These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1571 fasta sequence [TTTTTTTTTTAATGGATCGAAAACGATTTGATATCTCGAGGTACTGGTACATCGAGATAGATGGGAGCAAATCTCACGGNTTATACTTCAGGTGACATATACTTTACACTGAGGAACGACTTCGATCAAATCAATTACTCATCTGTAGACTACACCAGCTTGGTACTAGGAC-TATACCAAAACCTTACATTGAAA-TGAGTTCAAAATTTGTGTTGTAAGTTGTAACACAAATGAT-ACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATT-GCTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGGCTTCGT-CCGCACCCT-GCCGCCGCCGAGCACGTCCGATCGCAAGAACGGGTTGAGCCTCCCGAGCTTCTTGGACATGCTGTTCATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCG-CCGGCTTCTTCGGCAGCGGCGGCCTACCGGACGGCGGGACTCCTCCTGCGGAGAACGCCACGGATGGGTCTCTCAGGCGCATCTTCATCCGGAGCAGCTCCATCCTGAGCTCGTCGTTCTCGCGCTGCAGCCGGGACACCTCGTCGGGAACGCCCGGCCGGTGCCGGCCGTTGAAGCTCGGCGTCGGCCTGTACGACAGCGCCGGCGACTCGCCGCCGGCGTACGACGGCGCGGCGCTCGGCGGCTGCGATGGCGCGCGGAGGCGCCGCTGCTCGTGGTACAACACCTGCACCACCGTCTGCACCGGCAGGCGGTCGTTCTGCGCCGCGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACCTTCTTCCTCTCGCCCTCGGCCAGACTCGGATGCGCCTTCAAGTAGATGTCAATGGCGCGGTACATGCCGTCCTCGTTGAACCTGGCGCGCTCCGGGATGAGCTCGGCGAGGGCGGTGAACTTGTCAACGGACAGGTTCTCGTCGGAGGCGATCTCGGCGAGGTAGCTATCCATGAGCCTGCCGACCTGGGCGACGTCGCTGTGCGGCGGCGACGCCGCCGAGCTGAAGTCGTCGTCGGTGGTGTAGTCCAGCCGTGGCGGCGGATCCGTGGTGTAGTCCAGGTCGAGGTAGCCGGCCAGGATCCTCTGCACGGCGTCGATGTCGTAGGCCGTTGTGGCGGCGGCGGCGTCGGGCGAGGAGGACGGGATGAGGAGGTCGTCGAGCACGGCCTGGCCGAGCTGCGCCGCCATTCGCTTCTCGAGGTCGAGCCGGCACGCCAGCGTCGTGTCGAGGTGGATCGCGGCGCGGAGCAGCATCGACAGGAAGCTCACCGACAGAGTGTTCCTCTCCCTCGGCAGCAGGCTCACGATCGTCTCGAGCACCACCCGCTTCTCGTGCTCCTGCCTCGCGCCCATCTTCTTCCTGTCCCTCCCGTGCATGTCCAGCCGTCGAAGAGATTTCTGGGCGTAGAGCATGATGAGTAAGGC] [-] EMBL BM420733 [TTTTTTTTTTAATGGATCGAAAACGATTTGATATCTCGAGGTACTGGTACATCGAGATAGATGGGAGCAAATCTCACGGNTTATACTTCAGGTGACATATACTTTACACTGAGGAACGACTTCGATCAAATCAATTACTCATCTGTAGACTACACCAGCTTGGTACTAGGACGTATACCAAAACCTTACATTGAAAGTGAGTTCAAAATTNGTGTTGTAAGTTGTAACACAAATGATCACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATTNGCTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGG TTCGTACCGCACCCTGGCCGCCGCCGAGCACGTCCGATCGNAAGAACGGGTTGAGCCTCCCGAGCTTCTTGG ] [-] EMBL BM420577 [ tTTTGTACTAGGAC TATACCAAAACGTTAGATTGAAA TGAGTTCAAAATTTGTGTTGTAAGTTGTAACACAAATGAT ACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCA T GCTACATAGCGATCATGNAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGGCTTCGT CCGCACCCT GCCGCCGCCGAGCACGTCCGATCGCAAGAACGGGTTGAGCCTCCCGAGCTTCTTGGACATGCTGTTCATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCG CCGGCTTCTTCGGCAGCGGCGGCCTACCGGACGGCGGGACTCCTCCTGCGG ] [+] EMBL CB659303 [ TATACCAAAACCTTACATTGCCC TTAATACAAAATTTGTGTTGTAAGTTGTAACACAAATGAT ACATTTACAAGGTTACATACTAAAATACTACCCCCCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATT GCTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGGCTTCGT CCGCACCCT GCCGCCGCCGAGCACGTCCGATCGCAAGAACGGGTTGAGCCTCCCGAGCTTCTTGGACATGCTGTTCATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCGCCCGGCTTCTTCGGCAGCGGCGGCCTACCGGACGGCGGGACTCCTCCTGCGGAGAACGCCACGGATGGGTCTCTCAGGCGCATCTTCATCCGGAGCAGCTCCATCCTGAGCTCGTCGTTCTCGCGCTGCAGCCGGGACACCTCGTCGGGAACGCCCGGCCGGTGCCGGCCGTTGAAGCTCGGCGTCGGCCTGTACGACAGCGCCGGCGACTCGCCGCCGGCGTACGACGGCGCGGCGCTCGGCGGCTGCGATGGCGCGCGGAGGCGCCGCTGCTCGTGGTACAACACCTGCACCACCGTCTGCACCGGCAGGCGGTCGTTCTGCGCCGCGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACC ] [-] EMBL CB659302 [ TTCTGCGCCGCGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACCTTCTTCCTCTCGCCCTCGGCCAGACTCGGATGCGCCTTCAAGTAGATGTCAATGGCGCGGTACATGCCGTCCTCGTTGAACCTGGCGCGCTCCGGGATGAGCTCGGCGAGGGCGGTGAACTTGTCAACGGACAGGTTCTCGTCGGAGGCGATCTCGGCGAGGTAGCTATCCATGAGCCTGCCGACCTGGGCGACGTCGCTGTGCGGCGGCGACGCCGCCGAGCTGAAGTCGTCGTCGGTGGTGTAGTCCAGCCGTGGCGGCGGATCCGTGGTGTAGTCCAGGTCGAGGTAGCCGGCCAGGATCCTCTGCACGGCGTCGATGTCGTAGGCCGTTGTGGCGGCGGCGGCGTCGGGCGAGGAGGACGGGATGAGGAGGTCGTCGAGCACGGCCTGGCCGAGCTGCGCCGCCATTCGCTTCTCGAGGTCGAGCCGGCACGCCAGCGTCGTGTCGAGGTGGATCGCGGCGCGGAGCAGCATCGACAGGAAGCTCACCGACAGAGTGTTCCTCTCCCTCGGCAGCAGGCTCACGATCGTCTCGAGCACCACCCGCTTCTCGTGCTCCTGCCTCGCGCCCATCTTCTTCCTGTCCCTCCCGTGCATGTCCAGCCGTCGAAGAGATTTCTGGGCGTAGAGCATGATGAGTAAGGC] consensusID : consensus_9790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [TTTTTTTTTTACTAGTGACTATACCAAAACCTTACATTGAAATGAGTTCANAATTTGTGTTTGTCAGTTGTAACACAAATGATACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTATAACTCCATAATATCATGCTTATTTTATTGTTCATTGTACATAGCTGATCATGNNAAATCGAAAAGCACCCATGAAGACACCCAGTCATGCATGATCACTTTTGATCAAGTGTCTTGGTTGGTCAAGCAAATGGAGTGNCTCCGCATCCTTGGTGCTGNGGTTCGTCCTGACCCTGCCTGCCGCCTGAGCACTGTCCTGATCTGCAAGAACTGGGTTTGCAGCCTCCCTGAGCTTCTTTGTGACCATGCTTGTTCATGACATCCTGCCTGCTGCTTCCTGCCTGCCTGCCTGCCGCCCTGGCTTCTTCTGGCAGCTGTGCTGGCTACCTGTGACTGGCTGGGACTCCTCCTTGCTGTGAGAACTGCCCACGGATGGGTCTCTCAGTGCGCATCTTCATCCTGGAGCCAGTCCCATCCTGAGCTCGTCGTACTACGCGCTAGANCG] [-] EMBL BM038142 [TTTTTTTTTTACTAGTGACTATACCAAAACCTTACATTGAAATGAGTTCANAATTTGTGTTTGTCAGTTGTAACACAAATGATACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTATAACTCCATAATATCATGCTTATTTTATTGTTCATTGTACATAGCTGATCATGNNAAATCGAAAAGCACCCATGAAGACACCCAGTCATGCATGATCACTTTTGATCAAGTGTCTTGGTTGGTCAAGCAAATGGAGTGNCTCCGCATCCTTGGTGCTGNGGTTCGTCCTGACCCTGCCTGCCGCCTGAGCACTGTCCTGATCTGCAAGAACTGGGTTTGCAGCCTCCCTGAGCTTCTTTGTGACCATGCTTGTTCATGACATCCTGCCTGCTGCTTCCTGCCTGCCTGCCTGCCGCCCTGGCTTCTTCTGGCAGCTGTGCTGGCTACCTGTGACTGGCTGGGACTCCTCCTTGCTGTGAGAACTGCCCACGGATGGGTCTCTCAGTGCGCATCTTCATCCTGGAGCCAGTCCCATCCTGAGCTCGTCGTACTACGCGCTAGANCG] consensusID : consensus_9790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [TTTTACACTGAAAAGATTCGATCAATCATTACTCATCCGGTAGAACTACACCCAGTTTGGTTACTAGGACTATACCAAACTTACATTGAAATGAGTTCCAAATTGTGTGTAAGTTGTAACACAAATGATACATTTACAAGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATTGGTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGTCTGGTTGGTCCAGAAATGGAGTGGCTCCGATCCTTGGGCGGTTCGTCCGACCCTGGCGCGGCGAGCACGTCGATCGCAGAACGGGTTGAGCCTCCCGAG] [-] EMBL BQ907775 [TTTTACACTGAAAAGATTCGATCAATCATTACTCATCCGGTAGAACTACACCCAGTTTGGTTACTAGGACTATACCAAACTTACATTGAAATGAGTTCCAAATTGTGTGTAAGTTGTAACACAAATGATACATTTACAAGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATTGGTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGTCTGGTTGGTCCAGAAATGGAGTGGCTCCGATCCTTGGGCGGTTCGTCCGACCCTGGCGCGGCGAGCACGTCGATCGCAGAACGGGTTGAGCCTCCCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9790#0 TTTTTTTTTTAATGGATCGAAAACGATTTGATATCTCGAGGTACTGGTACATCGAGATAG 60 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 ATGGGAGCAAATCTCACGGNTTATACTTCAGGTGACATATACTTTACACTGAGGAACGAC 120 consensus_9790#2 -----------------------------------------TTTTACACTGAAAAG---A 16 consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 TTCGATCAAATCAATTACTCATCTG-TAGA-CTACACC-AGCTTGGT-ACTAG-GACTAT 175 consensus_9790#2 TTCGATCAATC--ATTACTCATCCGGTAGAACTACACCCAGTTTGGTTACTAG-GACTAT 73 consensus_9790#1 --------------------------------------TTTTTTTTTTACTAGTGACTAT 22 ** * ***** ****** consensus_9790#0 ACCAAAACCTTACATTGAAATGAGTTCAAAATTTGTGTT-GTAAGTTGTAACACAAATGA 234 consensus_9790#2 ACCAAA--CTTACATTGAAATGAGTTCCAAATT-GTGT--GTAAGTTGTAACACAAATGA 128 consensus_9790#1 ACCAAAACCTTACATTGAAATGAGTTCANAATTTGTGTTTGTCAGTTGTAACACAAATGA 82 ****** ******************* **** **** ** ***************** consensus_9790#0 TACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACT 294 consensus_9790#2 TACATTTACAAG-TTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACT 187 consensus_9790#1 TACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTA-TAACTCCATAAT 141 ************ ********************************** ** ******* * consensus_9790#0 ATCATGCTTATTTA--TGTTCATTGCTACATAGC-GATCATGAAAAATC-AAAAGCACC- 349 consensus_9790#2 ATCATGCTTATTTA--TGTTCATTGGTACATAGC-GATCATGAAAAATC-AAAAGCACC- 242 consensus_9790#1 ATCATGCTTATTTTATTGTTCATTG-TACATAGCTGATCATGNNAAATCGAAAAGCACCC 200 ************* ********* ******** ******* ***** ********* consensus_9790#0 ATGAAGACACC-AGTCATGCATGATCACTTT-GATCAAGG--TCTGGTTGGTCAAG-AAA 404 consensus_9790#2 ATGAAGACACC-AGTCATGCATGATCACTTT-GATCAAG---TCTGGTTGGTCCAG-AAA 296 consensus_9790#1 ATGAAGACACCCAGTCATGCATGATCACTTTTGATCAAGTGTCTTGGTTGGTCAAGCAAA 260 *********** ******************* ******* ********* ** *** consensus_9790#0 TGGAGTGCCTCCG-ATCCTTGG-GC--GGCTTCGTCCGCACCCTGCC-GCCGCC-GAGCA 458 consensus_9790#2 TGGAGTGGCTCCG-ATCCTTGG-GC--GG-TTCGTCCG-ACCCTGGC-GC-GGC-GAGCA 347 consensus_9790#1 TGGAGTGNCTCCGCATCCTTGGTGCTGNGGTTCGTCCTGACCCTGCCTGCCGCCTGAGCA 320 ******* ***** ******** ** * ******* ****** * ** * * ***** consensus_9790#0 C-GTCC-GATC-GCAAGAAC-GGGTTG--AGCCTCCC-GAGCTTCTTGGACATGCTGTTC 511 consensus_9790#2 C-GTC--GATC-GCA-GAAC-GGGTTG--AGCCTCCC-GAG------------------- 379 consensus_9790#1 CTGTCCTGATCTGCAAGAACTGGGTTTGCAGCCTCCCTGAGCTTCTTTGTGACCATGCTT 380 * *** **** *** **** ***** ******** *** consensus_9790#0 ATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCGCCGGCTTCTTCGGCAGCGGCGGCCTAC 571 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 GTTCATGACATCCTGCCTGCTGCTTCCTGCCTGCCTGCCTGCCGCCCTGGCTTCTTCTGG 440 consensus_9790#0 CGGACGGCGGGACTCCTCCTGCGGAGAACGCCACGGATGGGTCTCTCAGGCGCATCTTCA 631 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 CAGCTGTGCTGGCTACCTGTGACTGGCTGGGACTCCTCCTTGCTGTGAGAACTGCCCACG 500 consensus_9790#0 TCCGGAGCAGCTCCATCCTGAGCTCGTCGTTCTCGCGCTGCAGCCGGGACACCTCGTCGG 691 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 GATGGGTCTCTCAGTGCGCATCTTCATCCTGGAGCCAGTCCCATCCTGAGCTCGTCGTAC 560 consensus_9790#0 GAACGCCCGGCCGGTGCCGGCCGTTGAAGCTCGGCGTCGGCCTGTACGACAGCGCCGGCG 751 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 TACGCGCTAGANCG---------------------------------------------- 574 consensus_9790#0 ACTCGCCGCCGGCGTACGACGGCGCGGCGCTCGGCGGCTGCGATGGCGCGCGGAGGCGCC 811 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 GCTGCTCGTGGTACAACACCTGCACCACCGTCTGCACCGGCAGGCGGTCGTTCTGCGCCG 871 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 CGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACCTTCTTCC 931 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 TCTCGCCCTCGGCCAGACTCGGATGCGCCTTCAAGTAGATGTCAATGGCGCGGTACATGC 991 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 CGTCCTCGTTGAACCTGGCGCGCTCCGGGATGAGCTCGGCGAGGGCGGTGAACTTGTCAA 1051 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 CGGACAGGTTCTCGTCGGAGGCGATCTCGGCGAGGTAGCTATCCATGAGCCTGCCGACCT 1111 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 GGGCGACGTCGCTGTGCGGCGGCGACGCCGCCGAGCTGAAGTCGTCGTCGGTGGTGTAGT 1171 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 CCAGCCGTGGCGGCGGATCCGTGGTGTAGTCCAGGTCGAGGTAGCCGGCCAGGATCCTCT 1231 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 GCACGGCGTCGATGTCGTAGGCCGTTGTGGCGGCGGCGGCGTCGGGCGAGGAGGACGGGA 1291 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 TGAGGAGGTCGTCGAGCACGGCCTGGCCGAGCTGCGCCGCCATTCGCTTCTCGAGGTCGA 1351 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 GCCGGCACGCCAGCGTCGTGTCGAGGTGGATCGCGGCGCGGAGCAGCATCGACAGGAAGC 1411 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 TCACCGACAGAGTGTTCCTCTCCCTCGGCAGCAGGCTCACGATCGTCTCGAGCACCACCC 1471 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 GCTTCTCGTGCTCCTGCCTCGCGCCCATCTTCTTCCTGTCCCTCCCGTGCATGTCCAGCC 1531 consensus_9790#2 ------------------------------------------------------------ consensus_9790#1 ------------------------------------------------------------ consensus_9790#0 GTCGAAGAGATTTCTGGGCGTAGAGCATGATGAGTAAGGC 1571 consensus_9790#2 ---------------------------------------- consensus_9790#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||