These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1211 fasta sequence [ACTCACCAACTCCTCCCAACCAAACCACCACAATCCTCTGAATCTCACTCACTTCAAACCCATCCAGAATCCCAGATTCACAATTCTGCAGGAGCCACCACAGCATTCCGAAAATCCATTTTTTTGACAAATTCGTTCCTTTTCTTTTTCAAACAGTGAGCTTTGGGATGAAAACAAAGTCATATTATCTGCAGCATCGCATCGGCATCATATTTTTCTTTTTCTTTTTTTGTTGTTGGGATTGATTTATGACATCACATCTGGCGTTGATGTCGTGCCTGCTGGTGCTGCTCCTCTCCCTCGACAAGTTCCTCCTCCACTACCTCAAGAAGCGCTGGCTCTCCCCGAGGATCTCGACTTCCCCGTCCAAATCGCGGCGATCCATGGCGGCGGCGGCGGCGGGCGGCGGTGGCGCCAAGTGGAGCGAGACGGCCATGCTCGTCATCGACATGCAGAAGGATTTCGTTGACCCGGCGATGCGGAGCCCGATGCTGGTGGATGGCGGCCAGG-CGGTGGTCCCCACCGTCGCCGAGGCGGTCGCCGTCGCGAGGGAGCGCGGCATCTACGTCGTCT-GGGTGGTCAGAGAGCATGACCCTTCTGGAGCAGATGTTGAAATTTTTCGGAGACGCTATTATTCTGGT-GGGAAGGGCCCAACAGTGAAAGGTTTGAAAGGTGCTGATCTAGCTGATGGGCTTGTTATCAAAGAAGGGGAATACAAGTTGGTGAAGACAAGGTTCAGTGCTTTCTTTGCGACACCCCTTGATTCTGTCCTCAAAACCTCAGGAATAAAGAAATTGGTTATCGTTGGGGTTCAAACACCAAATTGCATCCGGCAGACAGTCTTTGATGCTGTAGCATTGGACTATGAGAAAGTGACAGTCATTATTGATGCAACAGCTGCTGCTAGGCCAGAGATCCATCTGTCAAATATAAGAGATATGAAGAATATCGGAGTGGAAACACCAACCTTGGAAGAATGGCGACGATAAAATTGCTGTTTCTAGTGATATACTACATGCTCAACTCCAAAGTATTGGAGACATCCCTGTTCCTTTCCATCTCAGT-GGGTGTAATTAT-ATTAACCTTATGTCAGGTAGA-CCAA-CAGCAGATACT-GTTTATATATATATATATATTCAACTGTACAACTCCTAACCATTCCTATATAAAATTGATCATATTGGGATTACTGCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU176537 [ACTCACCAACTCCTCCCAACCAAACCACCACAATCCTCTGAATCTCACTCACTTCAAACCCATCCAGAATCCCAGATTCACAATTCTGCAGGAGCCACCACAGCATTCCGAAAATCCATTTTTTTGACAAATTCGTTCCTTTTCTTTTTCAAACAGTGAGCTTTGGGATGAAAACAAAGTCATATTATCTGCAGCATCGCATCGGCATCATATTTTTCTTTTTCTTTTTTTGTTGTTGGGATTGATTTATGACATCACATCTGGCGTTGATGTCGTGCCTGCTGGTGCTGCTCCTCTCCCTCGACAAGTTCCTCCTCCACTACCTCAAGAAGCGCTGGCTCTCCCCGAGGATCTCGACTTCCCCGTCCAAATCGCGGCGATCCATGGCGGCGGCGGCGGCGGGCGGCGGTGGCGCCAAGTGGAGCGAGACGGCCATGCTCGTCATCGACATGCAGAAGGATTTCGTTGACCCGGCGATGCGGAGCCCGATGCTGGTGGATGGCGGCCAGG CGGTGGTCCCCACCGTCGCCGAGGCGGTCGCCGTCGCGAGGGAGCGCGGCATCTACGTCGTCT GGGTGGTCAGAGAGCATGACCCTTCTGGAGCAGATGTTGAAATTTTTC ] [+] EMBL AK100588 [ GTGCTGCTCCTCTCCCTCGACAAGTTCCTCCTCCACTACCTCAAGAAGCGCTGGCTCTCCCCGAGGATCTCGACTTCCCCGTCCAAATCGCGGCGATCCATGGCGGCGGCGGCGGCGGGCGGCGGTGGCGCCAAGTGGAGCGAGACGGCCATGCTCGTCATCGACATGCAGAAGGATTTCGTTGACCCGGCGATGCGGAGCCCGATGCTGGTGGATGGCGGCCAGG CGGTGGTCCCCACCGTCGCCGAGGCGGTCGCCGTCGCGAGGGAGCGCGGCATCTACGTCGTCT GGGTGGTCAGAGAGCATGACCCTTCTGGAGCAGATGTTGAAATTTTTCGGAGACGCTATTATTCTGGT GGGAAGGGCCCAACAGTGAAAGGTTTGAAAGGTGCTGATCTAGCTGATGGGCTTGTTATCAAAGAAGGGGAATACAAGTTGGTGAAGACAAGGTTCAGTGCTTTCTTTGCGACACCCCTTGATTCTGTCCTCAAAACCTCAGGAATAAAGAAATTGGTTATCGTTGGGGTTCAAACACCAAATTGCATCCGGCAGACAGTCTTTGATGCTGTAGCATTGGACTATGAGAAAGTGACAGTCATTATTGATGCAACAGCTGCTGCTAGGCCAGAGATCCATCTGTCAAATATAAGAGATATGAAGAATATCGGAGTGGAAACACCAACCTTGGAAGAATGGCGACGATAAAATTGCTGTTTCTAGTGATATACTACATGCTCAACTCCAAAGTATTGGAGACATCCCTGTTCCTTTCCATCTCAGT GGGTGTAATTAT ATTAACCTTATGTCAGGTAGA CCAA CAGCAGATACT GTTTATATATATATATATATTCAACTGTACAACTCCTAACCATTCCTATATAAAATTGATCATATTGG ] [+] EMBL CF336136 [ GTTCCTCCTCCACTACCTCAAGAAGCGCTGGCTCTCCCCGAGGATCTCGACTTCCCCGTCCAAATCGCGGCGATCCATGGCGGCGGCGGCGGCGGGCGGCGGTGGCGCCAAGTGGAGCGAGACGGCCATGCTCGTCATCGACATGCAGAAGGATTTCGTTGACCCGGCGATGCGGAGCCCGATGCTGGTGGATGGCGG CAGGCCGGTGGTCCCCACCGTCGCCGAGGCGGTCGCCGTCGCGAGGGAGCGCGGCATCTACGTCGTCTGGGGTGGTCAGAGAGCATGACCCTTCTGGAGCAGATGTTGAAATTTTTCGGAGACGCTATTATTCTGGTGGGGAAGGGCCCAACAGTGAAAGGTTTGAAAGGTGCTGATCTAGCTGATGGGCTTGTTAT AAAGAAGGGGAATACAA ] [+] EMBL AU070560 [ AGCGAGACGGCCATGCTCGTCATCGACATGCAGAAGGATTTCGTTGACCCGGCGATGCGGA CCCGATGCTGGTGGATGGCGGCCAGG CGGTGGTCCCCACCGTCGCCGAGGCGGTCGCCGTCGCGAGGGAGCGCGGCATCTACGTCGTCT GGGTGGTCAGAGAGCATGACCCTTCTGGAGCAGATGTTGAAATTTTTCGGAGACGCTATTATTCTGGT GGGAAGGGCCCAACAGTGAAAGGTTTGAAAGGTGCTGATCTAGCTGATGGGCTTGTTATCAAAGAAGGGGAATACAAGTTGGTGAAGACAAGGTTCAGTGCTTTCTTTGCGACACCCCTTGATTCTGTCCTCAAAACCTCAGGAATAAAGAAATTGGTTATCGTTGGGGTTCAAACACCAAATTGCATCCGGCAGACAGTCTTTGATGCTGTAGCATTGGACTATGAGAAAGTGACAGTCATTATTGATGCAACAGCTGCTGCTAGGCCAGAGATCCATCTGTCAAATATAAGAGATATGAAGAATATCGGAGTGGAAACACCAACCTTGGAAGAATGGCGACGATAAAATTGCTGTTTCTAGTGNTATACTACATGCTCAACTCCAAAGTATTNGAGANATCCCTGTTTCTTTCCATCTCAGTGGGGTGTAATTATAATTAACCTTATGTCAGGTAGACCCAACCAGCAGATACTGGTTTAanat ] [+] EMBL AU174055 [ ACCCTTCTGGAGCAGATGTTGAAATTTTTCGGAGACGCTATTATTCTGGT GGGAAGGGCCCAACAGTGAAAGGTTTGAAAGGTGCTGATCTAGCTGATGGGCTTGTTATCAAAGAAGGGGAATACAAGTTGGTGAAGACAAGGTTCAGTGCTTTCTTTGCGACACCCCTTGATTCTGTCCTCAAAACCTCAGGAATAAAGAAATTGGTTATCGTTGGGGTTCAAACACCAAATTGCATCCGGCAGACAGTCTTTGATGCTGTAGCATTGGACTATGAGAAAGTGACAGTCATTATTGATGCAACAGCTGCTGCTAGGCCAGAGATCCATCTGTCAAATATAAGAGATATGAAGAATATCGGAGTGGAAACACCAACCTTGGAAGAATGGCGACGATAAAATTGCTGTTTCTAGTGATATACTACATGCTCAACTCCAAAGTAT ] [+] EMBL AU174056 [ TCTGTCCTCAAAACCTCAGGAATAAAGAAATTGGTTATCGTTGGGGTTCAAACACCAAATTGCATCCGGCAGACAGTCTTTGATGCTGTAGCATTGGACTATGAGAAAGTGACAGTCATTATTGATGCAACAGCTGCTGCTAGGCCAGAGATCCATCTGTCAAATATAAGAGATATGAAGAATATCGGAGTGGAAACACCAACCTTGGAAGAATGGCGACGATAAAATTGCTGTTTCTAGTGATATACTACATGCTCAACTCCAAAGTATTGGAGACATCCCTGTTCCTTTCCATCTCAGT GGGTGTAATTAT ATTAACCTTATGTCAGGTAGA CCAA CAGCAGATACT GTTTATATATATATATATATTCAACTGTACAACTCCTAACCATTCCTATATAAAATTGATCATATTGGGATTACTGCTAAAAAAAAA ] [+] EMBL AU097321 [ TGGAAACACCAACCTTGGAAGAATGGCGACGATAAAATTGCTGTTTCTAGTGATATACTACATGCTCAACTCCAAAGTATTGGAGACATCCCTGTTCCTTTCCATCTCAGT GGGTGTAATTAT ATTANCCTTATGTCAGGTAGA CCAA CAGCAGATACT GTTTATATATATATATATATTCAACTGTACAACTCCTAACCATTCCTATATAAAATTGATCATATTGGGATTACTGCTAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||