These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 855 fasta sequence [TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACCACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGTGCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTTAACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGTTGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTNCGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGACGCCTGTGATGTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGTNCACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAATTTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCTTGGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCTACTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAGTAGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTGATGGGGAGTGTTATTGTAACTCTACTTAGTGTCATTGGTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTTTATATTTTGACTCGGCCGGCTGCCCTTCCTAACAGGCTTAACTGCTCCGCGAAGGATTTGAGATGAATATGTGTGAACGAA] [+] EMBL CA758514 [TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACCACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGTGCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTTAACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGTTGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTNCGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGACGCCTGTGATGTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGTNCACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAATTTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCTTGGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCTACTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAGTAGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTGATGGGGAGTGTTATTGTAACTCTACTTAGTGTCATTGGTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTTTATATTTTGACTCGGCCGGCTGCCCTTCCTAACAGGCTTAACTGCTCCGCGAAGGATTTGAGATGAATATGTGTGAACGAA] consensusID : consensus_979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACCCTCCTGGTNTTGGGTTTTGTGTGTGTGTGTGTGTGTGTTACTTCTACTTCTACTTCTACAGCCTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCGTNCNCCNCAGCCTNCGCCTTCGTCCGGTGNCTCCTGGTTATGTGGTNTCNATNAGTATTCCTATTTNTCAACGTACCCGGAATAACCGACCCACCCTAATGCCACNCTGTCACATTAGCACCACCCAACCCTGTNTNACACTAGCCCTGAACAATGAGCGCNTNCATAACATTTGCACATAGCTTACTGAGTAATAACGTGGTATGCACTTAATAAAAGCAGCAACCAGGGACGGCCGGAGGCAGGCTGTGCTGAGGACGGATGAGGCTCCAGGCAGGGAAGCCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTAGTTAGAAAGTCCACCATAGTAAGCCTTGTGGCGCCAACGGTTAGAGCGCGGCGCCGTAAGCTGGCGTAAAGCGTGAATTGAGGGCTGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANAAAAAAAAAAAAAAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGATTCTCTGAAGCCTCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACATAGTTTGGGTCTACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCATGCAACCCAAGCCTTTTT] [+] EMBL CA758560 [TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACCCTCCTGGTNTTGGGTTTTGTGTGTGTGTGTGTGTGTGTTACTTCTACTTCTACTTCTACAGCCTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCGTNCNCCNCAGCCTNCGCCTTCGTCCGGTGNCTCCTGGTTATGTGGTNTCNATNAGTATTCCTATTTNTCAACGTACCCGGAATAACCGACCCACCCTAATGCCACNCTGTCACATTAGCACCACCCAACCCTGTNTNACACTAGCCCTGAACAATGAGCGCNTNCATAACATTTGCACATAGCTTACTGAGTAATAACGTGGTATGCACTTAATAAAAGCAGCAACCAGGGACGGCCGGAGGCAGGCTGTGCTGAGGACGGATGAGGCTCCAGGCAGGGAAGCCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTAGTTAGAAAGTCCACCATAGTAAGCCTTGTGGCGCCAACGGTTAGAGCGCGGCGCCGTAAGCTGGCGTAAAGCGTGAATTGAGGGCTGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANAAAAAAAAAAAAAAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGATTCTCTGAAGCCTCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACATAGTTTGGGTCTACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCATGCAACCCAAGCCTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_979#0 TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACC 60 consensus_979#1 --TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACC 58 *** **** ****************** ****************************** consensus_979#0 ACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGT 120 consensus_979#1 --CTCCTGGTNTTGGGTTTTGTGTGTGTG-----TGTGTGT-----GTGTTACTTCTACT 106 * ** * * **** * * ** * *** * ** * * * consensus_979#0 GCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTT 180 consensus_979#1 TCTACTTCTACAGC------CTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCG 160 * * ** * * **** * * ** * ** ** consensus_979#0 AACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGT 240 consensus_979#1 TNCNCCNCA-----GCCTNCGCCTTCGTCCGGT-GNCTCCT---GGTTATGTGGTNTCNA 211 * ** * **** ** ** ** * ** * ** * **** * consensus_979#0 TGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTN 300 consensus_979#1 TNAGTATTCCTATTTNTCAACGTA-CCCGGAATAACCGACCCACCCTAATGCCACNCTGT 270 * **** * ** * * * ** * * ** * * * * * * consensus_979#0 CGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGA-CGCCTGTGA 359 consensus_979#1 CACATTA-GCACCACCCAACCCTGTNTNACACTA--GCCCTGAACAATGAGCGCNTNCAT 327 * *** * ** * * ** ** * * *** *** * consensus_979#0 TGTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGT 419 consensus_979#1 AACATTTGCACATAGCTTACTGAGTAATAACGTGGTA-TGCACTTAATAAAAGCAGCAAC 386 **** * * ** * * *** ** * ** * * consensus_979#0 NCACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAA 479 consensus_979#1 CAGGGACGGCCG-GAGGCAGGCTGTGCTGAGGACGGATGA---GGCTCCAGGCAGGGAAG 442 * ** * * ** ** ** * * * * ** * ** * consensus_979#0 TTTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCT 539 consensus_979#1 CCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTAGTT------AGAAAGTCCACCA 496 * * * * * ** * * * *** ** ** ** * ** consensus_979#0 TGGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCT 599 consensus_979#1 TAGTAAGCCTTGTGGC-GCCAACGGTTAGAGCGCGGCGCCGTAAGCTGGCGTAAAGCGTG 555 * * * **** * * * * ** ** * ** consensus_979#0 ACTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAG 659 consensus_979#1 AATTGAGGGC----TGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANAAAAAAAAAAAA 611 * *** ** ** * *** * * * * * consensus_979#0 TAGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTG-ATGGGGAGTGTTATTGTAAC 718 consensus_979#1 AAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGATTCTCTGAAGCC 671 * * * * ****** * * * * * * * * * * consensus_979#0 TCTACTTAGTGTCATTG----GTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTT 774 consensus_979#1 TCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACATAGTTTGGGTC 731 *** * * * ** * * *** *** ** * *** * **** * * consensus_979#0 TATATTTTGA---CTCGGCCGGCTGC-CCTTCCTAACAGGCTTAACTGCTCCGCGAAGGA 830 consensus_979#1 TACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCA-TGCAACCCAAGCCT 790 ** * * * * ** * *** * * ****** * *** * * * consensus_979#0 TTTGAGATGAATATGTGTGAACGAA 855 consensus_979#1 TTTT--------------------- 794 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||