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Oryza sativa
cluster # 9863 cluster # 9863       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9863#0 length = 2682 sequences # 5  
consensus_9863#1 length = 505 sequences # 1  
consensus_9863#2 length = 453 sequences # 1  

consensusID : consensus_9863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2682
fasta sequence
                              [CTCCCGGATCTCGCGCGCCACGACCCTCCTCCCCCTTCCAGAAGCTTCTCGAAGCTCCGTTCCTCACCACCCCAACCCAATCCCCACTCCCCACTCCCTCCGCGCGGATGAGCGGCGGCGGCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGCCGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAGGCTCTGTTTACCAATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCTTTTAATGGTTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTTGTATCCGGTGAGCTCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAAATTCGTACATTTTGGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATCTATAGAAACAATTCATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGTTAAAGAAGCATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGAGCTTATGCCTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACTGTTGTAGATTCTTTAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCATCAAAATGGATTGAAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAGTACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGATCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGTGGAGGGTTTGGTTCCTATTTACATCAATCCCTCCTCTGGTCAATTTAGTGGAGAAAATATTCGATTAGGATCTCGTGGTGACAGTTACTATGAATACCTATTGAAAGTATGGGTTCAGCAAGAAAGATATCGTGACACTAGTTTGAAGTATCTATTTGAAATGTATACAGAAGCAATGAAAGGGGTCAAGCATCTTCTTGTTCGAAAAACTATTCCAAATGGGCTGGTCTTCGTTGGGGAGCTCCCCTATGGACGAAATAGTGGTTTTAGCCCTAAAATGGATCACCTGGTGTGTTTTCTTCCTGGTACCCTTGCTCTGGGTGCAACGAAGGGTATAACCAAGAAAAAAGCTCTTGAAAATCATTTATTGACTGCGGAAGACATAGACAATCTGCAGCTTGCTGAAGATTTGGCCAAAACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTATTTTCACATTGAGGGTAATTCTGAGGGAGGACCTGATGGTGGGAACAAAAGTTCTCAATATGTTAATGATATCATAATCAAACCTCTGGATCGTCACAATCTTTTACGCCCAGAGACTGTAGAATCACTATTTGTTTTATATAGAATCACAGAGGATCCGAAGTATAGGGAATGGGGTTGGCAGATTTTTCAGGCTTTTGAGAAGTATACAAGAGTTGATTCTGGTGGCTATACTTCATTGGATGATGTCACAAGCTTGCCCCCACCTAGGAGAGACAAAATGGAAACTTTCTTCCTTGGAGAAACACTGAAATACTTGTATTTGCTGTTTGGTGAAAGCAATATTCTTCCATTAGATAAGTATGTATTCAACACAGAGGCCCATCCACTTCCAATCATTCAGTCTGCACAACAGATCTCTCATTCGGTATAGTTTCCAAGTGT--TTTAG-TGGGTGTAGTTCCTCTACTA-TCATGTGA-A-AAGTGTACTA-CCATGAGAAAATTTTACCAAACAGATAAAGTGAGAAAATAGTTACGCAGACAAAATTATTGGGACAATGAGAGAAACATACTAGCCTTATAGATGCACATGCTCCCGTTGCATGAGCTTGAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGCTGCAGTGGCATCATTATTAGAAGCAAGCTCGTGG-ATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAA-ACATACAATTTTGAATTAGCTTGTGATTACACTGACATTTGTCTTCCAAGAAATCTTCAAT-CCTTGTGTCAGACATCCCATCATGTTCACAACTTGCTCCCTGCTTACCTGGTGAGTTCAACTAGATTTGTAAGCTTCTTATCATCTCCAGTTGCTGTTCATTGACAGCATTTTGCATGGTTCATGTTTTTGGCGTGTTTGTGTTATGGTAGTGCTCTACTGTAAGCCTGTAGCAAAATCTCCTAAAAGAACATTGATTTTGAAAATGTCATAATATAGTCAAAGTTCAAGGTGAC]

[+] EMBL AK069043             [CTCCCGGATCTCGCGCGCCACGACCCTCCTCCCCCTTCCAGAAGCTTCTCGAAGCTCCGTTCCTCACCACCCCAACCCAATCCCCACTCCCCACTCCCTCCGCGCGGATGAGCGGCGGCGGCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGCCGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAGGCTCTGTTTACCAATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCTTTTAATGGTTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTTGTATCCGGTGAGCTCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAAATTCGTACATTTTGGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATCTATAGAAACAATTCATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGTTAAAGAAGCATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGAGCTTATGCCTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACTGTTGTAGATTCTTTAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCATCAAAATGGATTGAAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAGTACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGATCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGTGGAGGGTTTGGTTCCTATTTACATCAATCCCTCCTCTGGTCAATTTAGTGGAGAAAATATTCGATTAGGATCTCGTGGTGACAGTTACTATGAATACCTATTGAAAGTATGGGTTCAGCAAGAAAGATATCGTGACACTAGTTTGAAGTATCTATTTGAAATGTATACAGAAGCAATGAAAGGGGTCAAGCATCTTCTTGTTCGAAAAACTATTCCAAATGGGCTGGTCTTCGTTGGGGAGCTCCCCTATGGACGAAATAGTGGTTTTAGCCCTAAAATGGATCACCTGGTGTGTTTTCTTCCTGGTACCCTTGCTCTGGGTGCAACGAAGGGTATAACCAAGAAAAAAGCTCTTGAAAATCATTTATTGACTGCGGAAGACATAGACAATCTGCAGCTTGCTGAAGATTTGGCCAAAACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTATTTTCACATTGAGGGTAATTCTGAGGGAGGACCTGATGGTGGGAACAAAAGTTCTCAATATGTTAATGATATCATAATCAAACCTCTGGATCGTCACAATCTTTTACGCCCAGAGACTGTAGAATCACTATTTGTTTTATATAGAATCACAGAGGATCCGAAGTATAGGGAATGGGGTTGGCAGATTTTTCAGGCTTTTGAGAAGTATACAAGAGTTGATTCTGGTGGCTATACTTCATTGGATGATGTCACAAGCTTGCCCCCACCTAGGAGAGACAAAATGGAAACTTTCTTCCTTGGAGAAACACTGAAATACTTGTATTTGCTGTTTGGTGAAAGCAATATTCTTCCATTAGATAAGTATGTATTCAACACAGAGGCCCATCCACTTCCAATCATTCAGTCTGCACAACAGATCTCTCATTCGGTATAGTTTCCAAGTGT  TTTAG TGGGTGTAGTTCCTCTACTA TCATGTGA A AAGTGTACTA CCATGAGAAAATTTTACCAAACAGATAAAGTGAGAAAATAGTTACGCAGACAAAATTATTGGGACAATGAGAGAAACATACTAGCCTTATAGATGCACATGCTCCCGTTGCATGAGCTTGAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGCTGCAGTGGCATCATTATTAGAAGCAAGCTCGTGG ATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAA ACATACAATTTTGAATTAGCTTGTGATTACACTGACATTTGTCTTCCAAGAAATCTTCAAT CCTTGTGTCAGACATCCCATCATGTTCACAACTTGCTCCCTGCTTACCTGGTGAGTTCAACTAGATTTGTAAGCTTCTTATCATCTCCAGTTGCTGTTCATTGACAGCATTTTGCATGGTTCATGTTTTTGGCGTGTTTGTGTTATGGTAGTGCTCTACTGTAAGCCTGTAGCAAAATCTCCTAAAAGAACATTGATTTTGAAAATGTCATAATATAGTCAAAGTTCAAGGTGAC]
[+] EMBL CF317149             [                                    TCCAGAAGCTTCTCGAAGCTCCGTTCCTCACCACCCCAACCCAATCCCCACTCCCCACTCCCTCCGCGCGGATGAGCGGCGGCGGCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGCCGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAGGCTCTGTTTACCAATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCTTTTAATGGTTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTTGTATCCGGTGAGCTCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAAATTCGTACATTTTGGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATCTATAGGAACAATTCATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGTTAAAGAAGCATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGAGCTTATGCCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB639478             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGTTAAAGAAGCATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGAGCTTATGCCTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACTGTTGTAGATTCTTTAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCATCAAAATGGATTGAAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BQ908771             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgCAAGTGTNCNCTAGCTGGGNGTAGTTCCTCTACTAGTCATGTGANATAAGTGTACTACCCATGAGGAAATTTTACCAAACAGATAAAGTGAGNAAATAGTTACGCAGACTAAATTATTGGGACAATGAGAGAAACATACTAGCCTTATAGATGCACATGCTCCCGTTGCATGAGCTGGAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGCTGCAGTGGCATCATTATTAGAAGCAAGCTCGTGGTATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAATACATACAATTTTGAATTAGCTTGTGATTACACTGACAaaaa                                                                                                                                                                                                                                                                ]
[-] EMBL BU673424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACTA CCATGAGAAAATTTTACCCAACAGATAAAGTGAGAAAATAGTTACGCAGACCAAATTATTGGGACCATGAGAGAAACATACTACCCTTATAGATGCACATGCTCCCGTTGCATGAGCTTGAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGCTGCAGTGGCATCATTATTAGAAGCCAGCTCGTGG ATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAA ACATACCATTTTGAATTAGCTTGTGATTACACTGACATTTGTCTTCCCAGAAATCTTCAATCCCTTGT                                                                                                                                                                                                                                     ]


>consensus_9863#0 CTCCCGGATCTCGCGCGCCACGACCCTCCTCCCCCTTCCAGAAGCTTCTCGAAGCTCCGT TCCTCACCACCCCAACCCAATCCCCACTCCCCACTCCCTCCGCGCGGATGAGCGGCGGCG GCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGCCGCGGCGCCTACA ACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAGGCTCTGTTTACCA ATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCTTTTAATGG TTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTTGTATCCGGTGAGC TCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAAATTCGTACATTTT GGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATCTATAGAAACAATT CATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGTTAAAGAAG CATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGAGCTTATGC CTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACTGTTGTAGATTCTT TAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCATCAAAATGGATTG AAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTA TCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAG GTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTT CAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTT TAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAGTA CCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGATC CAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGTGG AGGGTTTGGTTCCTATTTACATCAATCCCTCCTCTGGTCAATTTAGTGGAGAAAATATTC GATTAGGATCTCGTGGTGACAGTTACTATGAATACCTATTGAAAGTATGGGTTCAGCAAG AAAGATATCGTGACACTAGTTTGAAGTATCTATTTGAAATGTATACAGAAGCAATGAAAG GGGTCAAGCATCTTCTTGTTCGAAAAACTATTCCAAATGGGCTGGTCTTCGTTGGGGAGC TCCCCTATGGACGAAATAGTGGTTTTAGCCCTAAAATGGATCACCTGGTGTGTTTTCTTC CTGGTACCCTTGCTCTGGGTGCAACGAAGGGTATAACCAAGAAAAAAGCTCTTGAAAATC ATTTATTGACTGCGGAAGACATAGACAATCTGCAGCTTGCTGAAGATTTGGCCAAAACTT GTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTATTTTCACA TTGAGGGTAATTCTGAGGGAGGACCTGATGGTGGGAACAAAAGTTCTCAATATGTTAATG ATATCATAATCAAACCTCTGGATCGTCACAATCTTTTACGCCCAGAGACTGTAGAATCAC TATTTGTTTTATATAGAATCACAGAGGATCCGAAGTATAGGGAATGGGGTTGGCAGATTT TTCAGGCTTTTGAGAAGTATACAAGAGTTGATTCTGGTGGCTATACTTCATTGGATGATG TCACAAGCTTGCCCCCACCTAGGAGAGACAAAATGGAAACTTTCTTCCTTGGAGAAACAC TGAAATACTTGTATTTGCTGTTTGGTGAAAGCAATATTCTTCCATTAGATAAGTATGTAT TCAACACAGAGGCCCATCCACTTCCAATCATTCAGTCTGCACAACAGATCTCTCATTCGG TATAGTTTCCAAGTGTTTTAGTGGGTGTAGTTCCTCTACTATCATGTGAAAAGTGTACTA CCATGAGAAAATTTTACCAAACAGATAAAGTGAGAAAATAGTTACGCAGACAAAATTATT GGGACAATGAGAGAAACATACTAGCCTTATAGATGCACATGCTCCCGTTGCATGAGCTTG AAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGCTGCAG TGGCATCATTATTAGAAGCAAGCTCGTGGATGGAGTTATCGTCATAGATTTGGAGATTGT ACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAAACATACAATTTTGA ATTAGCTTGTGATTACACTGACATTTGTCTTCCAAGAAATCTTCAATCCTTGTGTCAGAC ATCCCATCATGTTCACAACTTGCTCCCTGCTTACCTGGTGAGTTCAACTAGATTTGTAAG CTTCTTATCATCTCCAGTTGCTGTTCATTGACAGCATTTTGCATGGTTCATGTTTTTGGC GTGTTTGTGTTATGGTAGTGCTCTACTGTAAGCCTGTAGCAAAATCTCCTAAAAGAACAT TGATTTTGAAAATGTCATAATATAGTCAAAGTTCAAGGTGAC



consensusID : consensus_9863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [TTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAGTACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGATCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGTGGAGGGTTTGGTTCCTATTTACATCAAGTATGCATTGCTTGAACCCTTCTGTGTTTTGGCACTAAATTAAGTTCAGAATATATTGCATTGTCTAACCATCAAAAAAA]

[-] EMBL CF317150             [TTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAGTACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGATCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGTGGAGGGTTTGGTTCCTATTTACATCAAGTATGCATTGCTTGAACCCTTCTGTGTTTTGGCACTAAATTAAGTTCAGAATATATTGCATTGTCTAACCATCAAAAAAA]


>consensus_9863#1 TTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTATCCGTGTCTTGGGAGGGCTT CTTAGTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGAGGTGACTCTGGGATACCAATG ACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTTTCAAAGGACTTGGCAGACAGA TTATTGTTAGCCTTTACATCAAGCCCAACTGCTATACCTTTAAGTGATGTTGTTCTTCGA GATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAGTACCTCTGAGGCTACAACATTG CAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGATCCAAAGTATGACTTAGAGGCA ATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGTGGAGGGTTTGGTTCCTATTTAC ATCAAGTATGCATTGCTTGAACCCTTCTGTGTTTTGGCACTAAATTAAGTTCAGAATATA TTGCATTGTCTAACCATCAAAAAAA



consensusID : consensus_9863#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence
                              [GTCTTCAGGTTCGGGGTAGTAGGTGTTTCCAAGGGTGGTTNATTACGTGGGNGTAGTTCCTCTACTATCAGTGTGAACAAGTGTACTAGCCATTGAGANACAATTTTACCCATATCAGATATATAGTGAGAATAACTACGTTATCGCAGGACAANAATTATTGGGANCAATGAGAGACAACCACNACTAGCCGTTATAGATGCACATGCTCCCGGTGGCAGTGAGCCTTGAAGCAGCAGTCAGAGCCGGTTCGTNGGGTAGCCATACCGTCATNGGAGTTGGTCAGCCTTTGAAGCCTGCAGTGGCATCACGTTAGTTAGAAGCAAGCTCGTGGATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACNACTCTGATCTGCTGAAAACATACAATTTCGAATTAGCTTGTGATTACACNGAAAAAAAA]

[+] EMBL BQ907981             [GTCTTCAGGTTCGGGGTAGTAGGTGTTTCCAAGGGTGGTTNATTACGTGGGNGTAGTTCCTCTACTATCAGTGTGAACAAGTGTACTAGCCATTGAGANACAATTTTACCCATATCAGATATATAGTGAGAATAACTACGTTATCGCAGGACAANAATTATTGGGANCAATGAGAGACAACCACNACTAGCCGTTATAGATGCACATGCTCCCGGTGGCAGTGAGCCTTGAAGCAGCAGTCAGAGCCGGTTCGTNGGGTAGCCATACCGTCATNGGAGTTGGTCAGCCTTTGAAGCCTGCAGTGGCATCACGTTAGTTAGAAGCAAGCTCGTGGATGGAGTTATCGTCATAGATTTGGAGATTGTACTTGTATTTATGGGAAGGTCATGAAACNACTCTGATCTGCTGAAAACATACAATTTCGAATTAGCTTGTGATTACACNGAAAAAAAA]


>consensus_9863#2 GTCTTCAGGTTCGGGGTAGTAGGTGTTTCCAAGGGTGGTTNATTACGTGGGNGTAGTTCC TCTACTATCAGTGTGAACAAGTGTACTAGCCATTGAGANACAATTTTACCCATATCAGAT ATATAGTGAGAATAACTACGTTATCGCAGGACAANAATTATTGGGANCAATGAGAGACAA CCACNACTAGCCGTTATAGATGCACATGCTCCCGGTGGCAGTGAGCCTTGAAGCAGCAGT CAGAGCCGGTTCGTNGGGTAGCCATACCGTCATNGGAGTTGGTCAGCCTTTGAAGCCTGC AGTGGCATCACGTTAGTTAGAAGCAAGCTCGTGGATGGAGTTATCGTCATAGATTTGGAG ATTGTACTTGTATTTATGGGAAGGTCATGAAACNACTCTGATCTGCTGAAAACATACAAT TTCGAATTAGCTTGTGATTACACNGAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9863#0      CTCCCGGATCTCGCGCGCCACGACCCTCCTCCCCCTTCCAGAAGCTTCTCGAAGCTCCGT 60
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TCCTCACCACCCCAACCCAATCCCCACTCCCCACTCCCTCCGCGCGGATGAGCGGCGGCG 120
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGCCGCGGCGCCTACA 180
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      ACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAGGCTCTGTTTACCA 240
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      ATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCTTTTAATGG 300
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTTGTATCCGGTGAGC 360
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAAATTCGTACATTTT 420
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATCTATAGAAACAATT 480
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      CATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGTTAAAGAAG 540
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      CATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGAGCTTATGC 600
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      CTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACTGTTGTAGATTCTT 660
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCATCAAAATGGATTG 720
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      AAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTA 780
consensus_9863#1      --------------------TTAAGTGAGAAAGGGCAGGTCAATCTATTTGAAACTACTA 40
consensus_9863#2      --------------------------------------GTCT-TCAGGTTCGGGGTAGTA 21
                                                            ***  **   **     ** **

consensus_9863#0      TCCGTGTCTTGGGAGGGCTTCTTA-GTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGA 839
consensus_9863#1      TCCGTGTCTTGGGAGGGCTTCTTA-GTGCCTATCACTTGAGTGGTGGTGACAAAGCAAGA 99
consensus_9863#2      GGTGTTTCCAAGGGTGGTTNATTACGTGGGNGTAGTTC---CTCTACTATCAGTGTGAAC 78
                         ** **   **  ** *  *** ***    *   *       *  *  **  *  *  

consensus_9863#0      GGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTT 899
consensus_9863#1      GGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTTGGAAGTT 159
consensus_9863#2      AAGTGTACTAG----CCATTGAGANACAATTTTACCCATATCAGATATATAGTGAGAATA 134
                             ** *    *** *** *   **     *  **        * *  **  * * 

consensus_9863#0      TCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTA-TACC 958
consensus_9863#1      TCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGCTA-TACC 218
consensus_9863#2      ACTACGTTATCGCAGGACA-ANAATTATTGGGANCAATGAGAGA--CAACCACNACTAGC 191
                       * * *   * *   **** *  *** ** *     *    *    ****  * * ** *

consensus_9863#0      TTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAG 1018
consensus_9863#1      TTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTTAAGCAG 278
consensus_9863#2      CGTTATAGATGCACATGCTCCCGGTGGCAGTGAGCCTTGAAGC---AGCAGTCAGAGCCG 248
                        * *  ****    *  **  * * * * **  * *  *  *       **   *** *

consensus_9863#0      TACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGA 1078
consensus_9863#1      TACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATCAGGAGA 338
consensus_9863#2      -GTTCGTNGGGTAGCCATACCGTCATNGGAGTTGGTCAGCCTTTGAA----GCCTGCAGT 303
                            *  **   * * *  *     *****       **** * *      * * ** 

consensus_9863#0      TCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGT 1138
consensus_9863#1      TCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCCAACAGT 398
consensus_9863#2      GGCATCACGTTAGTTAGAAGCAAGCTCGTGGATGGAGT-TAT-------CGTCATAGATT 355
                        **     * * ***** ****       * * ***  ***       *  *  * * *

consensus_9863#0      GGAGGGTTTGGTTCCTATTTACATCAA---TCCCTCCTCTGGTCAATTTAGTGGAGAAAA 1195
consensus_9863#1      GGAGGGTTTGGTTCCTATTTACATCAAGTATGCATTGCTTGAACCCTTCTGTGTTTTGG- 457
consensus_9863#2      TGGAGATTGTACTTGTATTTATGGGAA------GGTCATGAAACNACTCTGATCTGCTGA 409
                       *  * **    *  ******    **                *   *  *         

consensus_9863#0      TATTCGATTAGGATCTCGTGGTGACAGTTACTATGAATACCTATTGAAAGTATGGGTTCA 1255
consensus_9863#1      CACTAAATTAAGTTC----AGAATATATTGCATTGTCTAACCATCAAAAAAA-------- 505
consensus_9863#2      AAACATAC-AATTTC----GAATTAGCTTG---TGATTACACNGAAAAAAAA-------- 453
                       *    *  *   **            **    **  **       ***  *        

consensus_9863#0      GCAAGAAAGATATCGTGACACTAGTTTGAAGTATCTATTTGAAATGTATACAGAAGCAAT 1315
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GAAAGGGGTCAAGCATCTTCTTGTTCGAAAAACTATTCCAAATGGGCTGGTCTTCGTTGG 1375
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GGAGCTCCCCTATGGACGAAATAGTGGTTTTAGCCCTAAAATGGATCACCTGGTGTGTTT 1435
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TCTTCCTGGTACCCTTGCTCTGGGTGCAACGAAGGGTATAACCAAGAAAAAAGCTCTTGA 1495
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      AAATCATTTATTGACTGCGGAAGACATAGACAATCTGCAGCTTGCTGAAGATTTGGCCAA 1555
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      AACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTATTT 1615
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TCACATTGAGGGTAATTCTGAGGGAGGACCTGATGGTGGGAACAAAAGTTCTCAATATGT 1675
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TAATGATATCATAATCAAACCTCTGGATCGTCACAATCTTTTACGCCCAGAGACTGTAGA 1735
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      ATCACTATTTGTTTTATATAGAATCACAGAGGATCCGAAGTATAGGGAATGGGGTTGGCA 1795
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GATTTTTCAGGCTTTTGAGAAGTATACAAGAGTTGATTCTGGTGGCTATACTTCATTGGA 1855
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TGATGTCACAAGCTTGCCCCCACCTAGGAGAGACAAAATGGAAACTTTCTTCCTTGGAGA 1915
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      AACACTGAAATACTTGTATTTGCTGTTTGGTGAAAGCAATATTCTTCCATTAGATAAGTA 1975
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TGTATTCAACACAGAGGCCCATCCACTTCCAATCATTCAGTCTGCACAACAGATCTCTCA 2035
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TTCGGTATAGTTTCCAAGTGTTTTAGTGGGTGTAGTTCCTCTACTATCATGTGAAAAGTG 2095
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TACTACCATGAGAAAATTTTACCAAACAGATAAAGTGAGAAAATAGTTACGCAGACAAAA 2155
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TTATTGGGACAATGAGAGAAACATACTAGCCTTATAGATGCACATGCTCCCGTTGCATGA 2215
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GCTTGAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGAAGC 2275
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TGCAGTGGCATCATTATTAGAAGCAAGCTCGTGGATGGAGTTATCGTCATAGATTTGGAG 2335
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      ATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAAACATACAAT 2395
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TTTGAATTAGCTTGTGATTACACTGACATTTGTCTTCCAAGAAATCTTCAATCCTTGTGT 2455
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      CAGACATCCCATCATGTTCACAACTTGCTCCCTGCTTACCTGGTGAGTTCAACTAGATTT 2515
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      GTAAGCTTCTTATCATCTCCAGTTGCTGTTCATTGACAGCATTTTGCATGGTTCATGTTT 2575
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      TTGGCGTGTTTGTGTTATGGTAGTGCTCTACTGTAAGCCTGTAGCAAAATCTCCTAAAAG 2635
consensus_9863#1      ------------------------------------------------------------
consensus_9863#2      ------------------------------------------------------------
                                                                                  

consensus_9863#0      AACATTGATTTTGAAAATGTCATAATATAGTCAAAGTTCAAGGTGAC 2682
consensus_9863#1      -----------------------------------------------
consensus_9863#2      -----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)