cluster # 986

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Oryza sativa
cluster # 986 cluster # 986 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_986#0 length = 765 sequences # 1

consensus_986#1 length = 612 sequences # 1

consensusID : consensus_986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAACCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACCTAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGTAGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAATAACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAACGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACTGGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGTTCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAGAAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATTTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG]

[+] EMBL CB635716             [ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAACCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACCTAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGTAGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAATAACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAACGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACTGGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGTTCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAGAAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATTTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG]




>consensus_986#0
ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAA
CCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACC
TAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGT
AGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAAT
AACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAA
CGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACT
GGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGT
TCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAG
AAAAGGCTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGGT
TCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGCC
AAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCATT
TAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAGAGAGGGCGCGCGGACCGGG
TCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG

consensusID : consensus_986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCAC]

[+] EMBL CB661200             [AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCAC]




>consensus_986#1
AAACATCGGCTTCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGAC
CAACGGAAAATAAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGC
ACAAAAATGGGTTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGA
GTTCAAATGGCCAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCG
AATTTCTTCATTTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGG
CGCGCGGACCGGGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGAC
CGGGTGCACCCGGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGA
GGGCGCGGGCGGCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGG
CCATGCCGGCGCGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGG
CCATAGACGCGGCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGG
TCCACGGCTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_986#0      ACATATTTTGTGGGTTTTGAATAGAGGGGGAGGTGTGTGTCCTATTCCAACATAAGTCAA 60
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      CCATTCCATGGTGTCCAAATGATATGAAAATTCCCAAAGTCTAAAGTTATAAAAACCACC 120
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      TAATGTTGTCCTATTAATCAGCGAAGCATCTACCTAAATCATACTAGTGATGCCACAAGT 180
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      AGAGTGTCCACTAGTTGGGGGTTTTGTTTATCCTAGGGTGAACAAGGTAATAATAGCAAT 240
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      AACAATAATAATAAGGTCATATCAAGGGTAAATAGGCATGGCTACATAAAACAGTGATAA 300
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      CGCGGGAATTTTAAATAAAGCGGTAATGCATTAATTTAAATCAAAATAATTTTATAAACT 360
consensus_986#1      ------------------------------------------------------------
                                                                                 

consensus_986#0      GGGATTCAATATGCTCAAGGATGATGTGACTTGCCTTGCTCGCTTTCCCAAACGACGGGT 420
consensus_986#1      -------------------------------------------------AAACATCGGCT 11
                                                                      ****  *** *

consensus_986#0      TCAACTTCCACGTAGAGCGGATCCTCCGAAGCTGCGGCGTCTACACGATCAACGGAAAAG 480
consensus_986#1      TCAACCTCCATGAAGAGAGGATCTTCCGAAGCTGCAGCGTCTACACGACCAACGGAAAAT 71
                     ***** **** * **** ***** *********** ************ ********** 

consensus_986#0      AAAAGG-CTTTTACTCTAATAAATTCCATATAAAAAGCATTAACAAAGCATAAAAATGGG 539
consensus_986#1      AAAAGGGCTTTTACTCTAATAAACTCCATATAACAAGCAGGAACAAAGCACAAAAATGGG 131
                     ****** **************** ********* *****  ********* *********

consensus_986#0      TTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACGGTCCAATTCCGAGTTCAAATGGC 599
consensus_986#1      TTCTTGACTTCTTAAGGAAAAATTAGAGACTTGAACAGTCCAATTCCGAGTTCAAATGGC 191
                     ************************************ ***********************

consensus_986#0      CAAGTTATGGCCATTTGAAGTTTATATGCTCTTTAAATGGATATTTACGAATTTCTTCAT 659
consensus_986#1      CAAGTTATGGCCATTTGAAGTTTATATACTCTTAAAATAAATATTTGCGAATTTCTTCAT 251
                     *************************** ***** ****  ****** *************

consensus_986#0      TTAAATTTTAATTTAAAATTGAATTATTGCGTCAGCCGAGAG-AGAGGGCGCGCGGACCG 718
consensus_986#1      TTAAATTTTAATTTAAAAAGGGTTTATCGCGTCAGCCGAGGGGAGGGGGCGCGCGGACCG 311
                     ******************  *  **** ************ * ** **************

consensus_986#0      GGTCCACGGGAGTGGGGCCCATGCGTCAGCCTCACGGTCCACGGTGG------------- 765
consensus_986#1      GGTCCATGGGAGTGGGGCCCACGTGGCAGCCTCACGGTCCACGGTGGACCGGGTGCACCC 371
                     ****** ************** * * *********************             

consensus_986#0      ------------------------------------------------------------
consensus_986#1      GGGCTCACACCGGCCGGTGCCGTGGGCCCCACACGTCAGCCGCACCCGAGGGCGCGGGCG 431
                                                                                 

consensus_986#0      ------------------------------------------------------------
consensus_986#1      GCTGACGGCCAGGCCCCACACGGCAGCCACTCGGCGCGCCCGAGGGCGGCCATGCCGGCG 491
                                                                                 

consensus_986#0      ------------------------------------------------------------
consensus_986#1      CGGTCGGCGAGAGGCGGCACGCCCGCGCCACTATGGTCGCCGGCGGCGGCCATAGACGCG 551
                                                                                 

consensus_986#0      ------------------------------------------------------------
consensus_986#1      GCGGAGCAGCGGCCGAGAGAGCGGAGGAAAAGGGGAAAGGAGGCGACGGTCCACGGCTCA 611
                                                                                 

consensus_986#0      -
consensus_986#1      C 612