These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1851 fasta sequence [GTCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAGGACGATAATGAACTTGAGACGGAAACCATGAGGGCATTAGCCGAAATGAGAAGAAGTGCAAAGGAGAAAGAACTGAATGCATTGCTTTCTGGAGATAATGACTCTTGCTCTTGCTTCATTGAGGTTCAGGCAGGAGCTGGAGGTACTGAGAGCATGGATTGGGCTGCAATGGTTATGAACATGTACAGCTCATGGGCCCAACGACGAGGATACACAGTCAGTATTATAGAAGAAATGCCTGGTGAAATAGCAGGAATCAAGAGGGCAACTATCAAAGTGGATGGTGAATATGCATTTGGATATGCTAAAGCCGAAGTAGGTGTTCATAGATTGGTACGGATTTCTCCATTTGACAGTGGAAAGAGGCGGCACACTTCCTTTGCTGCTGTGGCTGTTGTACCTATTCTTGGTGATGGTTCTACCCGATACCAGATAAAAGATTCAGATCTTCGGATAGAGCGTTTCCGCTCTGGTGGTCCTGGTGGCCAACATGCCAACTGCACAGAAAGTGCTGTTAGAATTGTGCACATTCCAACTGGTATAACTGCAACTTGTCAAAATGAAAGATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTC-ATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAATAGTAGTCTCCTAAATATAGTCGTTTCTAGTTTCTACTCAATCCAGCTGTCATACATAAATTGTTTCTTTTTGTATTCCACTGGCATGAATCAACTATGGTGCAATC] [+] EMBL AK073807 [GTCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAGGACGATAATGAACTTGAGACGGAAACCATGAGGGCATTAGCCGAAATGAGAAGAAGTGCAAAGGAGAAAGAACTGAATGCATTGCTTTCTGGAGATAATGACTCTTGCTCTTGCTTCATTGAGGTTCAGGCAGGAGCTGGAGGTACTGAGAGCATGGATTGGGCTGCAATGGTTATGAACATGTACAGCTCATGGGCCCAACGACGAGGATACACAGTCAGTATTATAGAAGAAATGCCTGGTGAAATAGCAGGAATCAAGAGGGCAACTATCAAAGTGGATGGTGAATATGCATTTGGATATGCTAAAGCCGAAGTAGGTGTTCATAGATTGGTACGGATTTCTCCATTTGACAGTGGAAAGAGGCGGCACACTTCCTTTGCTGCTGTGGCTGTTGTACCTATTCTTGGTGATGGTTCTACCCGATACCAGATAAAAGATTCAGATCTTCGGATAGAGCGTTTCCGCTCTGGTGGTCCTGGTGGCCAACATGCCAACTGCACAGAAAGTGCTGTTAGAATTGTGCACATTCCAACTGGTATAACTGCAACTTGTCAAAATGAAAGATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTC ATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAATAGTAGTCTCCTAAATATAGTCGTTTCTAGTTTCTACTCAATCCAGCTGTCATACATAAATTGTTTCTTTTTGTATTCCACTGGCATGAATCAACTATGGTGCAATC] [+] EMBL CB639934 [ TCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAAGA ] [+] EMBL CB636228 [ TCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGC ] [+] EMBL CB636306 [ tccgcaCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCTGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAt ] [-] EMBL CB636307 [ ATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTCNATTGTTAGCC ] [+] EMBL AU082985 [ TCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTC ATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAATAGTAGTCTCCTAAATATAGTCGTTTCTAa ] consensusID : consensus_9855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [CAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAAGNGGAAGGCCGC] [-] EMBL CB636229 [CAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAAGNGGAAGGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9855#0 GTCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCT 60 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 CTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGA 120 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 TAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGC 180 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 CGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGC 240 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 GGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGAC 300 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 GATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGT 360 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 CAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTC 420 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 TGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCG 480 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 TGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGAT 540 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 GGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAGGACGATAATGAACTTGAGACGGA 600 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 AACCATGAGGGCATTAGCCGAAATGAGAAGAAGTGCAAAGGAGAAAGAACTGAATGCATT 660 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 GCTTTCTGGAGATAATGACTCTTGCTCTTGCTTCATTGAGGTTCAGGCAGGAGCTGGAGG 720 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 TACTGAGAGCATGGATTGGGCTGCAATGGTTATGAACATGTACAGCTCATGGGCCCAACG 780 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 ACGAGGATACACAGTCAGTATTATAGAAGAAATGCCTGGTGAAATAGCAGGAATCAAGAG 840 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 GGCAACTATCAAAGTGGATGGTGAATATGCATTTGGATATGCTAAAGCCGAAGTAGGTGT 900 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 TCATAGATTGGTACGGATTTCTCCATTTGACAGTGGAAAGAGGCGGCACACTTCCTTTGC 960 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 TGCTGTGGCTGTTGTACCTATTCTTGGTGATGGTTCTACCCGATACCAGATAAAAGATTC 1020 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 AGATCTTCGGATAGAGCGTTTCCGCTCTGGTGGTCCTGGTGGCCAACATGCCAACTGCAC 1080 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 AGAAAGTGCTGTTAGAATTGTGCACATTCCAACTGGTATAACTGCAACTTGTCAAAATGA 1140 consensus_9855#1 ------------------------------------------------------------ consensus_9855#0 AAGATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCA 1200 consensus_9855#1 -----------------------------CAATGGCAGTGCTCCAGTCTCGGCTGGACCA 31 ******************************* consensus_9855#0 GCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAAT 1260 consensus_9855#1 GCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAAT 91 ************************************************************ consensus_9855#0 CAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCT 1320 consensus_9855#1 CAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCT 151 ************************************************************ consensus_9855#0 CCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTT 1380 consensus_9855#1 CCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTT 211 ************************************************************ consensus_9855#0 CATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAG 1440 consensus_9855#1 CATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAG 271 ************************************************************ consensus_9855#0 TCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCC 1500 consensus_9855#1 TCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCC 331 ************************************************************ consensus_9855#0 ACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAA 1560 consensus_9855#1 ACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAA 391 ************************************************************ consensus_9855#0 TATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCA 1620 consensus_9855#1 TATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCA 451 ************************************************************ consensus_9855#0 GAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTT 1680 consensus_9855#1 GAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTT 511 ************************************************************ consensus_9855#0 GTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATG 1740 consensus_9855#1 GTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATG 571 ************************************************************ consensus_9855#0 GCAATAGTAGTCTCCTAAATATAGTCGTTTCTAGTTTCTACTCAATCCAGCTGTCATACA 1800 consensus_9855#1 GCAAGNGGAAGGCCGC-------------------------------------------- 587 **** * * * consensus_9855#0 TAAATTGTTTCTTTTTGTATTCCACTGGCATGAATCAACTATGGTGCAATC 1851 consensus_9855#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||