These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1581 fasta sequence [TAGACGAGGAGGAGAAGACGCCGCCGCCATCTTCGCGGCCGCCGGAGAGCAGCCAGCAGCGGGGTGCGGGCGGGCGCGGGCGCGACGCGCGT-GGCGCGGGTGGAGCTCGGAAGCAG-GCGCAGCCTCCACGGGCGCAG-GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC-GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA-GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGCCGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAATCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTTTGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCGTCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGTCAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCA-ACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCGCCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTTAGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGAATCTGGTGAATGCTGTATAATCCTTGCTCCTCAAAAAGGAA] [+] EMBL CB665399 [TAGACGAGGAGGAGAAGACGCCGCCGCCATCTTCGCGGCCGCCGGAGAGCAGCCAGCAGCGGGGTGCGGGCGGGCGCGGGCGCGACGCGCGT GGCGCGGGTGGAGCTCGGAAGCAG GCGCAGCCTCCACGGGCGCAG GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGCCGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAATCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTTTGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCGTCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGTCAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCCATT ] [+] EMBL AK108028 [ GCCGCCGGAGAGCAGCCAGCAGCGGGGTGCGGGCGGGCGCGGGCGCGACGCGCGT GGCGCGGGTGGAGCTCGGAAGCAG GCGCAGCCTCCACGGGCGCAG GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGCCGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAATCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTTTGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCGTCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGTCAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCA ACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCGCCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTTAGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGA ] [+] EMBL OSC107051 [ GCGGGCGCGACG G GTNGGCG GGATGGAGCTCGGAAGCAG GCGCA CTCCACGGGCGCAG GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAA NTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGC ] [-] EMBL BI809359 [ CGCGACGCGCGT TGCGCGGGTGGAGCTCGGAAGCAGTGCGCAGCCTCCACGGGCGCAGTGCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGG GGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGGTTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATCTGAACCCTCCCTCGTCAGGTACAATGAATTTGATCAG CCATCTGCAGGAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGG CTGCACATC ] [-] EMBL CB665400 [ AAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCA ACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCGCCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTTAGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAA ] [-] EMBL CB665035 [ CGCATGCAGGTGAAAGGTGTTCGTCATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATATCAAAGATGCAGATCTCCGTGCTCGTGGTATCCACACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGTCTTGCAGGAAGTTGATGATCCCCTTGAAGAAGAGGAGATTGATGCTGCTCCTGAGAGAGAAGAGTACTTGTCATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGTCGACGAAGATGACACCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAACGATGTGGAGATTTTTGTGATTGGTTACCCTCCGACGATGACAACATAGATCTGTTAGCATCCCCCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTCTATCGGAAAAATGTTCGAGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGAATCTGGTGAATGCTGTATAATCCTTGCTCCTCAAAAAGGAA] consensusID : consensus_9868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [TNTGTTAGCATCCCCCATTGNGCATCCGTGACAATCAGATCCCAGCCCCTTTAGGTTTNTGCTTNAGGANAANATGATCTCTTTTTTTTTTNTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACCCGATGAGAATAGTTTTGGAGAACTGGTGAATGNGTATAATCCTTGCNCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181206 [TNTGTTAGCATCCCCCATTGNGCATCCGTGACAATCAGATCCCAGCCCCTTTAGGTTTNTGCTTNAGGANAANATGATCTCTTTTTTTTTTNTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACCCGATGAGAATAGTTTTGGAGAACTGGTGAATGNGTATAATCCTTGCNCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9868#0 TAGACGAGGAGGAGAAGACGCCGCCGCCATCTTCGCGGCCGCCGGAGAGCAGCCAGCAGC 60 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 GGGGTGCGGGCGGGCGCGGGCGCGACGCGCGTGGCGCGGGTGGAGCTCGGAAGCAGGCGC 120 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 AGCCTCCACGGGCGCAGGCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAG 180 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 GTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTT 240 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 GTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATCGACCC 300 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 CTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCAGAATCTGCAATGTTACTCT 360 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 GAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGC 420 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 CGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAA 480 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTT 540 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCG 600 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGT 660 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 CAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCT 720 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAA 780 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGG 840 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 CTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTC 900 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTT 960 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCAACCTCCGAAAATCGATATCAA 1020 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 TGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCG 1080 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 CCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCA 1140 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 AGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGC 1200 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 CCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTC 1260 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 ATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTT 1320 consensus_9868#1 ------------------------------------------------------------ consensus_9868#0 GAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTT 1380 consensus_9868#1 ------------------------------------------------------TNTGTT 6 * **** consensus_9868#0 AGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGA 1440 consensus_9868#1 AGCATCCCCCATTGNGCATCCGTGACAATCAGATCCCAGCCCCTTTAGGTTTNTGCTTNA 66 ******* ****** ************************* *** ******* ***** * consensus_9868#0 GGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCG 1500 consensus_9868#1 GGANAANATGATCTCTTTTTTTTTTNTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCG 126 *** ** ****************** ********************************** consensus_9868#0 AGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGAATCTGGTGAATGCTGTATAA 1560 consensus_9868#1 AGCTAATCATGAATTAACCCGATGAGAATAGTTTTGGAGAA-CTGGTGAATGN-GTATAA 184 ****************** ********************** ********** ****** consensus_9868#0 TCCTTGCTCCTCAAAAAGGAA------------------------------------- 1581 consensus_9868#1 TCCTTGCNCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242 ******* *** ***** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||