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Oryza sativa
cluster # 9824 cluster # 9824       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9824#0 length = 2088 sequences # 5  
consensus_9824#1 length = 807 sequences # 1  

consensusID : consensus_9824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2088
fasta sequence
                              [CTCCTCGCTCTGTGTGCATCCTCCCTCTCTCAGCAGCACGAGGAATCCCCGCCGCCTCACCTGCCCCGCCTGATTCCCCGCGGCCGACGCAGTCCACCGCCGGACCAGCCGCCCCCTCCTCGCTCCGTGCGCATCCTCCCTCCTCTCAGCCGTACGAATTCCCGCCGCGGTCCACTGCCGGACCACCTCATTCGCTGGTGCGCCTCCTCGCGACTCCCCGCCGCACGCCACCGCATCGTGCCCCTGCAGGCGACGTGGTGGTTCCCCCTTCCGCCAGAGCCCCATCCGAGATGGCCGCATGCAGTCGGCGTCAATCCAGGGCCTTCCATCGCCGAGCTCGATCTGCAGCCCTTGGTCGCTGGCGTTCGAAGCTGGCCTCGGTGTGGAGCACGCCGTTCCGCCTCTGTTCAAAGCCCACCAACTCCTCCAACCGTAATCCCCAACCAGACTTGCTCCATCTATCGCCAACACTCGATCTGTATCTGACTATCTGTTGGCTACTGCCCTGGAAGGACAAGGGGCATTTGATGTTGGCAGTAGTTCCTCACCATCATCTCCTTTCCCAGCGTGCACTCCTGCATCCCCAGCCATGCCAAGCCTGGCGCCGACCTCCGGCAAGGACGACCTCAACTTTGTGTTGTTCAGCGTCCAATACCCATTCAAAATATTCCAGTTGGTCAGGATGGATAGGGAATTCAGGATGGTAGTTGGTAATCTCCTGCAGTCTTCTTGGTAGATGTGGCGTTAGGATTGTGCTCCCACTCACACTCACACTCAGAGGCATATTGCCTAGGTCTACAGTCTACTCCAAACCACATAGTTCAATTCCTCCGCGTTTTAGAATTGCAGATCAATGATGCATGGCAAGGTCAGAGCGCCAATGAAGTACTAAAATGGTAAAAGAAGCTCCTGCTCCTGTAATTTCTTAGTATCTCTATGCAACAATGGATGCCCTGATATACTTTGATACAGGATGATCTGTTGATTACCATATCCGAACCATTTGTTCTGACTGTTTATATATATTGTAGATCAAGCAACTACTGATCATGCCATTTGTAGAGTTTATGTGCTTATCGTTGCAAAGTCAACAAAAGCTACAAACAACCTACAAACCTTTTGCTCCTTGGGGCTACTAAAGCGCTCTTCCTTTGGTGAAATGGCAAGACTCTGTTTCGAAGAGTATATTTGGTTGCTTCTAGAAGTAATACTTTTTGCATATAGTTTTGTTCCTTTAACCTTTTAGGATCAACTAATTTTGTTCTCCAGCACTGATTTGATCTTAATGACTCATTGCTTCCAATTCCATAAGGCAC-A-TGCTAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACA--------AGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCACTTACTGATATAAGATCATTTGTTATTCTCTTTACAAAAAA]

[+] EMBL CB661132             [CTCCTCGCTCTGTGTGCATCCTCCCTCTCTCAGCAGCACGAGGAATCCCCGCCGCCTCACCTGCCCCGCCTGATTCCCCGCGGCCGACGCAGTCCACCGCCGGACCAGCCGCCCCCTCCTCGCTCCGTGCGCATCCTCCCTCCTCTCAGCCGTACGAATTCCCGCCGCGGTCCACTGCCGGACCACCTCATTCGCTGGTGCGCCTCCTCGCGACTCCCCGCCGCACGCCACCGCATCGTGCCCCTGCAGGCGACGTGGTGGTTCCCCCTTCCGCCAGAGCCCCATCCGAGATGGCCGCATGCAGTCGGCGTCAATCCAGGGCCTTCCATCGCCGAGCTCGATCTGCAGCCCTTGGTCGCTGGCGTTCGAAGCTGGCCTCGGTGTGGAGCACGCCGTTCCGCCTCTGTTCAAAGCCCACCAACTCCTCCAACCGTAATCCCCAACCAGACTTGCTCCATCTATCGCCAACACTCGATCTGTATCTGACTATCTGTTGGCTACTGCCCTGGAAGGACAAGGGGCATTTGATGTTGGCAGTAGTTCCTCACCATCATCTCCTTTCCCAGCGTGCACTCCTGCATCCCCAGCCATGCCAAGCCTGGCGCCGACCTCCGGCAAGGACGACCTCAACTTTGTGTTGTTCAGCGTCCAATACCCATTCAAAATATTCCAGTTGGTCAGGATGGATAGGGAATTCACGATGGTAGTTGGTAATCTCCTGCAGTCTTCTTGGTAGATGTGGCGTTAGGATTGTGCTCCCACTCACACTCACACTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB640751             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GATGTTGGCAGTAGTTCCTCACCATCATCTCCTTTCCCAGCGTGCACTCCTGCATCCCCAGCCATGCCAAGCCTGGCGCCGACCTCCGGCAAGGACGACCTCAACTTTGTGTTGTTCAGCGTCCAATACCCATTCAAAATATTCCAGTTGGTCAGGATGGATAGGGAATTCAGGATGGTAGTTGGTAATCTCCTGCAGTCTTCTTGGTAGATGTGGCGTTAGGATTGTGCTCCCACTCACACTCACACTCAGAGGCATATTGCCTAGGTCTACAGTCTACTCCAAACCACATAGTTCAATTCCTCCGCGTTTTAGAATTGCAGATCAATGATGCATGGCAAGGTCAGAGCGCCAATGAAGTACTAAAATGGTAAAAGAAGCTCCTGCTCCTGTAATTTCTTAGTATCTCTATGCAACAATGGATGCCCTGATATACTTTGATACAGGATGATCTGTTGATTACCATATCCGAACCATTTGTTCTGACTGTTTATATATATTGTAGATCAAGCAACTACTGATCATGCCATTTGTAGAGTTTATGTGCTTATCGTTGCAAAGTCAACAAAAGCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK105559             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTTGGTCAGGATGGATAGGGAATTCAGGATGGTAGTTGGTAATCTCCTGCAGTCTTCTTGGTAGATGTGGCGTTAGGATTGTGCTCCCACTCACACTCACACTCAGAGGCATATTGCCTAGGTCTACAGTCTACTCCAAACCACATAGTTCAATTCCTCCGCGTTTTAGAATTGCAGATCAATGATGCATGGCAAGGTCAGAGCGCCAATGAAGTACTAAAATGGTAAAAGAAGCTCCTGCTCCTGTAATTTCTTAGTATCTCTATGCAACAATGGATGCCCTGATATACTTTGATACAGGATGATCTGTTGATTACCATATCCGAACCATTTGTTCTGACTGTTTATATATATTGTAGATCAAGCAACTACTGATCATGCCATTTGTAGAGTTTATGTGCTTATCGTTGCAAGGTCAACAAAGGCTACAAACAACCTACAAACCTTTTGCTCCTTGGGGCTACTAAAGCGCTCTTCCTTTGGTGAAATGGCAAGACTCTGTTTCGAAGAGTATATTTGGTTGCTTCTAGAAGTAATACTTTTTGCATATAGTTTTGTTCCTTTAACCTTTTAGGATCAACTAATTTTGTTCTCCAGCACTGATTTGATCTTAATGACTCATTGCTTCCAATTCCATAAGGCAC A TGCTAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATCCATAGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCACTTACTGATATAAG                           ]
[-] EMBL CB672544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tcGGCACGAGGGCTAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACA        AGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCAATGACTGATATAAGATCATTTGTTATTCTCTTTACAAAAAA]
[+] EMBL CB672543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTATTGATAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACA        AGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGGGTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCACTTACTGATATAAGATCATTTGT                  ]


>consensus_9824#0 CTCCTCGCTCTGTGTGCATCCTCCCTCTCTCAGCAGCACGAGGAATCCCCGCCGCCTCAC CTGCCCCGCCTGATTCCCCGCGGCCGACGCAGTCCACCGCCGGACCAGCCGCCCCCTCCT CGCTCCGTGCGCATCCTCCCTCCTCTCAGCCGTACGAATTCCCGCCGCGGTCCACTGCCG GACCACCTCATTCGCTGGTGCGCCTCCTCGCGACTCCCCGCCGCACGCCACCGCATCGTG CCCCTGCAGGCGACGTGGTGGTTCCCCCTTCCGCCAGAGCCCCATCCGAGATGGCCGCAT GCAGTCGGCGTCAATCCAGGGCCTTCCATCGCCGAGCTCGATCTGCAGCCCTTGGTCGCT GGCGTTCGAAGCTGGCCTCGGTGTGGAGCACGCCGTTCCGCCTCTGTTCAAAGCCCACCA ACTCCTCCAACCGTAATCCCCAACCAGACTTGCTCCATCTATCGCCAACACTCGATCTGT ATCTGACTATCTGTTGGCTACTGCCCTGGAAGGACAAGGGGCATTTGATGTTGGCAGTAG TTCCTCACCATCATCTCCTTTCCCAGCGTGCACTCCTGCATCCCCAGCCATGCCAAGCCT GGCGCCGACCTCCGGCAAGGACGACCTCAACTTTGTGTTGTTCAGCGTCCAATACCCATT CAAAATATTCCAGTTGGTCAGGATGGATAGGGAATTCAGGATGGTAGTTGGTAATCTCCT GCAGTCTTCTTGGTAGATGTGGCGTTAGGATTGTGCTCCCACTCACACTCACACTCAGAG GCATATTGCCTAGGTCTACAGTCTACTCCAAACCACATAGTTCAATTCCTCCGCGTTTTA GAATTGCAGATCAATGATGCATGGCAAGGTCAGAGCGCCAATGAAGTACTAAAATGGTAA AAGAAGCTCCTGCTCCTGTAATTTCTTAGTATCTCTATGCAACAATGGATGCCCTGATAT ACTTTGATACAGGATGATCTGTTGATTACCATATCCGAACCATTTGTTCTGACTGTTTAT ATATATTGTAGATCAAGCAACTACTGATCATGCCATTTGTAGAGTTTATGTGCTTATCGT TGCAAAGTCAACAAAAGCTACAAACAACCTACAAACCTTTTGCTCCTTGGGGCTACTAAA GCGCTCTTCCTTTGGTGAAATGGCAAGACTCTGTTTCGAAGAGTATATTTGGTTGCTTCT AGAAGTAATACTTTTTGCATATAGTTTTGTTCCTTTAACCTTTTAGGATCAACTAATTTT GTTCTCCAGCACTGATTTGATCTTAATGACTCATTGCTTCCAATTCCATAAGGCACATGC TAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGAC GCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAA GCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGG AAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCG ATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATGTTTGG CCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAAT GTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCA ATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAG GATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCAT AATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTT GCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGC TTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGT GCGTGCACTTACTGATATAAGATCATTTGTTATTCTCTTTACAAAAAA



consensusID : consensus_9824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence
                              [GACTCTGTTTCGAAGAGTATATTTGGTTGCTTCTAGAAGCACATGCTAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCACGGACTGATATAAGATCATTTGTTATTCTCTTTA]

[-] EMBL CB661133             [GACTCTGTTTCGAAGAGTATATTTGGTTGCTTCTAGAAGCACATGCTAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATGTTTGGCCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCACGGACTGATATAAGATCATTTGTTATTCTCTTTA]


>consensus_9824#1 GACTCTGTTTCGAAGAGTATATTTGGTTGCTTCTAGAAGCACATGCTAGATGGTTATTGA CAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGACGCGGCCCAACAGTC ACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAAGCCACGTCTTGCTG AAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGGAAAGATGGAAGATA GGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCGATCCAAGCCTCCGA GGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATGTTTGGCCATGGATGGATTA CGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAATGTGGAAGTTGCTTA CCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCAATGGACAATTCATA GAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAGGATTAAAATTTGGT CTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCATAATTCTGGTGAGAG TTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTTGCTGACCAACTGGA TGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGCTTGTGAAATTATGT AAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGTGCGTGCACGGACTG ATATAAGATCATTTGTTATTCTCTTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9824#0      CTCCTCGCTCTGTGTGCATCCTCCCTCTCTCAGCAGCACGAGGAATCCCCGCCGCCTCAC 60
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      CTGCCCCGCCTGATTCCCCGCGGCCGACGCAGTCCACCGCCGGACCAGCCGCCCCCTCCT 120
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      CGCTCCGTGCGCATCCTCCCTCCTCTCAGCCGTACGAATTCCCGCCGCGGTCCACTGCCG 180
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GACCACCTCATTCGCTGGTGCGCCTCCTCGCGACTCCCCGCCGCACGCCACCGCATCGTG 240
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      CCCCTGCAGGCGACGTGGTGGTTCCCCCTTCCGCCAGAGCCCCATCCGAGATGGCCGCAT 300
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GCAGTCGGCGTCAATCCAGGGCCTTCCATCGCCGAGCTCGATCTGCAGCCCTTGGTCGCT 360
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GGCGTTCGAAGCTGGCCTCGGTGTGGAGCACGCCGTTCCGCCTCTGTTCAAAGCCCACCA 420
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      ACTCCTCCAACCGTAATCCCCAACCAGACTTGCTCCATCTATCGCCAACACTCGATCTGT 480
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      ATCTGACTATCTGTTGGCTACTGCCCTGGAAGGACAAGGGGCATTTGATGTTGGCAGTAG 540
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      TTCCTCACCATCATCTCCTTTCCCAGCGTGCACTCCTGCATCCCCAGCCATGCCAAGCCT 600
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GGCGCCGACCTCCGGCAAGGACGACCTCAACTTTGTGTTGTTCAGCGTCCAATACCCATT 660
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      CAAAATATTCCAGTTGGTCAGGATGGATAGGGAATTCAGGATGGTAGTTGGTAATCTCCT 720
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GCAGTCTTCTTGGTAGATGTGGCGTTAGGATTGTGCTCCCACTCACACTCACACTCAGAG 780
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GCATATTGCCTAGGTCTACAGTCTACTCCAAACCACATAGTTCAATTCCTCCGCGTTTTA 840
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GAATTGCAGATCAATGATGCATGGCAAGGTCAGAGCGCCAATGAAGTACTAAAATGGTAA 900
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      AAGAAGCTCCTGCTCCTGTAATTTCTTAGTATCTCTATGCAACAATGGATGCCCTGATAT 960
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      ACTTTGATACAGGATGATCTGTTGATTACCATATCCGAACCATTTGTTCTGACTGTTTAT 1020
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      ATATATTGTAGATCAAGCAACTACTGATCATGCCATTTGTAGAGTTTATGTGCTTATCGT 1080
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      TGCAAAGTCAACAAAAGCTACAAACAACCTACAAACCTTTTGCTCCTTGGGGCTACTAAA 1140
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GCGCTCTTCCTTTGGTGAAATGGCAAGACTCTGTTTCGAAGAGTATATTTGGTTGCTTCT 1200
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      AGAAGTAATACTTTTTGCATATAGTTTTGTTCCTTTAACCTTTTAGGATCAACTAATTTT 1260
consensus_9824#1      ------------------------------------------------------------
                                                                                  

consensus_9824#0      GTTCTCCAGCACTGATTTGATCTTAATGACTCATTGCTTCCAATTCCATAAGGCACATGC 1320
consensus_9824#1      -------GACTCTGTTTCGAAGAGTATATTTGGTTGCTTCTAG-------AAGCACATGC 46
                               * *** ** **     **   *  ******* *        * ********

consensus_9824#0      TAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGAC 1380
consensus_9824#1      TAGATGGTTATTGACAGCCACAACACCGGCGCCGAGGCGGTCTGCCCTTTCGCCATTGAC 106
                      ************************************************************

consensus_9824#0      GCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAA 1440
consensus_9824#1      GCGGCCCAACAGTCACGCTGCTCGACTGCGCCGGTGTGCCCCCAACCTCTTGTCCTTGAA 166
                      ************************************************************

consensus_9824#0      GCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGG 1500
consensus_9824#1      GCCACGTCTTGCTGAAACGTTGCCCCAGGCACGATTAGGGCGCTTGTGGCACTAATTCGG 226
                      ************************************************************

consensus_9824#0      AAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCG 1560
consensus_9824#1      AAAGATGGAAGATAGGCTGGTGGACCTTAGCTGTGGACGACTGGGATCTTGATGGCACCG 286
                      ************************************************************

consensus_9824#0      ATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATGTTTGG 1620
consensus_9824#1      ATCCAAGCCTCCGAGGAGAGGGATGGCTGTGGAAGGGCACATCACTGACAAGATGTTTGG 346
                      ************************************************************

consensus_9824#0      CCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAAT 1680
consensus_9824#1      CCATGGATGGATTACGATCTCGCGTTCTCCAATGTGGCAAAGTTCGCTCACTTTTGCAAT 406
                      ************************************************************

consensus_9824#0      GTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCA 1740
consensus_9824#1      GTGGAAGTTGCTTACCCTTGACTAAATCAGGTTTGGAGAAGTTTGGACTGAATCAATGCA 466
                      ************************************************************

consensus_9824#0      ATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAG 1800
consensus_9824#1      ATGGACAATTCATAGAAGATTTCAAGCAGTGGAAAAAGGAGACTTCTACAACTGCCACAG 526
                      ************************************************************

consensus_9824#0      GATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCAT 1860
consensus_9824#1      GATTAAAATTTGGTCTAAGATACAGATCTTGATGGCATGGTGGTGCTGAGTGTATGCCAT 586
                      ************************************************************

consensus_9824#0      AATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTT 1920
consensus_9824#1      AATTCTGGTGAGAGTTGGATGTAATTTGCTTGCCTTCAGGATAAATTGGATGTATTTTTT 646
                      ************************************************************

consensus_9824#0      GCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGC 1980
consensus_9824#1      GCTGACCAACTGGATGTATGCTTTCTTAACCGGTTTTATTTATATATAACTTTAGTCAGC 706
                      ************************************************************

consensus_9824#0      TTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGT 2040
consensus_9824#1      TTGTGAAATTATGTAAAATTCAGTTCCTGAAGTACTGGTACTTACTGTTGATTTATTTGT 766
                      ************************************************************

consensus_9824#0      GCGTGCACTTACTGATATAAGATCATTTGTTATTCTCTTTACAAAAAA 2088
consensus_9824#1      GCGTGCACGGACTGATATAAGATCATTTGTTATTCTCTTTA------- 807
                      ********  *******************************       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)