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Oryza sativa
cluster # 9857 cluster # 9857       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9857#0 length = 1499 sequences # 4  
consensus_9857#1 length = 1166 sequences # 1  
consensus_9857#2 length = 506 sequences # 1  
consensus_9857#3 length = 390 sequences # 1  

consensusID : consensus_9857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1499
fasta sequence
                              [CCCAGTAGTGTTCCCCATTCCCCACTCCGTCCTAAACGGCAAAACCCTAAACCCGACACCGCCATGGCCGCCGCCGTCCGCCGCCTCCTGCGCCGCGGCCTCTCCACGGCCACCGCTCCGCCGCCCACCCCGGGATCCATCCTTAACCCGTCCTCCCCATCCACCCCGCTCACATCGCGGCAGAAGAGCCGCCTCGCCATCTCCCTCCTCAAGTCCACCCCGCCGCCGCCCCCCGACCAGATCCTCTCCATCTGCCGCGCCGCGGC-TTCTCCCCGGACTCCCACCTCGACCGCGTGGCCCTCTCCCTCGCCGCCTCGAAGCTCTCTTCCGCCCCGGACTCCGTTCGCGACCTCGCCTCCTCCCTCCTCACTCCCCACCACGCCCCCCACGCCATCGCGCTCTTCGGCCAGGCCGGCCTCCTCCCCGACGCCGTCTCCACCTTCAAGTCCTCCCCGTCGACCCGCTCCCTCAACGCCCTCCTCTTCGCCTGCCTCGTCTCCGGCAACCACGCCGAGGCTGCCCGCGTCTTCCAG-ACCTTCCCCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCGCCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTGTGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGTTTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGCCAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGGCATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATTTGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGATGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTTGTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCAGGAATTGGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAATTAGTGTGGTTCAGGAGATCGATATAATAACCATACATTCATACTTTTGTCATTTTTAAAAA]

[+] EMBL AK071275             [CCCAGTAGTGTTCCCCATTCCCCACTCCGTCCTAAACGGCAAAACCCTAAACCCGACACCGCCATGGCCGCCGCCGTCCGCCGCCTCCTGCGCCGCGGCCTCTCCACGGCCACCGCTCCGCCGCCCACCCCGGGATCCATCCTTAACCCGTCCTCCCCATCCACCCCGCTCACATCGCGGCAGAAGAGCCGCCTCGCCATCTCCCTCCTCAAGTCCACCCCGCCGCCGCCCCCCGACCAGATCCTCTCCATCTGCCGCGCCGCGGCGCTCTCCCCGGACTCCCACCTCGACCGCGTGGCCCTCTCCCTCGCCGCCTCGAAGCTCTCTTCCGCCCCGGACTCCGTTCGCGACCTCGCCTCCTCCCTCCTCACTCCCCACCACGCCCCCCACGCCATCGCGCTCTTCGGCCAGGCCGGCCTCCTCCCCGACGCCGTCTCCACCTTCAAGTCCTCCCCGTCGACCCGCTCCCTCAACGCCCTCCTCTTCGCCTGCCTCGTCTCCGGCAACCACGCCGAGGCTGCCCGCGTCTTCCAG ACCTTCCCCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCGCCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTGTGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGTTTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGCCAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGGCATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATTTGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGATGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTTGTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCAGGAATTGGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAATTAGTGTGGTTCAGGAGATCGATATAATAA                                ]
[+] EMBL C72703               [                                                      GACACCGCCATGGCCGCCGCCGTCCGCCGCCTCCTGCGCCGCGGCCTCTCCACGGCCACCGCTCCGCCGCCCACCCCGGGATCCATCCTTAACCCGTCCTCCCCATCCACCCCGCTCACATCGCGGCAGAAGAGCCGCCTCGCCATCTCCCTCCTCAAGTCCACCCCGCCGCCGCCCCCCGACCAGATCCTCTCCATCTGCCGCGCCGNGGC TTCTCCCCGGACTCCCACCTCGACCGCGTGGCCCTCTCCCTCGCCGCCTCGAAGCTCTCTTCCGCCCCGGACTCCGTTCGCGAACTCGCCTCCTCCCTCCTCACTCCCCAACANGCCCCCCAAGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C98810               [                                                                                                                                                                                                                                    CCCCCCGACCAGATCCTCTCCATCTGCCGCGCCGCGGC TTCTCCCCGGACTCCCACCTCGACCGCGTGGCCCTCTCCCTCGCCGCCTCGAAGCTCTCTTCCGCCCCGGACTCCGTTCGCGACCTCGCCTCCTCCCTCCTCACTCCCCACCACGCCCCCCACGCCATCGCGCTCTTCGGCCAGGCCGGCCTCCTCCCCGACGCCGTCTCCACCTTCAAGTCCTCCCCGTCGACCCGCTCCCTCAACGCCCTCCTCTTCGCCTGCCTCGTCTCCGGCAACCACGCCGAGGCTGCCCGCGTCTTCCAGAACTTTCCCCGATGCGTACTCCGTCAAG CCAACATTGACA CTTCAACG CATTATCAAGT CTTNGGCGAGT CGGGA CAAAANGT CTTTTAATNGGGGCTga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU182329             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATAGCAGCCAGGAATTGGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAATTAGTGTGGTTCAGGAGATCGATATAATAACCATACATTCATACTTTTGTCATTTTTAAAAA]


>consensus_9857#0 CCCAGTAGTGTTCCCCATTCCCCACTCCGTCCTAAACGGCAAAACCCTAAACCCGACACC GCCATGGCCGCCGCCGTCCGCCGCCTCCTGCGCCGCGGCCTCTCCACGGCCACCGCTCCG CCGCCCACCCCGGGATCCATCCTTAACCCGTCCTCCCCATCCACCCCGCTCACATCGCGG CAGAAGAGCCGCCTCGCCATCTCCCTCCTCAAGTCCACCCCGCCGCCGCCCCCCGACCAG ATCCTCTCCATCTGCCGCGCCGCGGCTTCTCCCCGGACTCCCACCTCGACCGCGTGGCCC TCTCCCTCGCCGCCTCGAAGCTCTCTTCCGCCCCGGACTCCGTTCGCGACCTCGCCTCCT CCCTCCTCACTCCCCACCACGCCCCCCACGCCATCGCGCTCTTCGGCCAGGCCGGCCTCC TCCCCGACGCCGTCTCCACCTTCAAGTCCTCCCCGTCGACCCGCTCCCTCAACGCCCTCC TCTTCGCCTGCCTCGTCTCCGGCAACCACGCCGAGGCTGCCCGCGTCTTCCAGACCTTCC CCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCG CCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTG TGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGT TTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGC CAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGG CATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATT TGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGA TGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTT GTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCAGGAATT GGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGG TCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCTGAAG GGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGA AATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCT AGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTG TCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAATTA GTGTGGTTCAGGAGATCGATATAATAACCATACATTCATACTTTTGTCATTTTTAAAAA



consensusID : consensus_9857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1166
fasta sequence
                              [CTTCCCCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCGCCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTGTGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGTTTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGCCAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGGCATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATTTGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGATGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTTGTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCAGGAATTGGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCACCTGCCGAATATGTTCTGGACATTATTATCTGAGGAATATCGAATTCCATTATACCACTGGTGCGACAGAATCGCCAGACCTGGAGGGATACCATCCCTAACGAGACTGGTAAGGTGAGGACAATTACATCCATAAGCAGCCAGATCATAGGCTACTTTGTTACAGCTACCAGGACAGTGATTAACATTTGAAAGCACTAGAAAAGTCCTCAGTGAACAATTTATTTCGTGGAGAAGACCTCCTGTTGCAGCCAAACTGTATTTTGCCCCCTCATAGCGTACATTAACATCATAGAATCAGTTCCCAACTT]

[+] EMBL AK059040             [CTTCCCCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCGCCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTGTGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGTTTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGCCAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGGCATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATTTGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGATGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTTGTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCAGGAATTGGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCACCTGCCGAATATGTTCTGGACATTATTATCTGAGGAATATCGAATTCCATTATACCACTGGTGCGACAGAATCGCCAGACCTGGAGGGATACCATCCCTAACGAGACTGGTAAGGTGAGGACAATTACATCCATAAGCAGCCAGATCATAGGCTACTTTGTTACAGCTACCAGGACAGTGATTAACATTTGAAAGCACTAGAAAAGTCCTCAGTGAACAATTTATTTCGTGGAGAAGACCTCCTGTTGCAGCCAAACTGTATTTTGCCCCCTCATAGCGTACATTAACATCATAGAATCAGTTCCCAACTT]


>consensus_9857#1 CTTCCCCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTC CTTCGCCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAA GGGTGTGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGA GCGGTTTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTC GCTGCCAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGC AAAGGCATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAA TCATTTGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAA GGAGATGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTA CCTTTGTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCAG GAATTGGGTGCCGTGTTTTTCGACCATGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTC AAGGGTCGATGAGGCAAAAGGTATCATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGC TGAAGGGTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTT GCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACAT ATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAG TACTGTCTTAAGTCACCTGCCGAATATGTTCTGGACATTATTATCTGAGGAATATCGAAT TCCATTATACCACTGGTGCGACAGAATCGCCAGACCTGGAGGGATACCATCCCTAACGAG ACTGGTAAGGTGAGGACAATTACATCCATAAGCAGCCAGATCATAGGCTACTTTGTTACA GCTACCAGGACAGTGATTAACATTTGAAAGCACTAGAAAAGTCCTCAGTGAACAATTTAT TTCGTGGAGAAGACCTCCTGTTGCAGCCAAACTGTATTTTGCCCCCTCATAGCGTACATT AACATCATAGAATCAGTTCCCAACTT



consensusID : consensus_9857#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence
                              [GGTAAGGTGGTGATTTTGATACCCCCTTGGAGTGTACACATGAGATACACGCCACGGAATTGGGTCCCATGTGTTTTCGACCACTGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGCCCAAAGGTATCACTTGAGAAGATGAAGGAAAAGTTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGGCCTCAATAGAATANGCCAATGGACGAACTTCAGATGAACAGTACTGCGCCCTTGATTCAATTCATCGTTGAACATGTCTTTTTCAGAAATCAGAAACTTCACCACATTTGATCGATTGGCTTGACACGAGATTTGTTACATATGGCTAGTTCCATCTATGGCGCACCAAATTTTCCGTCTGGGATACTTGAGGCGTTTGAAAGTACTGGTCTTAATCATCTCCAATATTTCTGGCACTTATTATCTGTATTTTTACAATTAATTGTTTCACGGAGATCGATATAATAACCACCCA]

[+] EMBL BM419008             [GGTAAGGTGGTGATTTTGATACCCCCTTGGAGTGTACACATGAGATACACGCCACGGAATTGGGTCCCATGTGTTTTCGACCACTGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAAGGGTCGATGAGCCCAAAGGTATCACTTGAGAAGATGAAGGAAAAGTTCCCAGATAAGGCTGAAGGGTGGAAGGAAGTAGAGGATGCTTTGGCCTCAATAGAATANGCCAATGGACGAACTTCAGATGAACAGTACTGCGCCCTTGATTCAATTCATCGTTGAACATGTCTTTTTCAGAAATCAGAAACTTCACCACATTTGATCGATTGGCTTGACACGAGATTTGTTACATATGGCTAGTTCCATCTATGGCGCACCAAATTTTCCGTCTGGGATACTTGAGGCGTTTGAAAGTACTGGTCTTAATCATCTCCAATATTTCTGGCACTTATTATCTGTATTTTTACAATTAATTGTTTCACGGAGATCGATATAATAACCACCCA]


>consensus_9857#2 GGTAAGGTGGTGATTTTGATACCCCCTTGGAGTGTACACATGAGATACACGCCACGGAAT TGGGTCCCATGTGTTTTCGACCACTGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAA GGGTCGATGAGCCCAAAGGTATCACTTGAGAAGATGAAGGAAAAGTTCCCAGATAAGGCT GAAGGGTGGAAGGAAGTAGAGGATGCTTTGGCCTCAATAGAATANGCCAATGGACGAACT TCAGATGAACAGTACTGCGCCCTTGATTCAATTCATCGTTGAACATGTCTTTTTCAGAAA TCAGAAACTTCACCACATTTGATCGATTGGCTTGACACGAGATTTGTTACATATGGCTAG TTCCATCTATGGCGCACCAAATTTTCCGTCTGGGATACTTGAGGCGTTTGAAAGTACTGG TCTTAATCATCTCCAATATTTCTGGCACTTATTATCTGTATTTTTACAATTAATTGTTTC ACGGAGATCGATATAATAACCACCCA



consensusID : consensus_9857#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [TATCCTTGGGTAGTTGNAGGAAAAATCCCCAGATAAGGCTGNAGGTTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGATGAACAGTACTGGCCATTGATTCAATTCAATCGTTGAACATGTCTTTTTCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAATTAGTGTGGTTCAGGAGATCGATATAATAACCATACATTCATACTTTTGTCAAAAA]

[+] EMBL C98811               [TATCCTTGGGTAGTTGNAGGAAAAATCCCCAGATAAGGCTGNAGGTTGGAAGGAAGTAGAGGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGATGAACAGTACTGGCCATTGATTCAATTCAATCGTTGAACATGTCTTTTTCAGAAATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAATTAGTGTGGTTCAGGAGATCGATATAATAACCATACATTCATACTTTTGTCAAAAA]


>consensus_9857#3 TATCCTTGGGTAGTTGNAGGAAAAATCCCCAGATAAGGCTGNAGGTTGGAAGGAAGTAGA GGATGCTTTGCCTCAATAGAATAGCAGATGGACGAACTTGCAGATGAACAGTACTGGCCA TTGATTCAATTCAATCGTTGAACATGTCTTTTTCAGAAATCAGGAACTTCACCAACATTT GATCGATTGACTTGAGCAGAGATTTGTTACATATGCTAGTTCCAGCTATGGCGACAATAT TTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTACTGTCTTAAGTCATCTGCCGAATATG TTCTGGACATTATTATCTGGTATGCTGTTACAAATTAGTGTGGTTCAGGAGATCGATATA ATAACCATACATTCATACTTTTGTCAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CCCAGTAGTGTTCCCCATTCCCCACTCCGTCCTAAACGGCAAAACCCTAAACCCGACACC 60
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      GCCATGGCCGCCGCCGTCCGCCGCCTCCTGCGCCGCGGCCTCTCCACGGCCACCGCTCCG 120
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CCGCCCACCCCGGGATCCATCCTTAACCCGTCCTCCCCATCCACCCCGCTCACATCGCGG 180
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CAGAAGAGCCGCCTCGCCATCTCCCTCCTCAAGTCCACCCCGCCGCCGCCCCCCGACCAG 240
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      ATCCTCTCCATCTGCCGCGCCGCGGCTTCTCCCCGGACTCCCACCTCGACCGCGTGGCCC 300
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TCTCCCTCGCCGCCTCGAAGCTCTCTTCCGCCCCGGACTCCGTTCGCGACCTCGCCTCCT 360
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CCCTCCTCACTCCCCACCACGCCCCCCACGCCATCGCGCTCTTCGGCCAGGCCGGCCTCC 420
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TCCCCGACGCCGTCTCCACCTTCAAGTCCTCCCCGTCGACCCGCTCCCTCAACGCCCTCC 480
consensus_9857#1      ------------------------------------------------------------
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TCTTCGCCTGCCTCGTCTCCGGCAACCACGCCGAGGCTGCCCGCGTCTTCCAGACCTTCC 540
consensus_9857#1      -------------------------------------------------------CTTCC 5
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCG 600
consensus_9857#1      CCGATGCGTACTCCGTCAAGCCCAACACTGACACCTTCAACGCCATTATCAAGTCCTTCG 65
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTG 660
consensus_9857#1      CCGAGTCCGGCACCACAAGGTCCTTCTACTCGGTGCTCGATGAAATGTGCCAGAAGGGTG 125
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGT 720
consensus_9857#1      TGAAGCCCAACGCCACTACGTTTACTACGGCGATTGCTGGTTTTTACAAGGAGGAGCGGT 185
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGC 780
consensus_9857#1      TTGATGATGTAGGGAAGGTGATTGAGCTCATGAAGAAGCACGGTTGTGGTGAGTCGCTGC 245
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGG 840
consensus_9857#1      CAGTGTTCAATGTTAGGGTCCAGGGGCTGTGCAAACTTGGTCGGAGTGGCGACGCAAAGG 305
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      CATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATT 900
consensus_9857#1      CATTGCTGAATGAGATGGTGAAGAAAGGGACAAAGCCGAGCTGGCTCACTTATAATCATT 365
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGA 960
consensus_9857#1      TGATTCATGGATTCTGCAAGGAGGGGGATTTGGAGGAAGCTAAGCGGCTATACAAGGAGA 425
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTT 1020
consensus_9857#1      TGGCAAAGAAAGGGCTTGTTGGGGATAGTAGCTTCTATTATATGCTTATTTATTACCTTT 485
                                                                                  

consensus_9857#2      GGTAAGGTGGTGATTTTGATACCCCCTTGGAGTGTACACATGAGATACACGCCACGGAAT 60
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      GTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCA-GGAAT 1079
consensus_9857#1      GTAAGGGTGGTGATTTTGATACTGCCGTTGGGGTGTACAATGAGATAGCAGCCA-GGAAT 544
                                                                                  

consensus_9857#2      TGGGTCCCATGTGTTTTCGACCACTGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAA 120
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      TGGGTGCCGTGT-TTTTCGACCA-TGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAA 1137
consensus_9857#1      TGGGTGCCGTGT-TTTTCGACCA-TGAAGATGCTTGTGAATGGGCTTGCTGGAAGCTCAA 602
                                                                                  

consensus_9857#2      GGGTCGATGAGCCCAAAGGTATCACTTGAGAAGATGAAGGAAAAGTTCCCAGATAAGGCT 180
consensus_9857#3      -------------------TATC-CTTGGGTAGTTGNAGGAAAAATCCCCAGATAAGGCT 40
consensus_9857#0      GGGTCGATGAGGCAAAAGGTATC-ATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCT 1196
consensus_9857#1      GGGTCGATGAGGCAAAAGGTATC-ATTGAGAAGATGAAGGAAAAATTCCCAGATAAGGCT 661
                                         ****  *** * ** ** ******* * *************

consensus_9857#2      GAAGGGTGGAAGGAAGTAGAGGATGCTTTGGCCTCAATAGAATANGCCAATGGACGAACT 240
consensus_9857#3      GNAGGTTGGAAGGAAGTAGAGGATGCTTTG-CCTCAATAGAATAG-CAGATGGACGAACT 98
consensus_9857#0      GAAGGGTGGAAGGAAGTAGAGGATGCTTTG-CCTCAATAGAATAG-CAGATGGACGAACT 1254
consensus_9857#1      GAAGGGTGGAAGGAAGTAGAGGATGCTTTG-CCTCAATAGAATAG-CAGATGGACGAACT 719
                      * *** ************************ *************  *  ***********

consensus_9857#2      T-CAGATGAACAGTACTGCGCCCTTGATTCAATTCA-TCGTTGAACATGTCTTTTTCAGA 298
consensus_9857#3      TGCAGATGAACAGTACTG-GCCATTGATTCAATTCAATCGTTGAACATGTCTTTTTCAGA 157
consensus_9857#0      T------------------------------------------------------GCAGA 1260
consensus_9857#1      T------------------------------------------------------GCAGA 725
                      *                                                       ****

consensus_9857#2      AATCAGAAACTTCACCA-CATTTGATCGATTGGCTTGACACGAGATTTGTTACATATGGC 357
consensus_9857#3      AATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATG-C 216
consensus_9857#0      AATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATG-C 1319
consensus_9857#1      AATCAGGAACTTCACCAACATTTGATCGATTGACTTGAGCAGAGATTTGTTACATATG-C 784
                      ****** ********** ************** *****   ***************** *

consensus_9857#2      TAGTTCCATCTATGGCGCACCAAATTTTCCGTCTGGGATACTTGAGGCGTTTGAAAGTAC 417
consensus_9857#3      TAGTTCCAGCTATGGCG-ACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTAC 275
consensus_9857#0      TAGTTCCAGCTATGGCG-ACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTAC 1378
consensus_9857#1      TAGTTCCAGCTATGGCG-ACAATATTTTCCGTCTGGGATAGTTGAGGCGTTTGAAAGTAC 843
                      ******** ******** ** * ***************** *******************

consensus_9857#2      TGGTCTTAATCATCTCC--AATAT-TTCTGGCACTTATTATCTG---TATTTTTACAATT 471
consensus_9857#3      TGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAAT 335
consensus_9857#0      TGTCTTAAGTCATCTGCCGAATATGTTCTGGACATTATTATCTGGTATGCTGTTACAAAT 1438
consensus_9857#1      TGTCTTAAGTCACCTGCCGAATATGTTCTGGACATTATTATCTGA-GGAATATCGAATTC 902
                      **   * * *** ** *  ***** ******   **********      * *   *   

consensus_9857#2      AATTGT--TTCACG-GAGATCGATATAATAACCACCCA---------------------- 506
consensus_9857#3      TAGTGTGGTTCA-G-GAGATCGATATAATAACCATACATTCATACTTTTGTCAAAAA--- 390
consensus_9857#0      TAGTGTGGTTCA-G-GAGATCGATATAATAACCATACATTCATACTTTTGTCATTTTTAA 1496
consensus_9857#1      CATTATACCACTGGTGCGACAGAATCGCCAGACCTGGAGGGATACCATCCCTAACGAGAC 962
                       * * *    *  * * **  **      *  *    *                      

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      AAA--------------------------------------------------------- 1499
consensus_9857#1      TGGTAAGGTGAGGACAATTACATCCATAAGCAGCCAGATCATAGGCTACTTTGTTACAGC 1022
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      ------------------------------------------------------------
consensus_9857#1      TACCAGGACAGTGATTAACATTTGAAAGCACTAGAAAAGTCCTCAGTGAACAATTTATTT 1082
                                                                                  

consensus_9857#2      ------------------------------------------------------------
consensus_9857#3      ------------------------------------------------------------
consensus_9857#0      ------------------------------------------------------------
consensus_9857#1      CGTGGAGAAGACCTCCTGTTGCAGCCAAACTGTATTTTGCCCCCTCATAGCGTACATTAA 1142
                                                                                  

consensus_9857#2      ------------------------
consensus_9857#3      ------------------------
consensus_9857#0      ------------------------
consensus_9857#1      CATCATAGAATCAGTTCCCAACTT 1166
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)