These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 920 fasta sequence [ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCACGGAGATCG-CGGA-CATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGG-GCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCT-CGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTTATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGATTAATTAATAATGTATTGTCG] [+] EMBL AK071589 [ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCACGGAGATCG CGGA CATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGG GCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCT CGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTTATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGATTAATTAATAATGTATTGTCG] [+] EMBL AU085931 [ gnacaaagaGGCCCNCGGAGATCGCCGGANCATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGCCCCCGTTGTTAACTCCCTCCGCNGNAACCCCAAGGCCTGGCTCCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTTATCGGCGCTCTCGCCTCCGCCGNC NNTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATAaaaa ] [+] EMBL CB623348 [ AGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGAACTTTTGCTGCGTGCTTGTAGTGTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTATATTCGGTTGGGATTAATTAATAATGTATTGTCG] consensusID : consensus_9865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 748 fasta sequence [AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCGGCCTGTCCGGCGCCAACG-CCCCTCCG-CCTCGTCCTCACCGCCGGCCTCG-CGANGTCGCCGCC-GNGCCATCTCCATGGG-CTCGGAGGGTATCTGGCGGCGAAGAGC-NCGCCGA-CACTAACACCGC-AACTGAAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAGCCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTT] [+] EMBL C73082 [AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCGGCCTGTCCGGCGCCAACG CCCCTCCG CCTCGTCCTCACCGCCGGCCTCG CGANGTCGCCGCC GNGCCATCTCCATGGG CTCGGAGGGTATCTGGCGGCGAAGAGC NCGCCGA CACTAACACCGC AACTGA ] [+] EMBL CB617840 [ GCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGGACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGCCGCCGGCCTGTCCGGCGCCAACGCCCCCTCCGCCCTCGTCCTCACCGCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAGCCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTT] consensusID : consensus_9865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 192 fasta sequence [AAAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCCCATGTACACGAGTGTAATCCCTCAAAAAAAAAAAAA] [-] EMBL CF330003 [AAAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCCCATGTACACGAGTGTAATCCCTCAAAAAAAAAAAAA] [+] EMBL CF330004 [ TGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATAAGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9865#0 ACATCGATCACAGAAAGCTAAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAAC 60 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 CAAGCTTAGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAG 120 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 CTTATTAGCTAAGCAGTAGCAGCAGCAGAAGATCGAAGATGGTGAAGGAGTTCGTGCAGG 180 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 ACGAGGAGAAGCAGCGGCTGCTGCTGGACGAGCACACCGAGAAGCACTTCACCGCCGGCG 240 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 AGGTGGTCCACGGAGATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTAT 300 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 GGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAG 360 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 TTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATC 420 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 GCGCTGGCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACG 480 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 GCCGACCGAGCCATGGCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGC 540 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 TATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCTTCCAGACCGCTGTT 600 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 ATCGGCGCTCTCGCCTCCGCCGCCGCCTTCGGCATGGCCAAGGCCGTGCAGTCCATCTAA 660 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ------------------------------------------------------------ consensus_9865#0 GTACTGTAGCCGGAGCTCCGGCTGCAGGC---ATCCAAGTAAATGTAATTAATTTAGC-- 715 consensus_9865#2 -----------AAAGCTCCGGCTGCAGGC---ATCCAAGTAAATGTAATTAATTTAGC-- 44 consensus_9865#1 ------------AAGCTAAAGTGCTAAACTAAGCACGAGAAAATCTAATCAACCAAGCTT 48 **** * * * * ** **** **** ** *** consensus_9865#0 AGATCCAATAAGTA-TTGCAGAAATGTATGTA---TAAGTATTTATGTAC--GTTTGCT- 768 consensus_9865#2 AGATCCAATAAGTA-TTGCAGAAATGTATGTA---TAAGTATTTATGTAC--GTTTGCT- 97 consensus_9865#1 AGATTAGATCATTAGCTATATATAGCTAGGCGATTTAATCATCCACGAGCTAGCTTATTA 108 **** ** * ** * * * * ** * *** ** * * * * ** * consensus_9865#0 GCGTGCTTGTAGT-GTATTAGATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTAC 827 consensus_9865#2 GCGTGCTTGTAGT-GTATTATATGTTCTGGAGGTGTATCCGTAGTTAGCCCTAAGTGTCC 156 consensus_9865#1 GCTAAGCAGTAGCAGCAGCAGAAGATC-GAAGATGGTGAAGGAGTTCGTGCAGGACGAGG 167 ** **** * * * * * ** * ** ** * **** * * * consensus_9865#0 CATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTTAT 887 consensus_9865#2 CATGTACACGAGTGTAATCCCTCAAAAAAAAAAAAA------------------------ 192 consensus_9865#1 AGAAGCAGCGGCTGCTNTGGGACGAGCACACCGAGAAGCACTTCACCGCCGGCGAGGTGG 227 ** ** * * consensus_9865#0 ATTCGGTTGGGATTAATTAATAATGTATTGTCG--------------------------- 920 consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 TCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTGCCGTTCGCCCTCGNCGCCG 287 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 GCCTGTCCGGCGCCAACGCCCCTCCGCCTCGTCCTCACCGCCGGCCTCGCGANGTCGCCG 347 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 CCGNGCCATCTCCATGGGCTCGGAGGGTATCTGGCGGCGAAGAGCNCGCCGACACTAACA 407 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 CCGCAACTGAAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAGAGGCCGCGGAG 467 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 ATCGCGGACATACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAAC 527 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 TCCCTCCGCAGCAACCCCAAGGCCTGGCTCGAATTCATGATGAAGTTTGAGTTGGGACTG 587 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 GAGAAGCCGGAGCCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTGGCTTATGTG 647 consensus_9865#0 ------------------------------------------------------------ consensus_9865#2 ------------------------------------------------------------ consensus_9865#1 GTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATG 707 consensus_9865#0 ----------------------------------------- consensus_9865#2 ----------------------------------------- consensus_9865#1 GCCACCTCGGTCGTCGTCACGCTCGCCGCACTTCTCTTCTT 748 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||