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Oryza sativa
cluster # 9777 cluster # 9777       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9777#0 length = 2503 sequences # 3  
consensus_9777#1 length = 579 sequences # 2  
consensus_9777#2 length = 552 sequences # 1  

consensusID : consensus_9777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2503
fasta sequence
                              [AATTCTCGCGCCGATTCCGAGGGGCAACCGCCGCCTCGCCCCCGCGCCCCCTGCCGCCGGCGGCTTCCTCCGCGCCCTCTTCCCCTCACGGCGCTCCCGCCCTCCGCCAGAGAAGGACGAGCTCCTCCGCCTCATCGCCGACCAATGCCGCGGCCTCGACACCCAGTCCGACCCCTCCCGCCTCGCCGACATCGTCTCCTGCATCGACGCCCTCGCCGCCGCTGCTCCCGGATCCGATACCGTTTCCGATGCCGACAAGCTTTCCGGTACGTGGCGGCTCCTCTGGACCACCGAGCATGAGCAGCTCTTCATCGTGCGCAACGCCCCCTTCTTCCGCACCGCCGCCGGTGATGTGTTCCAGGTAATCGACGTCCCCGGTGGCGCCCTCAACAACGTGATCACCTTCCCGCCCTCTGGCGCGTTCGTCGTGAACGGCTCCATCGAGATCCAGCCGCCCCAGCGAGTCAATTTTAGGTTTACACGCGCTATGTTGAGAGGGAGCAATTGGGAGGTCCCGTTTCCGCCCTTTGGGAAAGGATGGTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGGGGACTATTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAAAGTTGATTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGTCAGAGCCTTGTGCTTTCTCAGCAAAGTGTTAACCATCGTGCTATGACATTTCTTTTCCTAGACAATACTATGTTCTCCCGGAATTAGATGGTAAGTTTGATTAGTAATGCATGTGCAGCAAGGTTCTTCTTCCAAGGAATTGTCTAGGTTAAATAATACCTAGGTATCCCCTATGTGAGAGAACACAAACTTGCCAAGTATTTGATGTGCTTTTGGACATATGAAAAAGATGCTGCCCATTACGGTGAACTACGTTAGCGAACTTGACAGCATATTGTTATGGCCCACGATATCAAGAGCCATGATGGAATTGTTGACTGTTTCAGTACCTTTTGTTAGTATTGTTTTGCCTGTTGCTTCCAGCTTTAAGTAGTAGTTTTTCACATTGAAGCAAGTTCTCAGCAAATCAGGTCAATGAATGCCATCATCTGATTAAGATAGTAAACTATGTATGGTCTTGCTTTATCTGTATCAGGGTTCCTTTTCCTTTTATACTCATGAGGAGTCAATGAGATCAAATCCAACTTTGCTTTGGGAAAAGTAGCATTGTAGTGTCGCAAGCTTAATGATATGAAACATTAGATTCAGTTTCTGTAACCACTTACCCATGATTTCTAATTCTAGGGGTTTCAGATACAGTGTTATGTTTCATTCCATCTATCAATTGACCACTGAAGATCAGATCAACTTTTTGCAGGGATCGGGCTCTATCCTTCTACTGCCCCCTTGGAATGCTGGCAGGATTTGTAGTGCAATGAGAAGAGAATTCAATTTGCCATGTCTGAATTTTCCTGGTTATTTTTGTTTGCTCGTTTCTTTATCTAGGAAAAATTCTGCTCAATACCTGGTTTAATTTTTGCTGCATCGTCAATGCTCCCTGTCATTTAAGAAAAGTAAGTGAAAAGGTATCTATGTGATAGATTGATTGAACATCACTACTTCTCCATGATATTCCAGGCCTGAACAGAAGCACTGAAGCAAAATACTTTTGAAATGCTTTCGTTGGTCCTACTGTTGAACTGAATAGCAAGTTCTCCTTTCAACAGCTTGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTACTAGACTACTGCAGGTTCTAGTCGCAGTCGAACAACATATGGTGAGGCTTTAGGAGGACAGGTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTG-TA-CGCTAC-GTGTGAACTCATCAGCTCATCACGAACCAGCATAGAATTATTTTTCTTAGTTTGCTTTTGTTTGTTTGGATACCATTTCCTTCACCTTGAGATATTTGGTTAAGGTGGATTGAACTTAGTAATGAAGCAATTCTTTTGTAATAGCAGGCCCT-CCCTGACCAAGTACTGGAGCCACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCA-CGAGATAAGTACATTGTACTGCTTCCTCCATTTCAAAATATAGCTATTTTTAGTACAGTACTTTGTTCTAAAATAAAGCTATTTCTTCATCTATATTCCCTAACTCATCACAACCA-TTCTTTTGCAAAAAAA]

[+] EMBL AK068663             [AATTCTCGCGCCGATTCCGAGGGGCAACCGCCGCCTCGCCCCCGCGCCCCCTGCCGCCGGCGGCTTCCTCCGCGCCCTCTTCCCCTCACGGCGCTCCCGCCCTCCGCCAGAGAAGGACGAGCTCCTCCGCCTCATCGCCGACCAATGCCGCGGCCTCGACACCCAGTCCGACCCCTCCCGCCTCGCCGACATCGTCTCCTGCATCGACGCCCTCGCCGCCGCTGCTCCCGGATCCGATACCGTTTCCGATGCCGACAAGCTTTCCGGTACGTGGCGGCTCCTCTGGACCACCGAGCATGAGCAGCTCTTCATCGTGCGCAACGCCCCCTTCTTCCGCACCGCCGCCGGTGATGTGTTCCAGGTAATCGACGTCCCCGGTGGCGCCCTCAACAACGTGATCACCTTCCCGCCCTCTGGCGCGTTCGTCGTGAACGGCTCCATCGAGATCCAGCCGCCCCAGCGAGTCAATTTTAGGTTTACACGCGCTATGTTGAGAGGGAGCAATTGGGAGGTCCCGTTTCCGCCCTTTGGGAAAGGATGGTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGGGGACTATTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAAAGTTGATTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGTCAGAGCCTTGTGCTTTCTCAGCAAAGTGTTAACCATCGTGCTATGACATTTCTTTTCCTAGACAATACTATGTTCTCCCGGAATTAGATGGTAAGTTTGATTAGTAATGCATGTGCAGCAAGGTTCTTCTTCCAAGGAATTGTCTAGGTTAAATAATACCTAGGTATCCCCTATGTGAGAGAACACAAACTTGCCAAGTATTTGATGTGCTTTTGGACATATGAAAAAGATGCTGCCCATTACGGTGAACTACGTTAGCGAACTTGACAGCATATTGTTATGGCCCACGATATCAAGAGCCATGATGGAATTGTTGACTGTTTCAGTACCTTTTGTTAGTATTGTTTTGCCTGTTGCTTCCAGCTTTAAGTAGTAGTTTTTCACATTGAAGCAAGTTCTCAGCAAATCAGGTCAATGAATGCCATCATCTGATTAAGATAGTAAACTATGTATGGTCTTGCTTTATCTGTATCAGGGTTCCTTTTCCTTTTATACTCATGAGGAGTCAATGAGATCAAATCCAACTTTGCTTTGGGAAAAGTAGCATTGTAGTGTCGCAAGCTTAATGATATGAAACATTAGATTCAGTTTCTGTAACCACTTACCCATGATTTCTAATTCTAGGGGTTTCAGATACAGTGTTATGTTTCATTCCATCTATCAATTGACCACTGAAGATCAGATCAACTTTTTGCAGGGATCGGGCTCTATCCTTCTACTGCCCCCTTGGAATGCTGGCAGGATTTGTAGTGCAATGAGAAGAGAATTCAATTTGCCATGTCTGAATTTTCCTGGTTATTTTTGTTTGCTCGTTTCTTTATCTAGGAAAAATTCTGCTCAATACCTGGTTTAATTTTTGCTGCATCGTCAATGCTCCCTGTCATTTAAGAAAAGTAAGTGAAAAGGTATCTATGTGATAGATTGATTGAACATCACTACTTCTCCATGATATTCCAGGCCTGAACAGAAGCACTGAAGCAAAATACTTTTGAAATGCTTTCGTTGGTCCTACTGTTGAACTGAATAGCAAGTTCTCCTTTCAACAGCTTGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTACTAGACTACTGCAGGTTCTAGTCGCAGTCGAACAACATATGGTGAGGCTTTAGGAGGACAGGTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTG TA CGCTAC GTGTGAACTCATCAGCTCATCACGAACCAGCATAGAATTATTTTTCTTAGTTTGCTTTTGTTTGTTTGGATACCATTTCCTTCACCTTGAGATATTTGGTTAAGGTGGATTGAACTTAGTAATGAAGCAATTCTTTTGTAATAGCAGGCCCT CCCTGACCAAGTACTGGAGCAACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCT CCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCA CGAGATAAGTACATTGTACTGCTGACTCCGTTTCAAAATATAGCTATTTTTAGCATGATACTTTGTTCTAAAATAAAGCTAT                                                   ]
[+] EMBL BM419321             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTGTGATGTTGGNCAGTTTGTGTTACCGCTACTGTGTGAACTCATCAGCTCATCACGAACCAGCATAGAATTATTTTTCTTAGTTTGCTTTTGTTTGTTTGGATACCATTTCCTTCACCTTGAGATATTTGGTTAAGGTGGATTGAACTTAGTAATGAAGCAATTCTTTTGTAATAGCAGGCCCT CCCTGACCAAGTACTGGAGCCACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACACCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCA CGAGATAAGTACATTGTACTGCTTCCTCCATTTCAAAATATAGCTATTTTTAGTACAGTACTTTGTTCTAAAATAAAGCTATTTCTTCATCTATATTCCCTAACTCATCACAACCA TTCTTTTGCAAAAAAA]
[+] EMBL BM418977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGTAATAGCAGGCCCTCCCCTGACCAAGTACTGGAGCCACTTCAAAGGATAGAA GCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACCGAGATAAGTACATTGTACTGCTTCCTCCATTTC AAATATAGCTATTTTTAGTACAGTACTTTGTTCTAAAATAAAGCTATTTCTTCATCTATATT CTTAATCCATCAC ACCACTTCTTTTGCAAAAAAA]


>consensus_9777#0 AATTCTCGCGCCGATTCCGAGGGGCAACCGCCGCCTCGCCCCCGCGCCCCCTGCCGCCGG CGGCTTCCTCCGCGCCCTCTTCCCCTCACGGCGCTCCCGCCCTCCGCCAGAGAAGGACGA GCTCCTCCGCCTCATCGCCGACCAATGCCGCGGCCTCGACACCCAGTCCGACCCCTCCCG CCTCGCCGACATCGTCTCCTGCATCGACGCCCTCGCCGCCGCTGCTCCCGGATCCGATAC CGTTTCCGATGCCGACAAGCTTTCCGGTACGTGGCGGCTCCTCTGGACCACCGAGCATGA GCAGCTCTTCATCGTGCGCAACGCCCCCTTCTTCCGCACCGCCGCCGGTGATGTGTTCCA GGTAATCGACGTCCCCGGTGGCGCCCTCAACAACGTGATCACCTTCCCGCCCTCTGGCGC GTTCGTCGTGAACGGCTCCATCGAGATCCAGCCGCCCCAGCGAGTCAATTTTAGGTTTAC ACGCGCTATGTTGAGAGGGAGCAATTGGGAGGTCCCGTTTCCGCCCTTTGGGAAAGGATG GTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGGGGACTA TTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAAAGTTGA TTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGTCAGAGC CTTGTGCTTTCTCAGCAAAGTGTTAACCATCGTGCTATGACATTTCTTTTCCTAGACAAT ACTATGTTCTCCCGGAATTAGATGGTAAGTTTGATTAGTAATGCATGTGCAGCAAGGTTC TTCTTCCAAGGAATTGTCTAGGTTAAATAATACCTAGGTATCCCCTATGTGAGAGAACAC AAACTTGCCAAGTATTTGATGTGCTTTTGGACATATGAAAAAGATGCTGCCCATTACGGT GAACTACGTTAGCGAACTTGACAGCATATTGTTATGGCCCACGATATCAAGAGCCATGAT GGAATTGTTGACTGTTTCAGTACCTTTTGTTAGTATTGTTTTGCCTGTTGCTTCCAGCTT TAAGTAGTAGTTTTTCACATTGAAGCAAGTTCTCAGCAAATCAGGTCAATGAATGCCATC ATCTGATTAAGATAGTAAACTATGTATGGTCTTGCTTTATCTGTATCAGGGTTCCTTTTC CTTTTATACTCATGAGGAGTCAATGAGATCAAATCCAACTTTGCTTTGGGAAAAGTAGCA TTGTAGTGTCGCAAGCTTAATGATATGAAACATTAGATTCAGTTTCTGTAACCACTTACC CATGATTTCTAATTCTAGGGGTTTCAGATACAGTGTTATGTTTCATTCCATCTATCAATT GACCACTGAAGATCAGATCAACTTTTTGCAGGGATCGGGCTCTATCCTTCTACTGCCCCC TTGGAATGCTGGCAGGATTTGTAGTGCAATGAGAAGAGAATTCAATTTGCCATGTCTGAA TTTTCCTGGTTATTTTTGTTTGCTCGTTTCTTTATCTAGGAAAAATTCTGCTCAATACCT GGTTTAATTTTTGCTGCATCGTCAATGCTCCCTGTCATTTAAGAAAAGTAAGTGAAAAGG TATCTATGTGATAGATTGATTGAACATCACTACTTCTCCATGATATTCCAGGCCTGAACA GAAGCACTGAAGCAAAATACTTTTGAAATGCTTTCGTTGGTCCTACTGTTGAACTGAATA GCAAGTTCTCCTTTCAACAGCTTGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTAC TAGACTACTGCAGGTTCTAGTCGCAGTCGAACAACATATGGTGAGGCTTTAGGAGGACAG GTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTGTACGCTA CGTGTGAACTCATCAGCTCATCACGAACCAGCATAGAATTATTTTTCTTAGTTTGCTTTT GTTTGTTTGGATACCATTTCCTTCACCTTGAGATATTTGGTTAAGGTGGATTGAACTTAG TAATGAAGCAATTCTTTTGTAATAGCAGGCCCTCCCTGACCAAGTACTGGAGCCACTTCA AAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGT GGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTT AAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCCAAGAC ACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACG ACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCTTCCTCC ATTTCAAAATATAGCTATTTTTAGTACAGTACTTTGTTCTAAAATAAAGCTATTTCTTCA TCTATATTCCCTAACTCATCACAACCATTCTTTTGCAAAAAAA



consensusID : consensus_9777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence
                              [TGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTACTAGACTACTGCAGGTTCTAGTCGCAGTCGAACAACATATGGTGAGGCTTTAGGAGGACAGGTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTGCCCTCCCTGACCAAGTACTGGAGCCACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCT-CCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCTGACTCCGTTTCAAAATATAGCTATTTTTAGCATAATACTTTGTTCTAAAATAAAGCTATTT-TTCATCTACGTTCTCAATCAATCACAACCATCTTTTTGAAAAA]

[-] EMBL CB638784             [TGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTACTAGACTACTGCAGGTTCTAGTCGCAGTCGAACAACATATGGTGAGGCTTTAGGAGGACAGGTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTGCCCTCCCTGACCAAGTACTGGAGCCACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCT CCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCTGACTCCGTTTCAAAATATAGCTATTTTTAGCATAATACTTTGTTCTAAAATAAAGCTATTT TTCATCTACGTTCTCAATCAATCACAACCATCT          ]
[+] EMBL BI813209             [                                                                                                            tGCCCT GGCCAGACTACATTGTGTGAT TT GGCAGTTTGTGCCCTCCCTGACCAAGTACTGGAGCCACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCCGGATGGTA CCAGCAGTCCAGCACCAAGAGCTCCCAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCTTCCTCCATTTCAAAATATAGCTATTTTTAGTACAGTACTTTGTTCTAAAATAAAGCTATTTCTTCATCTATATTCTTAATCAATCACAACCATTCTTTTGAAAAA]


>consensus_9777#1 TGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTACTAGACTACTGCAGGTTCTAGTC GCAGTCGAACAACATATGGTGAGGCTTTAGGAGGACAGGTTGGACCATGGCCCTGGGCCA GACTACATTGTGTGATGTTGGGCAGTTTGTGCCCTCCCTGACCAAGTACTGGAGCCACTT CAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGT GTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTC TTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCAAGA CACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCCTCTGCGGCGAC GACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCTGACTC CGTTTCAAAATATAGCTATTTTTAGCATAATACTTTGTTCTAAAATAAAGCTATTTTTCA TCTACGTTCTCAATCAATCACAACCATCTTTTTGAAAAA



consensusID : consensus_9777#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [TCCTAAGTGTCAAATATGTATGACCAGAATAGTTTTTGGAACTGTGCTGCATAATCAACAATTTATAAGTCTAACAAACTTTTCATTTTTGTTACTAGATGACCAAATCATCATCTACAAGGGCTTTCCTTTCCCACCTCCATTTTTAGGGATGGTGTATATGTTTTCTTCACCTGATCAGTAGAGAGTGAATGTAAATAAAGCTGGACTGGAAACACATTTTTACCAGTTAGGTCTTTGACATTTGTTCAGTTTATCAGTTCTGTTTCGTTTTATCAGTTTCTGGTTTGACACCATCTATTTGGAAATTTGGCTTGTATGTGTTAGGTCTTTTGACATTTACATAATATATGCCTCTACTTTCAAGTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGGGGACTATTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAAAGTTGATTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGTCAGAGCCTTGTG]

[+] EMBL CB638783             [TCCTAAGTGTCAAATATGTATGACCAGAATAGTTTTTGGAACTGTGCTGCATAATCAACAATTTATAAGTCTAACAAACTTTTCATTTTTGTTACTAGATGACCAAATCATCATCTACAAGGGCTTTCCTTTCCCACCTCCATTTTTAGGGATGGTGTATATGTTTTCTTCACCTGATCAGTAGAGAGTGAATGTAAATAAAGCTGGACTGGAAACACATTTTTACCAGTTAGGTCTTTGACATTTGTTCAGTTTATCAGTTCTGTTTCGTTTTATCAGTTTCTGGTTTGACACCATCTATTTGGAAATTTGGCTTGTATGTGTTAGGTCTTTTGACATTTACATAATATATGCCTCTACTTTCAAGTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGGGGACTATTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAAAGTTGATTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGTCAGAGCCTTGTG]


>consensus_9777#2 TCCTAAGTGTCAAATATGTATGACCAGAATAGTTTTTGGAACTGTGCTGCATAATCAACA ATTTATAAGTCTAACAAACTTTTCATTTTTGTTACTAGATGACCAAATCATCATCTACAA GGGCTTTCCTTTCCCACCTCCATTTTTAGGGATGGTGTATATGTTTTCTTCACCTGATCA GTAGAGAGTGAATGTAAATAAAGCTGGACTGGAAACACATTTTTACCAGTTAGGTCTTTG ACATTTGTTCAGTTTATCAGTTCTGTTTCGTTTTATCAGTTTCTGGTTTGACACCATCTA TTTGGAAATTTGGCTTGTATGTGTTAGGTCTTTTGACATTTACATAATATATGCCTCTAC TTTCAAGTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGG GGACTATTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAA AGTTGATTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGT CAGAGCCTTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9777#0      AATTCTCGCGCCGATTCCGAGGGGCAACCGCCGCCTCGCCCCCGCGCCCCCTGCCGCCGG 60
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CGGCTTCCTCCGCGCCCTCTTCCCCTCACGGCGCTCCCGCCCTCCGCCAGAGAAGGACGA 120
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GCTCCTCCGCCTCATCGCCGACCAATGCCGCGGCCTCGACACCCAGTCCGACCCCTCCCG 180
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CCTCGCCGACATCGTCTCCTGCATCGACGCCCTCGCCGCCGCTGCTCCCGGATCCGATAC 240
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CGTTTCCGATGCCGACAAGCTTTCCGGTACGTGGCGGCTCCTCTGGACCACCGAGCATGA 300
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GCAGCTCTTCATCGTGCGCAACGCCCCCTTCTTCCGCACCGCCGCCGGTGATGTGTTCCA 360
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GGTAATCGACGTCCCCGGTGGCGCCCTCAACAACGTGATCACCTTCCCGCCCTCTGGCGC 420
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GTTCGTCGTGAACGGCTCCATCGAGATCCAGCCGCCCCAGCGAGTCAATTTTAGGTTTAC 480
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      ACGCGCTATGTTGAGAGGGAGCAATTGGGAGGTCCCGTTTCCGCCCTTTGGGAAAGGATG 540
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAGGGGACTA 600
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTTAGTTGTTGAACGCGCTCCATATTCATGGAATGGATAGTTGTTAAAATTCAAAGTTGA 660
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTGAATGCATAGCCAGTCTTGTGATGTGCCTTGTGAATATAAGAAGCAGATTGTCAGAGC 720
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CTTGTGCTTTCTCAGCAAAGTGTTAACCATCGTGCTATGACATTTCTTTTCCTAGACAAT 780
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      ACTATGTTCTCCCGGAATTAGATGGTAAGTTTGATTAGTAATGCATGTGCAGCAAGGTTC 840
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTCTTCCAAGGAATTGTCTAGGTTAAATAATACCTAGGTATCCCCTATGTGAGAGAACAC 900
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      AAACTTGCCAAGTATTTGATGTGCTTTTGGACATATGAAAAAGATGCTGCCCATTACGGT 960
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GAACTACGTTAGCGAACTTGACAGCATATTGTTATGGCCCACGATATCAAGAGCCATGAT 1020
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GGAATTGTTGACTGTTTCAGTACCTTTTGTTAGTATTGTTTTGCCTGTTGCTTCCAGCTT 1080
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TAAGTAGTAGTTTTTCACATTGAAGCAAGTTCTCAGCAAATCAGGTCAATGAATGCCATC 1140
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      ATCTGATTAAGATAGTAAACTATGTATGGTCTTGCTTTATCTGTATCAGGGTTCCTTTTC 1200
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CTTTTATACTCATGAGGAGTCAATGAGATCAAATCCAACTTTGCTTTGGGAAAAGTAGCA 1260
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTGTAGTGTCGCAAGCTTAATGATATGAAACATTAGATTCAGTTTCTGTAACCACTTACC 1320
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CATGATTTCTAATTCTAGGGGTTTCAGATACAGTGTTATGTTTCATTCCATCTATCAATT 1380
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GACCACTGAAGATCAGATCAACTTTTTGCAGGGATCGGGCTCTATCCTTCTACTGCCCCC 1440
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTGGAATGCTGGCAGGATTTGTAGTGCAATGAGAAGAGAATTCAATTTGCCATGTCTGAA 1500
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTTTCCTGGTTATTTTTGTTTGCTCGTTTCTTTATCTAGGAAAAATTCTGCTCAATACCT 1560
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GGTTTAATTTTTGCTGCATCGTCAATGCTCCCTGTCATTTAAGAAAAGTAAGTGAAAAGG 1620
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TATCTATGTGATAGATTGATTGAACATCACTACTTCTCCATGATATTCCAGGCCTGAACA 1680
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GAAGCACTGAAGCAAAATACTTTTGAAATGCTTTCGTTGGTCCTACTGTTGAACTGAATA 1740
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GCAAGTTCTCCTTTCAACAGCTTGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTAC 1800
consensus_9777#1      ----------------------TGTTTCAAGTGTCTAGTCTGATAATTGCTTCCTTGTAC 38
consensus_9777#2      -----------------TCCTAAGTGTCAAATATGTATGACCAGAATAGTTTT-TGGAAC 42
                                             ** **** * * **     * *** * **  * * **

consensus_9777#0      TAGACTACTGCAGGTTCTAGTCGCA-GTCGAACAACATAT--GGTGAGGCTTTAGGAGGA 1857
consensus_9777#1      TAGACTACTGCAGGTTCTAGTCGCA-GTCGAACAACATAT--GGTGAGGCTTTAGGAGGA 95
consensus_9777#2      TGTGCTGCATAATCAACAATTTATAAGTCTAACAAACTTTTCATTTTTGTTACTAGATGA 102
                      *   ** *   *    * * *   * *** *****  * *    *   * *    ** **

consensus_9777#0      CAGGTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTGTACG 1917
consensus_9777#1      CAGGTTGGACCATGGCCCTGGGCCAGACTACATTGTGTGATGTTGGGCAGTTTGTG---- 151
consensus_9777#2      CCAAATC-ATCATCTACAAGGGCTTTCCTTTCCCACCTCCATTTTTAGGGATGGTGTATA 161
                      *    *  * ***   *  ****    **        *    **     * * ***    

consensus_9777#0      CTACGTGTGAACTCATCAGCTCATCACGAACCAGCATAGAATTATTTTTCTTAGTTTGCT 1977
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      TGTTTT------------------------------------------------------ 167
                                                                                  

consensus_9777#0      TTTGTTTGTTTGGATACCATTTCCTTCACCTTGAGATATTTGGTTAAGGTGGATTGAACT 2037
consensus_9777#1      ------------------------------------------------------------
consensus_9777#2      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TAGTAATGAAGCAATTCTTTTGTAATAGCAGGCCCTCCCTGACCAAGTACTGGAGCCACT 2097
consensus_9777#1      --------------------------------CCCTCCCTGACCAAGTACTGGAGCCACT 179
consensus_9777#2      --------------------------------CTTCACCTGATCA-GTAG-AGAGTGAAT 193
                                                      *    ***** ** ***   ***  * *

consensus_9777#0      TCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATG 2157
consensus_9777#1      TCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATG 239
consensus_9777#2      GTAAATAAAGCTGGACT--GGAAACACATTTTTACCAGTTAGGTCTTTGACATT----TG 247
                        ***  *     * *   **   * *** *  *  **   * **  ****  *    **

consensus_9777#0      TGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCAC-CCTTCGAG 2216
consensus_9777#1      TGTGGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCAC-CCTTCGAG 298
consensus_9777#2      TTCAGT--TTATCAGTTCTGTTTCGTTTTATCAGT----TTCTGGTTTGACACCATCTAT 301
                      *   **  *   *  **  ** **   *   ****      *** **  ** ** ** * 

consensus_9777#0      TCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCCA 2276
consensus_9777#1      TCTTAAAAGCAATCCAAGCCGCCCGGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCC-A 357
consensus_9777#2      TTGGAAATTTGGCTTGTATGTGTTAGGTCTT--TTGACATTTACATAATATATGCCTCTA 359
                      *   ***                  * *  *      ** *     *  *   **  * *

consensus_9777#0      AGA-CACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCC-TCTGCG 2334
consensus_9777#1      AGA-CACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGACAGCGGCC-TCTGCG 415
consensus_9777#2      CTTTCAAGTTTGACACTGTCTATTTGGATGATGACATCCGCGTAGCAAAGGACATACGAG 419
                          ** *   ***   * *     *   ** *  **    *   **  ** * *  * *

consensus_9777#0      GCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCT 2394
consensus_9777#1      GCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACGAGATAAGTACATTGTACTGCT 475
consensus_9777#2      GGGACTATT-TAGTTGTTGAACGCGCTCCATAT-TCATGGAATGGATAGTTGTTAAAATT 477
                      * *** *   * * *  *** *    *     *  ** *  **   **  *  **    *

consensus_9777#0      -TCCTCCATTTCAAAATATAGCTATTTTTAGTACAGTACTTTGTTCTAAAATAAAGCTAT 2453
consensus_9777#1      -GACTCCGTTTCAAAATATAGCTATTTTTAGCATAATACTTTGTTCTAAAATAAAGCTAT 534
consensus_9777#2      CAAAGTTGATTGAATGCATAGCCAGTCTTGTGAT-GTGCCTTGTGAATATAAGAAGCAGA 536
                               ** **   ***** * * **   *   * * ****    * *  ****   

consensus_9777#0      TTCTTC-ATCTATATTCCCTAACTCATCACAACCATTCTTTTGCAAAAAAA 2503
consensus_9777#1      TT-TTC-ATCTACGTTCTC-AATCAATCACAACCATCTTTTTGAAAAA--- 579
consensus_9777#2      TTGTCAGAGCCTTGTG----------------------------------- 552
                      ** *   * *    *                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)