cluster # 9756

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Oryza sativa
cluster # 9756 cluster # 9756 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9756#0 length = 845 sequences # 4

consensus_9756#1 length = 556 sequences # 2

consensusID : consensus_9756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 845
fasta sequence

                              [GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCT-GCT-TGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCT-TTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTT-CCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACA-CA-AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATC-CAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAAAATTTCTGGAGACTCATCCACCCTTAACAAAAAA]

[+] EMBL BI813523             [GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCT GCT TGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCT TTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTT CCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC ACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATC CAAAAAaaaaa                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI811060             [                                          AAAGAGCTCTCCCTTGTAGCACCAA CTGGCTGTGAAGTCGGTGAAGGACCTTCCAGCCCTATCTGGTTTCCTGTTCGGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTA GCA  TTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGA CAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACACCACAGGTTGTTAATCTTGAAGAATTTGGGCTGT CAGTCACTTG                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM419487             [                                                                                                                                                                                                                                                                                                                             CGTGGCCTAGAGAGTGAGATGTGAAGACCCNACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATCNCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAAAA                                ]
[+] EMBL BI813328             [                                                                                                                                                                                                                                                                                                                                ctgCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTT GGCTGT CAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAA  CAAAATATC CAAAAAGGGAAAATGTCCAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAACATTTCTGGAGACTCATCCACCCTTAACAAAAAA]




>consensus_9756#0
GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTA
GCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTT
TGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAA
GTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTG
GATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCAC
CTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGA
TTGGTAGAGACACAAGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATA
TGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAA
AAAAAATAAATAAAACCAAAATATCCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCT
TTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCT
TTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAA
ATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGT
GTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAAT
TTCATTTTCAGTGATGGAATAGTTGTGGAAAAATTTCTGGAGACTCATCCACCCTTAACA
AAAAA

consensusID : consensus_9756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence

                              [TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCTTTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC-AATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC-ACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAAAAA]

[+] EMBL BQ907314             [TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCTTTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC AATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC ACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAA   ]
[+] EMBL BI812061             [                                                                                           AGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCCGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCAAATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACAC AGGTAAGGGC TTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAAAAA]




>consensus_9756#1
TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCT
TTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGAC
ACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGA
AGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGG
TTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCAATTTGAGCTGTGTT
GAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCG
TGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAG
TGAGATGTGAAGACCCACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTG
GATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATAT
TTTAATTTCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9756#0      ------------------------------------------------------------
consensus_9756#1      TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCT 60
                                                                                  

consensus_9756#0      -----------------------------------GAGGGCTCTCCCACAACAGCTTGGA 25
consensus_9756#1      TTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACA-CAGCTTGGA 119
                                                         *************** *********

consensus_9756#0      CACGAG-CCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTG 84
consensus_9756#1      CACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTG 179
                      ****** *****************************************************

consensus_9756#0      AAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGG 144
consensus_9756#1      AAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGG 239
                      ************************************************************

consensus_9756#0      GTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTG 204
consensus_9756#1      GTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC-AATTTGAGCTGTG 298
                      ********************************************** *************

consensus_9756#0      TTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCA 264
consensus_9756#1      TTGAGGAGTTAGGCA-GTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCA 357
                      *************** ********************************************

consensus_9756#0      CCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGA 324
consensus_9756#1      CCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGA 417
                      ************************************************************

consensus_9756#0      GAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACACAAGGTTGTTAA 384
consensus_9756#1      GAGTGAGATGTGAAGACCCA-CTAAAAGACAGTAGATTGGTAGAGACACAAGGT------ 470
                      ******************** *********************************      

consensus_9756#0      TCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTAT 444
consensus_9756#1      -----AAGGGCATTGGATTTGTATTTGT---TGATACATATTTTTATTCTATC--GTTAT 520
                           ***    * ** * ** * *      * ***  ******* ** ** *  *****

consensus_9756#0      TGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATAT 504
consensus_9756#1      C------TAAAATAGTGGAAACATATTTTAATTTCAAAAAAA------------------ 556
                             * ***** *  *** ** ** *  *** *******                  

consensus_9756#0      CCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTC 564
consensus_9756#1      ------------------------------------------------------------
                                                                                  

consensus_9756#0      ATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGT 624
consensus_9756#1      ------------------------------------------------------------
                                                                                  

consensus_9756#0      AGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCG 684
consensus_9756#1      ------------------------------------------------------------
                                                                                  

consensus_9756#0      GAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAG 744
consensus_9756#1      ------------------------------------------------------------
                                                                                  

consensus_9756#0      ATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTT 804
consensus_9756#1      ------------------------------------------------------------
                                                                                  

consensus_9756#0      GTGGAAAAATTTCTGGAGACTCATCCACCCTTAACAAAAAA 845
consensus_9756#1      -----------------------------------------