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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1713 fasta sequence
[GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGATGTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCTTTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACACCAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCTGCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCATAGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTGTCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTAATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTT-GGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCTCTAATATTTATTCTTTT-TTGCGAAACTTTCTAATACTTATTCTGATCTTGGATATTTGTGCAAGTGTGTTTTTGTTGCTTCGTTCTTCCTTTCAAGATCAACTGTACCTGAAAATTCTAGAGCATGTTTACGCTATGTTAAAAAAA]
[+] EMBL AK066589 [GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGATGTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCTTTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACACCAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCTGCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCATAGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTGTCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTAATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTT GGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCTCTAATATTTATTCTTTT TTGCGAAACTTTCTAATACTTATTCTGATCTTGGA ]
[+] EMBL AK101543 [GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGATGTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCTTTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACACCAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCTGCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCATAGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTGTCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTAATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTT AATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTT GGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTT ]
[+] EMBL CA764249 [ CTGTAACCCGGGAATTTCATGGAATGAGCAGTCAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACATCGTCATCTTGTGCCATTTGCTTGGAAGACTGCAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGCCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTTCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCATCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGGAGTGGCCATTTGTCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGNTCTGACTATGGATCTGNCAGCCTGGGNTTATCCCATGATTNCCGGTCTCACCATGGATCTCCGAGNTATTATCATAGCTCTTTGGGCCAGCAACGNTCTTACCTGATGCACCGGACCGAGTCANGGCCAAGCCTGTCTACTATGGNGCTNCAGTCG CNCAATAGAGTCAGTAGCAGTNCAATGGCGAATCAGGANAAG CTATCAGCTGNGGGTTAACTCGATCATTACGTCAGGCCTA ]
[-] EMBL CA882849 [ CTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTGCCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGAGGAAGACATTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAGTCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCTTTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAGTCCACATCCCGCGCTTACTCCATTT CAGTGCCCCCCGCAATTATAACCTTCAAAGATATTACACTAACTCACCT ]
[+] EMBL BQ906199 [ ACAC AAACTGCCAGGTTCATGCAAAGTTCATTCATGGAACTATTTCGTGCCAGCCACCATTGTGATTCAACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCTGAAGAAGCAAATATCCATCAGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTTCGGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCTCTAATATTTATTCTTTTCTTGCGAAACTTTCTAATACTTATTCTGATCTTGGATATTTGTGCAAGTGTGTTTTTGTTGCTTCGTTCTTCCTTTCAAGATCAACTGTACCTGAAAATTCTAGAGCATGTTTACGCTATGTTAAAAAAA]
consensusID : consensus_9750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[TGCTCCAGTCGCCCACATAGAGTCAGTACCAGTACAGATGGCGAATCCAGGAGAAGTCTACATCGGATCAGTTGCTACCAAGATCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTCAAGCACCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTCATTCATGGAACTATTTCGTGCCAGCCACCACTTGTGATTCACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCCTGAAGAAGCCAATATCCATCACGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCT]
[+] EMBL BI809002 [TGCTCCAGTCGCCCACATAGAGTCAGTACCAGTACAGATGGCGAATCCAGGAGAAGTCTACATCGGATCAGTTGCTACCAAGATCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTCAAGCACCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAAGTTCATTCATGGAACTATTTCGTGCCAGCCACCACTTGTGATTCACAAGGTTACTTACATTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGCCTGAAGAAGCCAATATCCATCACGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGAGGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAGTTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTTTTGTAGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9750#0 GCGGTATTCCTCTCTAAGGCTTCAGGAGAGGTTTTGAAGAAATATTCAGGTCAAAGTGAT 60
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 GTAGAGGTGTGGATACTACCAGTATATGAAAACTCAGCTTGGTCTATCATGGCAATTTCT 120
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TTCACATCACTGCTTGCTATGGCTGCTGTTCTAGCTACTTGTTTCTTTGTGAGGAGACAC 180
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 CAGATAAGGCGGGACAGGGGAAGGATTCCTGTAACCCGGGAATTTCATGGAATGAGCAGT 240
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 CAATTGGTTAAAGCAATGCCAAGTCTTATTTTTACAAAAGTGCAAGAAGACAATAGTACA 300
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TCATCATCTTGTGCCATTTGCTTGGAAGACTACAGTTTTGGAGAAAAGCTAAGAGTGTTG 360
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 CCTTGTCGTCACAAGTTCCATGCGACTTGTGTGGACATGTGGTTGACCTCGTGGAAGACA 420
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TTCTGCCCTGTGTGCAAGCGAGATGCAAGTGCTGGAACCTCAAAACCCCCTGCATCGGAG 480
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TCCACCCCTTTGCTTTCTTCTGTTATTCATCTGTCTGCTGAATCAACAGCTTTGTCTTCT 540
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TTTCGGTCAACGGTGGCAGTATCTCCCCCTAGGCCAATAAGACGTCATCCTTCATCACAG 600
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TCCACATCCCGCGCTTACTCCATTTCCAGTGCCCCCCGCAATTATAACCTTCAAAGATAT 660
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TACACTAACTCACCTTATATTAGTACGAGTAGAAGCAATGTAGATCTTGCAAATATGTCA 720
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TCACAATGGTCTCACACTCCGCACCAAGCATCCATGCATTCTCTAAGAAGTGGCCATTTG 780
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TCTCTACCGATCAACATCAGGTATACAATACCACATGTTTCTCGTTCTGACTATGGATCT 840
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 GCCAGCCTGGGTTTATCCCATGATTCCTGTTCTCACCATGGATCTCCGAGTTATTATCAT 900
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 AGCTCTTTGGGCCAGCAACGTTCTTACCTGATGCACCGCACCGAGTCAGGGCCAAGCCTG 960
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TCTACTATGGTGCTCCAGTCGCCACAATAGAGTCAGTAGCAGTACAATGGCGAATCAGGA 1020
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 GAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCT 1080
consensus_9750#1 ----------TGCTCCAGTC--GCCCA--CATAGAGTCAGTACCA-GTACAG----ATGG 41
*** * ** * * *** ***** * * ****** *
consensus_9750#0 TGATTCTGATGGAAGCTTGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATT 1140
consensus_9750#1 CGAATCCAGGAGAAGTCT----------ACATCGGATCAGTTGCTACCAAGAT-CTGATT 90
** ** **** * ************* *********** ******
consensus_9750#0 GATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGCAAGCCCCTGCTAGATTTGTTCCT 1200
consensus_9750#1 GATCTTACGAAGTTCACTGTTTCATGAGCATTTGTCAAGCACCCTGCTAGATTTGTTCCT 150
*********************************** * *******************
consensus_9750#0 GGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAA 1260
consensus_9750#1 GGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGCAGGTTCATGCAAA 210
************************************************************
consensus_9750#0 GTTAATTCATGGAACTATTTCGTGCCAGCCACCA-TTGTGATTCAACAAGGTTACTTACA 1319
consensus_9750#1 GTTCATTCATGGAACTATTTCGTGCCAGCCACCACTTGTGATTCA-CAAGGTTACTTACA 269
*** ****************************** ********** **************
consensus_9750#0 TTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGC 1379
consensus_9750#1 TTGTCTGTACGGAGGGGAAATTGGTGATCTTAAATCGAAGAAAGACTTGCTGAGTTTTGC 329
************************************************************
consensus_9750#0 -TGAAGAAGCAAATATCCATCA-GTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGA 1437
consensus_9750#1 CTGAAGAAGCCAATATCCATCACGTCTACAAGGAATGGTTTGACTTTGCGTATTGTTTGA 389
********* *********** *************************************
consensus_9750#0 GGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAG 1497
consensus_9750#1 GGCTTGTATTATAGGTGATGACTTTAGAGTTGGTGTAATGGTGTGTTTCTTTTACATTAG 449
************************************************************
consensus_9750#0 TTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTT 1557
consensus_9750#1 TTATTTTGTCATGCGTATAAATGTTACAGCTTAGCAATAATCTGTTAGTCGGTGAATGTT 509
************************************************************
consensus_9750#0 TTGTAGCTCTCTAATATTTATTCTTTTTTGCGAAACTTTCTAATACTTATTCTGATCTTG 1617
consensus_9750#1 TTGTAGCTCT-------------------------------------------------- 519
**********
consensus_9750#0 GATATTTGTGCAAGTGTGTTTTTGTTGCTTCGTTCTTCCTTTCAAGATCAACTGTACCTG 1677
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 AAAATTCTAGAGCATGTTTACGCTATGTTAAAAAAA 1713
consensus_9750#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||