGCTGGAAGAGCT 70
* ** * ************** ********************
consensus_9749#0 GAAGTAGGTTCTCCATCTTGCGGGGCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCT 720
consensus_9749#1 GAAGTAGGTTCTCCATCTTGCGGGGCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCT 563
consensus_9749#2 GAAGTAGGTTCTCCATCTTGCGGGGCGA-CAGCCCAAA-GTTAGAATTGAAGGTTTTGCT 128
************************** * ********* *********************
consensus_9749#0 TGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTA 780
consensus_9749#1 TGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTA 623
consensus_9749#2 TGTGGGAACAAGGAGCCCCACTGTGCAGTCACCTTTGCCTGAGCATTCTCATTGACCCTA 188
************************************************************
consensus_9749#0 ACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGG-CATAAATTAG 839
consensus_9749#1 ACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGG-CATAAATTAG 682
consensus_9749#2 ACGCTATCCTGCCACCAAAACTTGTAAATTTTCCGTGTGCTGAGGAGGGGCATAAATTAG 248
************************************************* **********
consensus_9749#0 TTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTT 899
consensus_9749#1 TTTATTTTGGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTT 742
consensus_9749#2 TTTATTTTAGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGATTGTGGCTTTT 308
******** ***************************************************
consensus_9749#0 GAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGC 959
consensus_9749#1 GAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGC 802
consensus_9749#2 GAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCTGTAGC 368
************************************************************
consensus_9749#0 TATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTC 1019
consensus_9749#1 TATATCATCTTGTGTGTGTACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTC 862
consensus_9749#2 TATATCATCTTGTGTG--TACAAAAGGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTC 426
**************** ******************************************
consensus_9749#0 TGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATC 1079
consensus_9749#1 TGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATC 922
consensus_9749#2 TGTAAATATGTGTCGGTCAGTCTGTAAATACTGTAGTGTACTGGCATGTAAGATGCAATC 486
************************************************************
consensus_9749#0 AATCGATCAATTAATGTGAAAAATCCTCATTAGTCTGCTCGTGCCCAGTTCCAAAAAAAA 1139
consensus_9749#1 AATCGATCAATTAATGTGAAAAATCCTCATTAGTCTGCTCGNNNCCA-----AAAAA--- 974
consensus_9749#2 AATCGATCAATTAATGTGAAAAATCCTCATTAAAAAAA---------------------- 524
********************************
consensus_9749#0 AAAAAAAAAAAAAAC 1154
consensus_9749#1 ---------------
consensus_9749#2 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||