These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1713 fasta sequence [GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGATGTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCTTTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACACCAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCTGCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCATAGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTGTCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTAATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTT-GGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCTCTAATATTTATTCTTTT-TTGCGAAACTTTCTAATACTTATTCTGATCTTGGATATTTGTGCAAGTGTGTTTTTGTTGCTTCGTTCTTCCTTTCAAGATCAACTGTACCTGAAAATTCTAGAGCATGTTTACGCTATGTTAAAAAAA] [+] EMBL AK066589 [GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGATGTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCTTTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACACCAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCTGCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCATAGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTGTCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTAATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTT GGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCTCTAATATTTATTCTTTT TTGCGAAACTTTCTAATACTTATTCTGATCTTGGA ] [+] EMBL AK101543 [GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGATGTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCTTTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACACCAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCTGCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCATAGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTGTCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTAATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTT AATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTT GGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTT ] [+] EMBL CA764249 [ CTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCGTCATCTTGTGCCATTTGCTTGGAAGACTGCAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGCCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTTCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGGAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGNTCTGACTATGGATCTGNCAGCCTGGGNTTATCCCATGATTNCCGGTCTCACCATGGATCTCCGAGNTATTATCATAGCTCTTTGGGCCAGCAACGNTCTTACCTGATGCACCGGACCGAGTCANGGCCAAGCCTGTCTACTATGGNGCTNCAGTCG CNCAATAGAGTCAGTAGCAGTNCAATGGCGAATCAGGANAAG CTATCAGCTGNGGGTTAACTCGATCATTACGTCAGGCCTA ] [-] EMBL CA882849 [ CTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGAGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTT CAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCT ] [+] EMBL BQ906199 [ ACAC AAACTGCCAGGTTCATGCAAAGTTCATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTTCGGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCTCTAATATTTATTCTTTTCTTGCGAAACTTTCTAATACTTATTCTGATCTTGGATATTTGTGCAAGTGTGTTTTTGTTGCTTCGTTCTTCCTTTCAAGATCAACTGTACCTGAAAATTCTAGAGCATGTTTACGCTATGTTAAAAAAA] consensusID : consensus_9750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [TGCTCCAGTCGCCCACATAGAGTCAGTACCAGTACAGATGGCGAATCCAGGAGAAGTCTACATCGGATCAGTTGCTACCAAGATCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTCAAGCACCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTCATTCATGGAACTATTTCGTGCCAGCCACCACTTGTGATTCACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCCTGAAGAAGCCAATATCCATCACGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCT] [+] EMBL BI809002 [TGCTCCAGTCGCCCACATAGAGTCAGTACCAGTACAGATGGCGAATCCAGGAGAAGTCTACATCGGATCAGTTGCTACCAAGATCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTCAAGCACCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTCATTCATGGAACTATTTCGTGCCAGCCACCACTTGTGATTCACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCCTGAAGAAGCCAATATCCATCACGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9750#0 GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGAT 60 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 GTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCT 120 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACAC 180 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 CAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGT 240 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 CAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACA 300 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTG 360 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 CCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACA 420 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAG 480 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCT 540 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAG 600 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATAT 660 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCA 720 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTG 780 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCT 840 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 GCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCAT 900 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 AGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTG 960 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGA 1020 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 GAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCT 1080 consensus_9750#1 ----------TGCTCCAGTC--GCCCA--CATAGAGTCAGTACCA-GTACAG----ATGG 41 *** * ** * * *** ***** * * ****** * consensus_9750#0 TGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATT 1140 consensus_9750#1 CGAATCCAGGAGAAGTCT----------ACATCGGATCAGTTGCTACCAAGAT-CTGATT 90 ** ** **** * ************* *********** ****** consensus_9750#0 GATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCT 1200 consensus_9750#1 GATCTTACGAAGTTCACTGTTTCATGAGCATTTGTCAAGCACCCTGCTAGATTTGTTCCT 150 *********************************** * ******************* consensus_9750#0 GGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAA 1260 consensus_9750#1 GGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAA 210 ************************************************************ consensus_9750#0 GTTAATTCATGGAACTATTTCGTGCCAGCCACCA-TTGTGATTCAACAAGGTTACTTACA 1319 consensus_9750#1 GTTCATTCATGGAACTATTTCGTGCCAGCCACCACTTGTGATTCA-CAAGGTTACTTACA 269 *** ****************************** ********** ************** consensus_9750#0 TTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGC 1379 consensus_9750#1 TTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGC 329 ************************************************************ consensus_9750#0 -TGAAGAAGCAAATATCCATCA-GTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGA 1437 consensus_9750#1 CTGAAGAAGCCAATATCCATCACGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGA 389 ********* *********** ************************************* consensus_9750#0 GGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAG 1497 consensus_9750#1 GGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAG 449 ************************************************************ consensus_9750#0 TTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTT 1557 consensus_9750#1 TTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTT 509 ************************************************************ consensus_9750#0 TTGTAGCTCTCTAATATTTATTCTTTTTTGCGAAACTTTCTAATACTTATTCTGATCTTG 1617 consensus_9750#1 TTGTAGCTCT-------------------------------------------------- 519 ********** consensus_9750#0 GATATTTGTGCAAGTGTGTTTTTGTTGCTTCGTTCTTCCTTTCAAGATCAACTGTACCTG 1677 consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 AAAATTCTAGAGCATGTTTACGCTATGTTAAAAAAA 1713 consensus_9750#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||