cluster # 9761

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Oryza sativa
cluster # 9761 cluster # 9761 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9761#0 length = 747 sequences # 3

consensus_9761#1 length = 712 sequences # 3

consensusID : consensus_9761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 747
fasta sequence

                              [TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTTAGCCACTCATAGATGCGCGTGTTCACACGCAAAGATA-TACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTCCTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCTGCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATGATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTCATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGCTGAACCTACCAAATTGGAGGTAAAGAGGCATTTGGATAGAATCCAAACTGTATAGTTCAGAACTTCAAAATTTCAAATGCATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCCTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGA]

[+] EMBL BI811950             [TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTTAGCCACTCATAGATGCGCGTGTTCACACGCAAAGATA TACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA998846             [                                                                                    ACACGCAAAGATAGTACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTCCTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCTGCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATGATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTCATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGCTGAACCTACCAAATTGGAGGTAAAGAGGCATTTGGATAGAATCCAAACTGTATAGTTCAGAACTTCAAAATTTCAAATGCATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCCTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGA]
[+] EMBL CA998097             [                                                                                    ACACGCAAAGATA TACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTCCTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCTGCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATGATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTCATAGTTTGTAAACTAAATAGCAACGCTTTT                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_9761#0
TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTT
AGCCACTCATAGATGCGCGTGTTCACACGCAAAGATATACTCACTGTGTGTTATGTAAGA
GACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTC
CTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCT
GCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATG
ATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTC
ATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGCTGAACCTACCAAATTGGAGG
TAAAGAGGCATTTGGATAGAATCCAAACTGTATAGTTCAGAACTTCAAAATTTCAAATGC
ATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATG
CTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAA
AGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCC
TGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTT
AGCTATCAACTGATTTATTTTGGACGA

consensusID : consensus_9761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 712
fasta sequence

                              [GTTCATCATGTAACACACCTTTTTCACTGCATCATCCATTGGTGTGTCAATAGCACAGATAAAGCAGCTAGCAGAC-GAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACTTCAGATTGGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG]

[-] EMBL CB627779             [GTTCATCATGTAACACACCTTTTTCACTGCATCATCCATTGGTGTGTCAATAGCACAGATAAAGCAGCTAGCAGACAGATCCAAGGAGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACTTCAGATTGGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG]
[-] EMBL CA760970             [                                                                        gGAC GAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAAAAAaaaaaaa                                                       ]
[+] EMBL CA765147             [                                                                         GAC GAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTC TCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTAACAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTA                                                      ]




>consensus_9761#1
GTTCATCATGTAACACACCTTTTTCACTGCATCATCCATTGGTGTGTCAATAGCACAGAT
AAAGCAGCTAGCAGACGAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCT
GAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATG
CTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAA
AGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCT
TGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTT
AGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGA
ATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGC
CTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACT
GACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAA
AGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACT
TCAGATTGGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9761#0      TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTT 60
consensus_9761#1      ----------GTTCATCATGTAACACACC--------TTTTTCACTGCATCATCCA--TT 40
                                 * ***** ***   ****        ****  ** * ** ** **  **

consensus_9761#0      AGCCACTCATAGATGCGCGTGTTCACACGCAAAGATATACTCACTGTGTGTTATGTAAGA 120
consensus_9761#1      GGTGTGTCAATAGCACAGATAAAGCAGCTAGCAGACGAG---ACAAGGGGATATGCCAGA 97
                       *    ***      *   *       *    ***       **   * * ****  ***

consensus_9761#0      GACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTC 180
consensus_9761#1      TGGCTGGAAAAGCAC-TATGATCTGAAGTTTGTGA-AGTCATCCATCAGAT-TGATAAAT 154
                         * * ***   *  *    * **   * *** * ** **    *  ***   **    

consensus_9761#0      CTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCT 240
consensus_9761#1      CTTG--GATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTC- 211
                      ***    *  **      ** ** * *   **  * ** * **   **      ** ** 

consensus_9761#0      GCAACACTTACT-TGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGAT 299
consensus_9761#1      ATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAA 271
                        * ** *     *** **    *   *  * *        *    * ** *   *  * 

consensus_9761#0      GATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCT 359
consensus_9761#1      GATACTTTGGTAAGACAGT-----AAACTCTTCTTGAT-CGTTCTAACTGTC--CAAGCT 323
                      ***  **     * * ***     *   ** ** ** *  ** ** *  *     * ***

consensus_9761#0      CATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGC-TGAACCTACCAAATTGGA 418
consensus_9761#1      CAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGG 383
                      ** ** *** **  *  *     * *      *  ***    * ***  *   * ** * 

consensus_9761#0      GGTAAAGAGGCATTTGGATAGAATCCAA-ACTGTATAGTTCAGAACTTCAAA-ATTTCAA 476
consensus_9761#1      ACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAG 443
                         *     *   *    * ** *     *  * * * *  * ***     * * *  * 

consensus_9761#0      ATGCATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTG 536
consensus_9761#1      AAGCAAGAATCATATACAATTTAATTTCCTTG--GATGCCTGCAGGTAGGA----TGTGG 497
                      * *** ** *   *     * * * *   ***   *  * ** * **  **    *** *

consensus_9761#0      GATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTA 596
consensus_9761#1      AATTATTGA--GCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAG-ACAGCCA 554
                       **  ****  * *   *  * ** ** *   * * * *  *   ** * *  * *** *

consensus_9761#0      CGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTC 656
consensus_9761#1      TGCCTTCTACTGACTTGACAA--CAATATATG-----TCCTTTTCCACACAAAAGATGTG 607
                       *     ******** ** **  * *******     * ****   *    *   *  * 

consensus_9761#0      TTCCTGATCGTTCTAACTGTCCAAGCTCAGAGATTG-CAACATGGAAG--AACATGTAAC 713
consensus_9761#1      CTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACTTCAGATT 667
                       ** *  **   ***  * *   ** * * *   ** ***** *      *      *  

consensus_9761#0      AGTTTTTAGCTATCAACT--------GATTTATTTTGGACGA--- 747
consensus_9761#1      GGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG 712
                       * *  *** **  ***         ** *  *  ****  *