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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1851 fasta sequence
[GTCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAGGACGATAATGAACTTGAGACGGAAACCATGAGGGCATTAGCCGAAATGAGAAGAAGTGCAAAGGAGAAAGAACTGAATGCATTGCTTTCTGGAGATAATGACTCTTGCTCTTGCTTCATTGAGGTTCAGGCAGGAGCTGGAGGTACTGAGAGCATGGATTGGGCTGCAATGGTTATGAACATGTACAGCTCATGGGCCCAACGACGAGGATACACAGTCAGTATTATAGAAGAAATGCCTGGTGAAATAGCAGGAATCAAGAGGGCAACTATCAAAGTGGATGGTGAATATGCATTTGGATATGCTAAAGCCGAAGTAGGTGTTCATAGATTGGTACGGATTTCTCCATTTGACAGTGGAAAGAGGCGGCACACTTCCTTTGCTGCTGTGGCTGTTGTACCTATTCTTGGTGATGGTTCTACCCGATACCAGATAAAAGATTCAGATCTTCGGATAGAGCGTTTCCGCTCTGGTGGTCCTGGTGGCCAACATGCCAACTGCACAGAAAGTGCTGTTAGAATTGTGCACATTCCAACTGGTATAACTGCAACTTGTCAAAATGAAAGATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTC-ATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAATAGTAGTCTCCTAAATATAGTCGTTTCTAGTTTCTACTCAATCCAGCTGTCATACATAAATTGTTTCTTTTTGTATTCCACTGGCATGAATCAACTATGGTGCAATC]
[+] EMBL AK073807 [GTCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAGGACGATAATGAACTTGAGACGGAAACCATGAGGGCATTAGCCGAAATGAGAAGAAGTGCAAAGGAGAAAGAACTGAATGCATTGCTTTCTGGAGATAATGACTCTTGCTCTTGCTTCATTGAGGTTCAGGCAGGAGCTGGAGGTACTGAGAGCATGGATTGGGCTGCAATGGTTATGAACATGTACAGCTCATGGGCCCAACGACGAGGATACACAGTCAGTATTATAGAAGAAATGCCTGGTGAAATAGCAGGAATCAAGAGGGCAACTATCAAAGTGGATGGTGAATATGCATTTGGATATGCTAAAGCCGAAGTAGGTGTTCATAGATTGGTACGGATTTCTCCATTTGACAGTGGAAAGAGGCGGCACACTTCCTTTGCTGCTGTGGCTGTTGTACCTATTCTTGGTGATGGTTCTACCCGATACCAGATAAAAGATTCAGATCTTCGGATAGAGCGTTTCCGCTCTGGTGGTCCTGGTGGCCAACATGCCAACTGCACAGAAAGTGCTGTTAGAATTGTGCACATTCCAACTGGTATAACTGCAACTTGTCAAAATGAAAGATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTC ATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAATAGTAGTCTCCTAAATATAGTCGTTTCTAGTTTCTACTCAATCCAGCTGTCATACATAAATTGTTTCTTTTTGTATTCCACTGGCATGAATCAACTATGGTGCAATC]
[+] EMBL CB639934 [ TCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAAGA ]
[+] EMBL CB636228 [ TCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCGTGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGATGGAGC ]
[+] EMBL CB636306 [ tccgcaCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCTCTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGATAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGCCGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGCGGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGACGATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGTCAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCTGTTGTCTGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAt ]
[-] EMBL CB636307 [ ATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTCNATTGTTAGCC ]
[+] EMBL AU082985 [ TCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTC ATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAATAGTAGTCTCCTAAATATAGTCGTTTCTAa ]
consensusID : consensus_9855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAAGNGGAAGGCCGC]
[-] EMBL CB636229 [CAATGGCAGTGCTCCAGTCTCGGCTGGACCAGCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAATCAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCTCCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTTCATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAGTCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCCACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAATATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCAGAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTTGTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATGGCAAGNGGAAGGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9855#0 GTCGGAGCCGACGCGAATGGCTTCCCGCCTCCTAACCAGATCAACCGCCGCGCGCCTCCT 60
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 CTCCCACCTCCGCTCCTCCGGGGCCCTGAGCCCTACCCACCACCACCACCACCACCTCGA 120
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 TAATGGCGCCGCCTTGGCCTCCCTCCTGGGACTCGGCCGCGGTGGCCTCCCTGCGGCGGC 180
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 CGGACCATGGTCCCCTCGAGACCCGCCGACGCGGTGGTTCTCTTCCCCGGCTACGGTGGC 240
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 GGAGGCGCCGATGACCGCGGACGGGCTCACGGTGGACTCGATCGCGGGGAAGGGGTGGAC 300
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 GATCCTCCCCGAGGCCGAGAGCGACTGGCGCAGCCACGCCGCCGCCGTCGCGCAGTCCGT 360
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 CAAGCTCATCAAGAAGCGGCTCAAGTGGGGATGGATACTTGAGAGATCAAGGCAGTTGTC 420
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 TGTGGTGTTGGAGAGGCCGGACCTCTGGGATGATCCAGTTTTCGCTGGGAAGGTTAGCCG 480
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 TGAACATGGTGAGCTCATGGGCAAGATTAAATCAGTGAACCAATTCGAGCAGGAGTTGAT 540
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 GGAGCACATTGACATGTTGAGGCTTGCAAGAGAAGAGGACGATAATGAACTTGAGACGGA 600
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 AACCATGAGGGCATTAGCCGAAATGAGAAGAAGTGCAAAGGAGAAAGAACTGAATGCATT 660
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 GCTTTCTGGAGATAATGACTCTTGCTCTTGCTTCATTGAGGTTCAGGCAGGAGCTGGAGG 720
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 TACTGAGAGCATGGATTGGGCTGCAATGGTTATGAACATGTACAGCTCATGGGCCCAACG 780
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 ACGAGGATACACAGTCAGTATTATAGAAGAAATGCCTGGTGAAATAGCAGGAATCAAGAG 840
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 GGCAACTATCAAAGTGGATGGTGAATATGCATTTGGATATGCTAAAGCCGAAGTAGGTGT 900
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 TCATAGATTGGTACGGATTTCTCCATTTGACAGTGGAAAGAGGCGGCACACTTCCTTTGC 960
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 TGCTGTGGCTGTTGTACCTATTCTTGGTGATGGTTCTACCCGATACCAGATAAAAGATTC 1020
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 AGATCTTCGGATAGAGCGTTTCCGCTCTGGTGGTCCTGGTGGCCAACATGCCAACTGCAC 1080
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 AGAAAGTGCTGTTAGAATTGTGCACATTCCAACTGGTATAACTGCAACTTGTCAAAATGA 1140
consensus_9855#1 ------------------------------------------------------------
consensus_9855#0 AAGATCACAGCATATGAATAAGGCATCAGCAATGGCAGTGCTCCAGTCTCGGCTGGACCA 1200
consensus_9855#1 -----------------------------CAATGGCAGTGCTCCAGTCTCGGCTGGACCA 31
*******************************
consensus_9855#0 GCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAAT 1260
consensus_9855#1 GCTTGAGATTGCCCGCCAAGCACAGATGAATGCAGACCACACGCAATCACTCTCTGAAAT 91
************************************************************
consensus_9855#0 CAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCT 1320
consensus_9855#1 CAGCTGGGGAAACCAAATAAGATCTTATGTACTCCATCCATATCGTATGGTCAAAGATCT 151
************************************************************
consensus_9855#0 CCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTT 1380
consensus_9855#1 CCGGACAAACTACGAAGTATCCGACCCTGATTCAGTCCTCAATGGGGACCTAGATGATTT 211
************************************************************
consensus_9855#0 CATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAG 1440
consensus_9855#1 CATCTTGAACTTTTTGTCAACGTCACTGGATGAAGCTGATTGAAGTGCCTGTGCCTGAAG 271
************************************************************
consensus_9855#0 TCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCC 1500
consensus_9855#1 TCCCTGAAGACAAACCATGCTTAAATTTAGCCTCAGCCTCAATGATCAATCATTCGATCC 331
************************************************************
consensus_9855#0 ACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAA 1560
consensus_9855#1 ACTGAGATACAGTCCAAGAGATGGTAAGAGGGCAGCTTCATTCTTTCCAATACTGACAAA 391
************************************************************
consensus_9855#0 TATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCA 1620
consensus_9855#1 TATGACATCTCAAATGGTGAAAGACCAAGGTGTGCAACAATTTTTCAAGTGCAAATATCA 451
************************************************************
consensus_9855#0 GAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTT 1680
consensus_9855#1 GAGCTAGAACGAGCTTATATTAGCTTTCTAGTTAGAAAAATGGAAATATAATGAACTTTT 511
************************************************************
consensus_9855#0 GTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATG 1740
consensus_9855#1 GTTTCATTGTTAGCCCATAGTTCCTTTTTGTATTACTGGTGCTGGTGCTATTTGTGAATG 571
************************************************************
consensus_9855#0 GCAATAGTAGTCTCCTAAATATAGTCGTTTCTAGTTTCTACTCAATCCAGCTGTCATACA 1800
consensus_9855#1 GCAAGNGGAAGGCCGC-------------------------------------------- 587
**** * * *
consensus_9855#0 TAAATTGTTTCTTTTTGTATTCCACTGGCATGAATCAACTATGGTGCAATC 1851
consensus_9855#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||