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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[NGCCAGGTACCCGGTTCCGAAATTTCCCGGGTCGACCCCACGCTGTCCCCTGACACCAAAATTGAGAGTTAAGAGATACCATCTTACGCATGCAACCTCTGTCATGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCCAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCANATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATCTTTATACTGGAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCCTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCCAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAA]
[+] EMBL BQ907184 [NGCCAGGTACCCGGTTCCGAAATTTCCCGGGTCGACCCCACGCTGTCCCCTGACACCAAAATTGAGAGTTAAGAGATACCATCTTACGCATGCAACCTCTGTCATGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCCAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCANATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATCTTTATACTGGAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCCTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCCAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAA]
consensusID : consensus_9753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence
[AGGCCGAGACAAGGGGGAAGAAAAGAGGCTGCCAGCAAATGGGAGAGTAAGAGATAGCATCTTACGCATGCCAACCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTTAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACACGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCCCCAAGTGGTGATCTTTATACTGGAGG-AAAGACAGGGTTG-TTGCTCTGGGCAGTCACTCTTTCTGGAATT-TTGCTGGCTGGTGC-TCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTTTGAGTGAATAAAACTATGTAAGTAATGTTTTTATGTGTTCGTGCAATAATATAGAAGCTCGATAAGCAGAGTAAACATATGGGGTTCAAAAAAAAAAAAA]
[-] EMBL CA762808 [AGGCCGAGACAAGGGGGAAGAAAAGAGGCTGCCAGCAAATGGGAGAGTAAGAGATAGCATCTTACGCATGCCAACCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTTAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACACGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCCCCAAGTGGTGATCTTTATACTGGAGG AAAGACAGGGTTG TTGCTCTGGGCAGTCACTCTTTCTGGAATT TTGCTGGCTGGTGC TCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTTTGAGTGAATAAAACTATGTAAGTAATGTTTTTATGTGTTCGTGCAATAATATAGAAGCTCGATAAGCAGAGTAAACATATGGGGTTCAAAAAAAAAAAAA]
[+] EMBL CB630985 [ AGAGTAAGAGATAGCATCTTACGCATGGCAACCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATCTTTATACTGGAGG AAAGACAGGGTTG TTGCTCTGGGCAGTCACTCTTTCTGGAATT CTGCTGGCTGGTGC TCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAG ]
[+] EMBL BI810336 [ TGGAGGTAAAGACAGGGTTGTTTGCTCTGGCAAGTCACTCTTTCTGGAATTCTTGCTGGCTGGTGCATCTTCTTGTCTACCATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCCACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCC ]
consensusID : consensus_9753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGTTAGTACACGCTACAGAGTTTAGCACTGGAAAAACTGCATAGAGGTTAAGCTTCAAGTTAGTAGCTTAATTGCCCCTTGTTTCATGTATGCACAAGCACACCATTCTTTTCAGTGGCTCAAACTATTTCAGAAAAAAATCAGAGAACTAGCACTGATTCTAATGGATGACACTATCAACATAGTACTATTTTATATATGAACATATGTAATGTTAACATGTAGGACCTGGAGGAGGACCGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGTCAGGGCTGAGGTTGAAAGCAAAATTAGAGAAAAATCAACAATAGTAAAATCTGCTCATCACTATATTTCTTTTCCATTGTAATTAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGGTAAAACATTCATCTGAATAGAAGAACAGCAGGCATAACATTCAT]
[+] EMBL CF308328 [CATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGTTAGTACACGCTACAGAGTTTAGCACTGGAAAAACTGCATAGAGGTTAAGCTTCAAGTTAGTAGCTTAATTGCCCCTTGTTTCATGTATGCACAAGCACACCATTCTTTTCAGTGGCTCAAACTATTTCAGAAAAAAATCAGAGAACTAGCACTGATTCTAATGGATGACACTATCAACATAGTACTATTTTATATATGAACATATGTAATGTTAACATGTAGGACCTGGAGGAGGACCGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGTCAGGGCTGAGGTTGAAAGCAAAATTAGAGAAAAATCAACAATAGTAAAATCTGCTCATCACTATATTTCTTTTCCATTGTAATTAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGGTAAAACATTCATCTGAATAGAAGAACAGCAGGCATAACATTCAT]
consensusID : consensus_9753#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[CATAATGGATATTTGCTGTATTTATTGTAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATGTTTATACTGGAGGTAAGCACATATAACCATCCCAAAAGGCCAAACACTTTTTAGCGCTCACCGCTACTTAAAAAATATCAGACAAATCAATTTCCAAAGCACATATAATTTTCATCCCTTGCTTTATGCAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAAAAAACAAAAAAA]
[-] EMBL CF308327 [CATAATGGATATTTGCTGTATTTATTGTAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATGTTTATACTGGAGGTAAGCACATATAACCATCCCAAAAGGCCAAACACTTTTTAGCGCTCACCGCTACTTAAAAAATATCAGACAAATCAATTTCCAAAGCACATATAATTTTCATCCCTTGCTTTATGCAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAAAAAACAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9753#0 NGCCAGGTACCCGGTTCCGAAATTTCCCGGGTCGACCCCACGCTGTCCCCTGACACCAAA 60
consensus_9753#1 -------------AGGCCGAGA----CAAGGGGGAAGAAAAGAGG----CTGCCAGCAAA 39
consensus_9753#3 ------------------------------------------------------------
consensus_9753#2 ------------------------------------------------------------
consensus_9753#0 ATTGAGAGTTAAGAGATACCATCTTACGCATGC-AACCTCTGTCATG-CCTCTTGTGCTC 118
consensus_9753#1 TGGGAGAGT-AAGAGATAGCATCTTACGCATGCCAACCTCTGTCATGGCCTCTTGTGCTC 98
consensus_9753#3 ------------------------------------------------------------
consensus_9753#2 ------------------------------------------------------------
consensus_9753#0 TAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCAT 178
consensus_9753#1 TAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCAT 158
consensus_9753#3 ------------------------------------------------------------
consensus_9753#2 ------------CATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCAT 48
consensus_9753#0 CAAGGCCATCCTTGTTCAGAGTAATGGCCCAAAAAGCAAAGAAGATCCAGACTTCTCAGC 238
consensus_9753#1 CAAGGCCATCCTTGTTTAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGC 218
consensus_9753#3 -----------------------------CATAATGGATATTTGCTGTATTTATTGTAGC 31
consensus_9753#2 CAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGC 108
* ** * * * * * * * ***
consensus_9753#0 CTTTCGG-----ACCTGGAGGAGGACTGAAC-CTGAAAGACGGTGTTGACGCGTCCGGAA 292
consensus_9753#1 CTTTCGG-----ACCTGGAGGAGGACTGAAC-CTGAAAGACGGTGTTGACACGTCCGGAA 272
consensus_9753#3 CCAATAT-----ATAACCCAGAGGAATGGTCACCAAGTGGTGATGTTTATACTGGAGGTA 86
consensus_9753#2 CTTTCGGTTAGTACACGCTACAGAGTTTAGCACTGGAAAA-ACTGCATAGAGGTT---AA 164
* * ** * * * ** * *
consensus_9753#0 GGC-CANATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGG--AGCTAATGTT 349
consensus_9753#1 GGC-CAA-TCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGG--AGCTAATGTT 328
consensus_9753#3 AGCACATATAACCATCCCAAAAGGCCAAACACTTTTTAGCGCTCACCGCTACTTAAAAAA 146
consensus_9753#2 GCTTCAAGTTAGTAGCTTAATTGCCCCTTGTTTCAT--GTATGCACAA--GCACACCATT 220
** * * * * * * * * *
consensus_9753#0 GATGGATACAGCCCAATATATAACCCAGAGGAAT-GGTCACCAAGTGGTGATCTTTATAC 408
consensus_9753#1 GATGGATACAGCCCAATATATAACCCAGAGGAAT-GGTCCCCAAGTGGTGATCTTTATAC 387
consensus_9753#3 TATC-AGACAAATCAATTTCCAAAGCACAT--AT-AATTTTCATCCCTTG--CTTTATGC 200
consensus_9753#2 CTTTTCAGTGGCTCAAACTATTTCAGAAAAAAATCAGAGAACTAGCACTGATTCTAATGG 280
* *** * * * ** * ** * **
consensus_9753#0 TGGAGGA----AAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGG 464
consensus_9753#1 TGGAGGA----AAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTTTGCTGG 443
consensus_9753#3 ---AGGA----AAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGG 253
consensus_9753#2 ATGACACTATCAACATAGTACTATT-TTATATATGAACATATGTAATGTTAACATGTAGG 339
* ** * ** * ** * * ** * ** * ** **
consensus_9753#0 --CTGGTGCTCTTCCTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAG 522
consensus_9753#1 --CTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAG 501
consensus_9753#3 --CTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAG 311
consensus_9753#2 ACCTGGAGGAGGACCGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGT 399
**** * * * ** *** ** ** **** *
consensus_9753#0 AAAACCAACTTATTGTAGTGCCATGCCAGGTTTACATATTCTAGAATGGATCTGTGTACA 582
consensus_9753#1 AAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACA 561
consensus_9753#3 AAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACA 371
consensus_9753#2 CAGGGCTGAGGTTGAAAGCAAAATTAGAGAAAAATCAACAATAGTA-AAATCTGCTCATC 458
* * * ** ** ** * * *** * ***** *
consensus_9753#0 GCTATGTTCCTAGA--ATTAACTTCTGAGTGAATAAAACTAT--GTAAGTAATGTTCTTA 638
consensus_9753#1 GCTATGTTCCTAGA--ATTAACTTTTGAGTGAATAAAACTAT--GTAAGTAATGTTTTTA 617
consensus_9753#3 GCTATGTTCCTAGA--ATTAACTTCTGAGTGAATAAAACTAT--GTAAGTAATGTTCTTA 427
consensus_9753#2 ACTATATTTCTTTTCCATTGTAATTAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTAT 518
**** ** ** *** * * * ** *** ** * * *
consensus_9753#0 TGTGTTCGTGCCAATA-ATATAGA-AGCTCAATAAGCAGAGTAAAAAAAA---------- 686
consensus_9753#1 TGTGTTCGTGC-AATA-ATATAGA-AGCTCGATAAGCAGAGTAAACATATGGGGTTCAAA 674
consensus_9753#3 TGTGTTCGTGC-AATA-ATATAGA-AGCTCAATAAGCAGAGTAAAAAAAAAAAACAAAAA 484
consensus_9753#2 GGAGCTAATGTTGATGGATACAGGTAAAACATTCATCTGAATAGAAGAACAGCAGGCATA 578
* * * ** ** *** ** * * * * * ** ** * *
consensus_9753#0 ----------
consensus_9753#1 AAAAAAAAAA 684
consensus_9753#3 AA-------- 486
consensus_9753#2 ACATTCAT-- 586
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||