cluster # 9867

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9867 cluster # 9867 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9867#0 length = 958 sequences # 5

consensus_9867#1 length = 526 sequences # 1
consensus_9867#2 length = 371 sequences # 1

consensusID : consensus_9867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 958
fasta sequence

                              [GCAAATTGCAGCGCAGCATCCAT-CCATCCCATC-TTCCATCCTGGGGGTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTCCTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGACGACGCCTCCCTCACCCGCCTCGCCCTCGCCGCCACGCCCACCACCGCCCTCGCCTACAACCTCTCCCTCGCCCTCACCTTCCGCAACCGCAACTGGGCCATGTCCATGAAGAACGTCGAGCCGCTCGAGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCATCCAGCTCGCCGACAAGGGCGCCAAGCAGGGGCCCAAGAAGACGGTGGTGTACAGGCTCTCCTCCGGCAGCGACGCTGCCGCGGCGCCCGGCCTGGGCAACGCCGGCGTCGCCGAGTTCAAGAAGGAGAACGCCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAGCTACACGGCGCGGATCACCAAGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCTCGCGCCGCCGGGGCAGGAGCCGGCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCAAGGCCGAGAAGAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATCTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAGTTTGGAGGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAAAAAAAA]

[+] EMBL CF337814             [GCAAATTGCAGCGCAGCATCCAT CCATCCCATCTTTCCATCCTGGGGGTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTCCTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGACGACGCCTCCCTCACCCGCCTCGCCCTCGCCGCCACGCCCACCACCGCCCTCGCCTACAACCTCTCCCTCGCCCTCACCTTCCGCAACCGCAACTGGGCCATGTCCATGAAGAACGTCGAGCCGCTCGAGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCATCCAGCTCGCCGACAAGGGCGCCAAGCAGGGGCCCAAGAAGACGGTGGTGTACAGGCTCTCCTCCGGCAGCGACGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF337704             [GCAAATTGCAGCGCAGCATCCATCCCATCCCATC TTTCCTCCTGGGGGTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTCCTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGACGACGCCTCCCTCACCCGCCTCGCCCTCGCCGCCACGCCCACCACCGCCCTCGCCTACAACCTCTCCCTCGCCCTCACCTTCCGCAACCGCAACTGGGCCATGTCCATGAAGAACGTCGAGCCGCTCGAGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCATCCAGCTCGCCGACAAGGGCGCCAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB668916             [                                    cCCTTCATGGGGGTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGTTGGTGCCTCCTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGACGACGCCTCCCTCACCCGCCTCGCCCTCGCCGCCACGCCCACCACCGCCCTCGCCTACAACCTCTCCCTCGCCCTCACCTTCCGCAACCGCAACTGGGCCATGTCCATGAAGAACGTCGAGCCGCTCGAGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCATCCAGCTCGCCGACAAGGGCGCCAAGCAGGGGCCCAAGAAGACGGTGGTGTACAGGCTCTCCTCCGGCAGCGACGCTGCCGCGGCGCCCGGCCTGGGCAACGCCGGCGTCGCCGAGTTCAAGAAGGAGAACGCCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAGCTACACGGCGCGGATCACCAAGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCTCGCGCCGCCGGGGCATGAGCCGGCGGCGGTGGTGTTCCATAACGTCAAGTGCAAGC                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF337705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGAAGGAGAACGCCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAGCTACACGGCGCGGATCACCAAGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCTCGCGCCGCCGGGGCAGGAGCCGGCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCAAGGCCGAGAAGAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATCTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAGTTTGGAGGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAAAAAAAA]
[-] EMBL CF337815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGAGAACGCCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAGCTACACGGCGCGGATCACCAAGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCTCGCGCCGCCGGGGCAGGAGCCGGCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCAAGGCCGAGAAGAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATCTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAGTTTGGAGGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAAAAAAAA]




>consensus_9867#0
GCAAATTGCAGCGCAGCATCCATCCATCCCATCTTCCATCCTGGGGGTGTTCGACGATGG
CTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTCCTCTGCATCGCCAT
CCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCC
CTCCATCACCGTCGACGACGCCTCCCTCACCCGCCTCGCCCTCGCCGCCACGCCCACCAC
CGCCCTCGCCTACAACCTCTCCCTCGCCCTCACCTTCCGCAACCGCAACTGGGCCATGTC
CATGAAGAACGTCGAGCCGCTCGAGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCG
CATCCAGCTCGCCGACAAGGGCGCCAAGCAGGGGCCCAAGAAGACGGTGGTGTACAGGCT
CTCCTCCGGCAGCGACGCTGCCGCGGCGCCCGGCCTGGGCAACGCCGGCGTCGCCGAGTT
CAAGAAGGAGAACGCCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAG
CTACACGGCGCGGATCACCAAGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCT
CGCGCCGCCGGGGCAGGAGCCGGCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGC
CAAGGCCGAGAAGAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTT
AATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGT
GCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATCTAATGTGCG
GTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAG
TTTGGAGGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAAAAAAAA

consensusID : consensus_9867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [CCGCCAAGGTGAGCTACCCGGCGCGGATCCACAAGGGCAAAATTAAGGCGACGTGCAAGTCCAAATTCCACTTTCGCCCCCGGGGCAAGAACCCGCGGCGGTGGTGTTCCACAAGAGTCCAAGGCCAGGTTTCCCAAGCCCAGGAAAAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATTTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAGTTTGGAAGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAGAATCTTTTCTTTACGATTTTGTATATTGATTCATGTTTAATTGGGATTTAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]

[-] EMBL AW155618             [CCGCCAAGGTGAGCTACCCGGCGCGGATCCACAAGGGCAAAATTAAGGCGACGTGCAAGTCCAAATTCCACTTTCGCCCCCGGGGCAAGAACCCGCGGCGGTGGTGTTCCACAAGAGTCCAAGGCCAGGTTTCCCAAGCCCAGGAAAAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATTTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAGTTTGGAAGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAGAATCTTTTCTTTACGATTTTGTATATTGATTCATGTTTAATTGGGATTTAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]




>consensus_9867#1
CCGCCAAGGTGAGCTACCCGGCGCGGATCCACAAGGGCAAAATTAAGGCGACGTGCAAGT
CCAAATTCCACTTTCGCCCCCGGGGCAAGAACCCGCGGCGGTGGTGTTCCACAAGAGTCC
AAGGCCAGGTTTCCCAAGCCCAGGAAAAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTT
GTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGT
GGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTAT
TAATTTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCT
AAGCTAGCCGTTAGTTTGGAAGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATTAC
TCCTAGAATCTTTTCTTTACGATTTTGTATATTGATTCATGTTTAATTGGGATTTAAAAT
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC

consensusID : consensus_9867#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [TCCAATTCACAAGCAAATTGCAGCGCAGATCCATCCCATCCCATCTTTCCATCCATGGGGGTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTCCTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGACGACGGCTCCCTCACCCGCCTCGGCCTCGNCGGCACGGCCACCACCGGCCTCGGCTACAAACCTCTTCCCTTCGGCCTTCANCTTTCGGAAANCGNAAATTGGGGCATTGTCCATTGAAGGAACGGTCGAGGCCGTTTGAGGGCCGGCTTAAAGGTTTGGAC]

[+] EMBL OSS11324A            [TCCAATTCACAAGCAAATTGCAGCGCAGATCCATCCCATCCCATCTTTCCATCCATGGGGGTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTCCTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGACGACGGCTCCCTCACCCGCCTCGGCCTCGNCGGCACGGCCACCACCGGCCTCGGCTACAAACCTCTTCCCTTCGGCCTTCANCTTTCGGAAANCGNAAATTGGGGCATTGTCCATTGAAGGAACGGTCGAGGCCGTTTGAGGGCCGGCTTAAAGGTTTGGAC]




>consensus_9867#2
TCCAATTCACAAGCAAATTGCAGCGCAGATCCATCCCATCCCATCTTTCCATCCATGGGG
GTGTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGGACTTCTGCTGGTGCCTC
CTCTGCATCGCCATCCTCCTCGCCATCGCCCTCATCGTCGTCCTCGTCGTCGCCTTCGGC
TTCGTCGTCCAGCCCTCCATCACCGTCGACGACGGCTCCCTCACCCGCCTCGGCCTCGNC
GGCACGGCCACCACCGGCCTCGGCTACAAACCTCTTCCCTTCGGCCTTCANCTTTCGGAA
ANCGNAAATTGGGGCATTGTCCATTGAAGGAACGGTCGAGGCCGTTTGAGGGCCGGCTTA
AAGGTTTGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9867#0      ------------------------------------------------------------
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      CCGCCAAGGTGAGCTACCCGGCGCGGATCCACAAGGGCAAAATTAAGGCGACGTGCAAGT 60
                                                                                  

consensus_9867#0      ------------------------------------------------------------
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      CCAAATTCCACTTTCGCCCCCGGGGCAAGAACCCGCGGCGGTGGTGTTCCACAAGAGTCC 120
                                                                                  

consensus_9867#0      ------------------------GCAAATTGC-AGCGCAGCATCCATCC-ATC-CCATC 33
consensus_9867#2      ------------TCCAATTCACAAGCAAATTGC-AGCGCAG-ATCCATCCCATC-CCATC 45
consensus_9867#1      AAGGCCAGGTTTCCCAAGCCCAGGAAAAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTT 180
                                                *** *** **   **   * *           * 

consensus_9867#0      TT-CCATCC-TGGGGGT--GTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGG 89
consensus_9867#2      TTTCCATCCATGGGGGT--GTTCGACGATGGCTGCGGCGAGTGCTGCTCCAGCTGGAAGG 103
consensus_9867#1      GTTGCAATTGTGTTAATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGT 240
                       *  **    **    *   ** *   **   ***         *     *  ** *** 

consensus_9867#0      ACT--TCTGCTGGTGCCTCCTCTGCATCGCC---ATCCTCCTCGCCATCGCCCTCATCGT 144
consensus_9867#2      ACT--TCTGCTGGTGCCTCCTCTGCATCGCC---ATCCTCCTCGCCATCGCCCTCATCGT 158
consensus_9867#1      GGTGATTGTTTAGTGCTACTTGTGTATTGTGTGAGTGATGTCTTTTCCTGCACAAAGTAT 300
                        *  *    * ****  * * ** ** *      *  *          ** *  *   *

consensus_9867#0      CGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGA-CGACGCCT 203
consensus_9867#2      CGTCCTCGTCGTCGCCTTCGGCTTCGTCGTCCAGCCCTCCATCACCGTCGA-CGACGGCT 217
consensus_9867#1      TAATTTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTGACAGCT 360
                           *  *   **  ** *  *  **     ***  * *    * *  **  ***  **

consensus_9867#0      CCCTCACCCGCCTCGCCCTCGCCGCCACGCCCACCACCGCCCTCGC-CTACAA-CCTCTC 261
consensus_9867#2      CCCTCACCCGCCTCGGCCTCGNCGGCACGGCCACCACCGGCCTCGG-CTACAAACCTCTT 276
consensus_9867#1      AAGCTAGCCG--TTAGTTTGGAAGGTTGTTGTTTTATTATTGTTGGACCAAAAGTGTATT 418
                           * ***  *     * *  *           *      * *  * * **   * * 

consensus_9867#0      -CCTC---GCCCTCACCTTCCGCAA-CCGCAACT--GGGCCATGTCCATGAAGAACGTCG 314
consensus_9867#2      -CCCTTCGGCCTTCANCTTTCGGAAANCGNAAATTGGGGCATTGTCCATTGAA------G 329
consensus_9867#1      ACTCCTAGAATCTTTTCTTTACGATTTTGTATATTGATTCATGTTTAATTGGGA-----T 473
                       *          *   ***    *    * *  *     *    *  **           

consensus_9867#0      AGCCGCTCGAGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCATCCAGCTCGCCG 374
consensus_9867#2      GAACGGTCGAGGCCGTTTG-AGGGCCGGC--TTAAAGGTTTGGAC--------------- 371
consensus_9867#1      TTAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC------- 526
                            ** *          *            *    *     *               

consensus_9867#0      ACAAGGGCGCCAAGCAGGGGCCCAAGAAGACGGTGGTGTACAGGCTCTCCTCCGGCAGCG 434
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      ACGCTGCCGCGGCGCCCGGCCTGGGCAACGCCGGCGTCGCCGAGTTCAAGAAGGAGAACG 494
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      CCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAGCTACACGGCGCGGA 554
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      TCACCAAGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCTCGCGCCGCCGGGGC 614
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      AGGAGCCGGCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCAAGGCCGAGAAGA 674
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      ACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTTAATTAATTTGGATA 734
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      TTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATT 794
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      GTGTGAGTGATGTCTTTTCCTGCACAAAGTATTAATCTAATGTGCGGTTTAGTTTGGGTT 854
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      AATTAGCTGTTCTAGTCAGGGGAGTGACAGCTAAGCTAGCCGTTAGTTTGGAGGGTTGTT 914
consensus_9867#2      ------------------------------------------------------------
consensus_9867#1      ------------------------------------------------------------
                                                                                  

consensus_9867#0      GTTTTATTATTGTTGGACCAAAAGTGTATTACTCCTAAAAAAAA 958
consensus_9867#2      --------------------------------------------
consensus_9867#1      --------------------------------------------