cluster # 9860

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Oryza sativa
cluster # 9860 cluster # 9860 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9860#0 length = 860 sequences # 6

consensus_9860#1 length = 176 sequences # 1

consensusID : consensus_9860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 860
fasta sequence

                              [GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATGAGATCTCCCCAAAAAAAAGG]

[+] EMBL AK070467             [GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATG                    ]
[+] EMBL AK104410             [ CAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATG                    ]
[+] EMBL AK104671             [      AAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATGAG                  ]
[+] EMBL CA754045             [                   AGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCAC ACTAAGAAGA AACTACTTCTCTGTATAAaa                                                                                                                                                                                                                                             ]
[+] EMBL CB682460             [                              ACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTG                                                              ]
[-] EMBL CB682461             [                                                                                                                          CAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATGAGATCTCCCCAAAAAAAAGG]




>consensus_9860#0
GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTC
TTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACC
ACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCG
TGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAG
TGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCG
CCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGAC
CCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCC
GTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCC
GCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGC
CGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAA
GAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTT
GAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTG
TGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCA
ACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATG
AGATCTCCCCAAAAAAAAGG

consensusID : consensus_9860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence

                              [CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTCTTTGTGTTCATATACCGTGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTGGTATGCCCACCAATGCACTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAAAAAAAAA]

[+] EMBL BI810977             [CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTCTTTGTGTTCATATACCGTGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTGGTATGCCCACCAATGCACTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAAAAAAAAA]




>consensus_9860#1
CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTCTTTGTGTTCATATACCG
TGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTGGTATGCCCACCAATGCA
CTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9860#0      GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTC 60
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      TTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACC 120
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      ACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCG 180
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      TGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAG 240
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      TGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCG 300
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      CCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGAC 360
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      CCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCC 420
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      GTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCC 480
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      GCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGC 540
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      CGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAA 600
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      GAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTT 660
consensus_9860#1      ------------------------------------------------------------
                                                                                  

consensus_9860#0      GAACATGTCTCTGTGTTCATGTAC-GTGTTGGTATATGCA-TAGCTTGAACA--TGTCTC 716
consensus_9860#1      -----------------CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTC 43
                                       ******* *************** **********   ******

consensus_9860#0      TTTGTGTTCATATAC-GTGTTGGTATGTATGCA-TAGCTTGAACA--TGTCTCTGTGTTG 772
consensus_9860#1      TTTGTGTTCATATACCGTGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTG 103
                      *************** ***************** **********   *************

consensus_9860#0      GTATGCCAAC--ATGCA-TCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATA 829
consensus_9860#1      GTATGCCCACCAATGCACTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATA 163
                      ******* **  ***** ******************************************

consensus_9860#0      AATAAGAGATGAGATCTCCCCAAAAAAAAGG 860
consensus_9860#1      AATAAAAAAAAAA------------------ 176
                      ***** * *  *