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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1251 fasta sequence
[TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGACCGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACATGTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTACAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCCTGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATACCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAAGGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAAACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCCCTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATACCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTTTGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCA-GAAGAGG-CGC-TTCACATAGGCGAC-AGCATGCGCAAGGACTACACCCCTGCACGGAGCATC-GGAATGCACGCGCTGCTTCTGGACC-GATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGC-AACTGTGCTCCCTGACCTGGTAGCTGCTCAGGAGTGG-CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCA-TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAA---AAGCAGGGCAATTTCAGTTCTGTTTGTCATTCTATTCCCAAAAAAAAAA]
[+] EMBL AK101330 [TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGACCGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACATGTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTACAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCCTGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATACCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAAGGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAAACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCCCTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATACCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTTTGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCA GAAGAGG CGC TTCACATAGGCGAC AGCATGCGCAAGGACTACACCCCTGCACGGAGCATC GGAATGCACGCGCTGCTTCTGGACC GATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGC AACTGTGCTCCCTGACCTGGTAGCTGCTCAGGAGTGG CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCA TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAA AAGCAGGGCAATTTCAGT ]
[+] EMBL AK060153 [TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGACCGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACATGTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTACAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCCTGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATACCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAAGGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAAACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCCCTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATACCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTTTGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCA GAAGAGG CGC TTCACATAGGCGAC AGCATGCGCAAGGACTACACCCCTGCACGGAGCATC GGAATGCACGCGCTGCTTCTGGACC GATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGC AACTGTGCTCCCTGACCTGGTAGCTGCTCAGGAGTGG CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCA TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAA AAGCA ]
[+] EMBL BI813368 [ CGCGCCATGAAGAGGCCGCTTTCACATAGCCGACAAGCATGCGCAAGG TACACCCCTGCACGGAGCATCGGGAAT CACGCGCTGCTTCTGGACCAGATTCAAGACC CCGAT CTGAGAGCTGGAGGAATTCTGGAGCAAACTGTGCTCCCTGACCTGGTA CTGCTCAGGAGTGGTCTCACCAAGAATCTCAAGGATGACCCAGTAGCAGCTGAAC AAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGA GCAAAAGAAATGTGCCA TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAA CAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCAaaaaa ]
[+] EMBL BI812105 [ CTGCTTCTGGACC GATTCAAG CCGCCGAT CTGAGAGCTGGAGGAAGTCTGGAGC AACTGTGCTCCCTGACCTGGTA CTGCTCAGGAGTGG CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTG ACCAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCACTTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGC AATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAAAAGAAGCAGGGC ATTTCAGTTCTGTTTGTCATTCTATTCCCAAAAAAAAAA]
consensusID : consensus_9762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[GGCTCCGAGTGGGACTTTGGGGTGTACTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCTTGCGCAAGGACTACACCCCTGCACGGAACATTTTAATGCACGCACCGCTTCTGGACCAATACAACACCGCCTATGCTGCGATCTCCAGGAACCCTATATCATT]
[+] EMBL CA758089 [GGCTCCGAGTGGGACTTTGGGGTGTACTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCTTGCGCAAGGACTACACCCCTGCACGGAACATTTTAATGCACGCACCGCTTCTGGACCAATACAACACCGCCTATGCTGCGATCTCCAGGAACCCTATATCATT]
consensusID : consensus_9762#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence
[CCCCCAAAAAGGGGGGTTTTTCCCCCGGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGCAAAGAAATGTCCATTGATGTATTTGTATTGTACTGATGGAATAGTTTATTGATGTTCTTGCTGCTGGATTATG]
[+] EMBL BM037915 [CCCCCAAAAAGGGGGGTTTTTCCCCCGGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGCAAAGAAATGTCCATTGATGTATTTGTATTGTACTGATGGAATAGTTTATTGATGTTCTTGCTGCTGGATTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9762#0 TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGAC 60
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 CGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACAT 120
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 GTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTA 180
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 CAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCC 240
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 TGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATA 300
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 CCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAA 360
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 GGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAA 420
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 ACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCC 480
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 CTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATA 540
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 CCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTT 600
consensus_9762#1 -------------------------------------------GGCTCCGAGTGGGACTT 17
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 TGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGC 660
consensus_9762#1 TGGGGTGTACTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGC 77
consensus_9762#2 --------------------CCCCCAAAAAGGGGGGTTTTTCCCCCGGTCACTGAGCTGA 40
** * * * ** * **
consensus_9762#0 ACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCATGCG 720
consensus_9762#1 ACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCTTGCG 137
consensus_9762#2 ATTCCCTCTTGTTTCCTAG-TTATGAAACGAGGGAG----CAAAGAAATGTCCATTGATG 95
* * * * * ** * * * ** * ** * * * * *
consensus_9762#0 CAAGGACTACACCCCTGCACGGAGCATCGGAATGCACGCGCTGCTTCTGGACCGATTCAA 780
consensus_9762#1 CAAGGACTACACCCCTGCACGGAACATTTTAATGCACGCACCGCTTCTGGACCAATACAA 197
consensus_9762#2 TATTTG-TATTGTACTG-ATGGAATAGTTTATTGATGTTCTTGCTGCTGGATTATG---- 149
* ** *** * *** * * ** *** *****
consensus_9762#0 GACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGCAACTGTGCTCCCTGACCTGGTAGC 840
consensus_9762#1 CACCGCCTATGCTGCGATCTCCAGGAACCCTATATCATT--------------------- 236
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 TGCTCAGGAGTGGCTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGT 900
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 CTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTT 960
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 ATGAAACGAGGGAGGCAAAAGAAATGTGCCATTGATGTATTTGTATTGTACTGATGGAAT 1020
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 AGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGA 1080
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 TGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCAT 1140
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 GAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAAT 1200
consensus_9762#1 ------------------------------------------------------------
consensus_9762#2 ------------------------------------------------------------
consensus_9762#0 AAAAGCAGGGCAATTTCAGTTCTGTTTGTCATTCTATTCCCAAAAAAAAAA 1251
consensus_9762#1 ---------------------------------------------------
consensus_9762#2 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||