These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3338 fasta sequence [CTAGCCTCCCTAAAACGAAAAAAAAAGGAAAAAAAAAGAAAAAAAAAAACTGCGGCGAGCCGGAGACGTGGCTCCCCGACTCCTCGCGCGCGCGGCCGGCGGCGAGAAGGGCGGCGGCGGCGGCGGGGAAGGCCATCCTCCCCTCATGAGCGGCGTGGCCTCCTCGCGCGCGCGTCGGGGGAGCAGGCAGGTCTGGAGGGGCGACGCCGCCGACGACATCCTTCCGTCTCGGTTCGGATCGGATTGAAGGAATGCCATGAGGAACCACTGAGGATTTATTGGTGGTAATGGAGAATGATCATGGAGATCTAGATGATGTGGGATCGGGGTGGCTTGAAGTGAAAAAAAAACACCGATCCAGCTCAAAATTCACACTGCAGAGGTCTTCAGGAGGTTCCAATGATAATAAAATTTCAAACTCGTCCTCACAATCTCAGACCAACTTTGGCAGTGATAGTGCAAAGTGGTGCGACAGGTTACAATGCCCACCTCAGATCACAAAGGTTAATGTTTGCGTTAATGAACCGGGTAGCGTAGTCACGATGGTTGTTCATGATGAAGAATGTGCTCATGCAGATGTTACCAACCTGAAGAGTGAATTAAGTGTTTCAGACTTGGAGCATGCAATAGAAAAACCTAAAAAACTGCTAGTGACTGAAGAAATAAGTGAACCTCCCAACGTTGGTAAGATTGATTGTGCTGTTTCTCTAACTCCACATCAATCCTCCAACTGTTCAAGTGGTCTTGCAAAATCTTCAGGTCTTTATGATCATGTTAAAGGCCCTCCAATGACAGATAGTATAGGTGTTTTATCGAACACTTCTGTCAGGTTTGGTGATTTTGATGAAGTGCCAGGTCTAGCATTACCTGCAGATGCGTGTAGAAATAATAGTTCATCTCAAAAACACATACACATTGGCGATGCTACAGAATTCATAAATGAATGTAAAGATGAAAGTGAACTTAAAACTGAGCCGAATTTTTGTAAAACAATTGTTGAGACATCTCCTGTTATTATTCAAGGGGCAGAAACGCCCACTGAAGATGAGAGCAAGGTATTGGATATATGTGAAATAACAGATAATCGTTTGGATGTTAGTGGTTCACCTTCCTTGGACGACACAGTCTCCTTGTCCTGTGCAAACAATGATCTTGAAGTTCCAGTTAAGTCGTCTTCTGTTGCTTCAACAGAAAGCCAGACAGTTCTTCATGCACCAACTTCAGCAGATTTTGGAGGTGAAACTGCTGGAAGCAAAGAAAGGTTCAGGCAGAGACTCTGGTGTTTTCTTTTTGAGAATCTGAATAGGGCTGTGGATGAACTTTACCTCCTCTGTGAGTTAGAATGTGACATGGAGCAAATTAATGAATCCATCCTTGTTCTTGAAGAAGCTATATCTGATTTTCAAGAACTGAAATCCAGGGCGGAGCATTTTGATAACACCAAAAAATCTACTGCTCTACCAAAGGAGGGGATGCCAATGGCTGTGAAAGCTGACCATCGAAGACCACATGCCTTGTCTTGGGAGGTCAGAAGGATGACAAGTTCACCACACAGGCAAGAGATATTGTCTTCATCTCTAGAGGCATTTCAGAGAATTCAATTGGAACTGGCTCGCAAACAAGCTGGTATAACAACAGAGAGCTTTGCATCCAGCTCTTCTGGAGAAGTTTCTGGTAGCTCATCAAAGCTAACCACAGCATCAGCGACTGTTGGAAGTATAAGTTTGAAAGTGGAGAGTCAGGTGAAACTTTCTGACACTGAGAAAAAAATTGCTGGAGAGAGGCAAAGCAAGGATACAATCAAGTCAGGTAGATCACCTCCACAAAATATGCCTTCATCTTCTGCAAAGAGTCGAAAAGGATCACTGGAACCTATCTCTGAGGTAGAGAAGCATAATTTTAGGAAGGATAAGGAATTGCCAGAAAACAAATTTGACAAGCTCAGGTCAACAGATACGGCAAAAAGGACTACAGTTCATACTGAGAAGGAGAAACAAAATGCAGCACCACGGAAGTCATTGGATGCCTGGAAAGAGAAAAGAAACTGGGAAGATATACTGAAATCTCCTGTTCGGAGTTCTCGTGTCTCCCATTCCCCTGGTGTTGGCAGAAAAGTACCAGAGCGTGCTCGTGTTCTACATGACAAGTTAATGTCTCCTGAAAAGAAGAAAAGAAGTGCTTTGGACATGAAAAAGGAAGCAGAAGAAAAACATGCACGAGCTTTACGAATCCGGAGTCAACTAGAAAGTGAGAGAGTTCAGAGGCTGCAACGTACCTCTGAAAAGTTAAATCGTGTCAATGAATGGCAGGCTGTGCGCAGCTCAAAACTGCGAGAAGTAATGAATGCACGCCACCAACGTAGTGAATCTCGTCATGAGGCATACCTTGCCCAGGTTGCAAAAAGAGCTGGTGATGAGAGTACTAAGGTCAATGAGGTCCGTTTTATTACATCACTAAATGAAGAAAACAAGAAATTCTTACTGAGGCAGAAACTTCATGGTTCTGAAATGCGGAGAGCTGAAAAGCTACTGGTGATCAAAACAAAGCAAAAGGAGGACATTGCAAGGGAAGAAGCTGTATTGGAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTAAGAAAGAAGAAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAGAAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCACAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCAACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTGTTTGTTCCATATTG---TGTTGTAATAAAGATGTTTACTAATACCACTTTCTTTTTATTTTGGCACAGTATTTAGAAGGAAAGGATCTTGAATTACATGCA] [+] EMBL AK066631 [CTAGCCTCCCTAAAACGAAAAAAAAAGGAAAAAAAAAGAAAAAAAAAAACTGCGGCGAGCCGGAGACGTGGCTCCCCGACTCCTCGCGCGCGCGGCCGGCGGCGAGAAGGGCGGCGGCGGCGGCGGGGAAGGCCATCCTCCCCTCATGAGCGGCGTGGCCTCCTCGCGCGCGCGTCGGGGGAGCAGGCAGGTCTGGAGGGGCGACGCCGCCGACGACATCCTTCCGTCTCGGTTCGGATCGGATTGAAGGAATG CATGAGGAACCACTGAAGATTTATTGGTGGTAATGGAGAATGATCATGGAGATCTAGATGATGTGGGATCAGGGTGGCTTGAAGTGAAAAAAAAACACCGATCCAGCTCAAAATTCACATTGCAGAGGTCTTCAGGAGGTTCCAATGATAATAAAATTTCAAACTCGTCCTCACAATCTCAGACCAACTTTGGCAGTGATAGTGCAAAGTGGTGTGACAGGTTACAATGCTCACCTCAGATCACAAAGGTTAATGTTTGCGTTAATGAACCGGGTAGCGTAGTCACAATGGTTGTTCATGGTGAAGAATGTGCTCATGCAGATGCTAGCAATCTGAAGAGTGAATTAAGTGTTTCAGCCTCGGATCATGCAATAGAAAAACCTAAAAAACTGCTAGTGACTGAAGAAATAAGTGAACCTCCCAACGTTGGTAAGATTGACTGTGCTGATTCTCCAACTCCACATCAATCCTCCAACTGTTCAAGTGGTCTTGCAAAATCTTCAGGTTTTTATGATCATGTTAAAGGCCCTCCAATGACAGATAGTATAGGTGTTTTATCGAACACTTCTGTCAGGTTTGGTGATTTTGATGAAGTGCCAGGTCTAGCATTACCTGCAGATGCATGTAGAAATAATAGTTCATCTCAAAAACACATACACATTGGCGATGCTACAGAATTCATAAATGAATGTAAAGATGAAAGTGAACTTAAAACTGAGCCGAATTCTTGTAAAACAATTGTTGAGACATCTCCTGTTATTATTCAAGGGGCAGAAACGCCCACTGAAGATGAGAGCAAGGTATTGGATATATGTGAAATAACAGATAATCGTTTGGATGTTAGTGGTTCACCTTCCTTGGACGACACAGTCTCCTTGTCCTGTGCAAACAATGATCTTGAAGTTCCAGTTAAGTCGTCTTCTGTTGCTTCAACAGAAAGCCAGACAGTTCTTCATGCACCAACTTCAGCAGATTTTGGAGGTGAAACTGCTGGAAGCAAAGAAAGGTTCAGGCAGAGACTCTGGTGTTTTCTTTTTGAGAATCTGAATAGGGCTGTGGATGAACTTTACCTCCTCTGTGAGTTAGAATGTGACATGGAGCAAATTAATGAATCCATCCTTGTTCTTGAAGAAGCTATATCTGATTTTCAAGAACTGAAATCCAGGGCGGAGCATTTTGATAACACCAAAAAATCTACTGCTCTACCAAAGGAGGGGATGCCAATGGCTGTGAAAGCTGACCATCGAAGACCACATGCCTTGTCTTGGGAGGTCAGAAGGATGACAAGTTCACCACACAGGCAAGAGATATTGTCTTCATCTCTAGAGGCATTTCAGAGAATTCAATTGGAACTGGCTCGCAAACAAGCTGGTATAACAACAGAGAGCTTTGCATCCAGCTCTTCTGGAGAAGTTTCTGGTAGCTCATCAAAGCTAACCACAGCATCAGCGACTGTTGGAAGTATAAGTTTGAAAGTGGAGAGTCAGGTGAAACTTTCTGACACTGAGAAAAAAATTGCTGGAGAGAGGCAAAGCAAGGATACAATCAAGTCAGGTAGATCACCTCCACAAAATATGCCTTCATCTTCTGCAAAGAGTCGAAAAGGATCACTGGAACCTATCTCTGAGGTAGAGAAGCATAATTTTAGGAAGGATAAGGAATTGCCAGAAAACAAATTTGACAAGCTCAGGTCAACAGATACGGCAAAAAGGACTACAGTTCATACTGAGAAGGAGAAACAAAATGCAGCACCACGGAAGTCATTGGATGCCTGGAAAGAGAAAAGAAACTGGGAAGATATACTGAAATCTCCTGTTCGGAGTTCTCGTGTCTCCCATTCCCCTGGTGTTGGCAGAAAAGTACCAGAGCGTGCTCGTGTTCTACATGACAAGTTAATGTCTCCTGAAAAGAAGAAAAGAAGTGCTTTGGACATGAAAAAGGAAGCAGAAGAAAAACATGCACGAGCTTTACGAATCCGGAGTCAACTAGAAAGTGAGAGAGTTCAGAGGCTGCAACGTACCTCTGAAAAGTTAAATCGTGTCAATGAATGGCAGGCTGTGCGCAGCTCAAAACTGCGAGAAGTAATGAATGCACGCCACCAACGTAGTGAATCTCGTCATGAGGCATACCTTGCCCAGGTTGCAAAAAGAGCTGGTGATGAGAGTACTAAGGTCAATGAGGTCCGTTTTATTACATCACTAAATGAAGAAAACAAGAAATTCTTACTGAGGCAGAAACTTCATGGTTCTGAAATGCGGAGAGCTGAAAAGCTACTGGTGATCAAAACAAAGCAAAAGGAGGACATTGCAAGGGAAGAAGCTGTATTGGAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTAAGAAAGAAGAAGCTATTATTAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAGAAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCACAAATAATAAGCAGTGCCAACGCTGCTGAGTCTGGTGTTAAATCATTCAATTCCACGCAAATGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGCGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATGACAAAGGTACTTCTTGTTTGTTCCATATTG TGTTGTAATAAAGATGTTTACTAATACCACTTTCTTTTT ] [+] EMBL CB633473 [ CGGTTCGGATCGGATTGAAGGAATGCCATGAGGAACCACTGAGGATTTATTGGTGGTAATGGAGAATGATCATGGAGATCTAGATGATGTGGGATCGGGGTGGCTTGAAGTGAAAAAAAAACACCGATCCAGCTCAAAATTCACACTGCAGAGGTCTTCAGGAGGTTCCAATGATAATAAAATTTCAAACTCGTCCTCACAATCTCAGACCAACTTTGGCAGTGATAGTGCAAAGTGGTGCGACAGGTTACAATGCCCACCTCAGATCACAAAGGTTAATGTTTGCGTTAATGAACCGGGTAGCGTAGTCACGATGGTTGTTCATGATGAAGAATGTGCTCATGCAGATGTTACCAACCTGAAGAGTGAATTAAGTGTTTCAGACTTGGAGCATGCAATAGAAAAACCTAAAAAACTGCTAGTGACTGAAGAAATAAGTGAACCTCCCAACGTTGGTAAGATTGATTGTGCTGTTTCTCTAACTCCACATCAATCCTCCAACTGTTCAAGTGGTCTTGCAAAATCTTCAGGTCTTTATGATCATGTTAAAGGCCCTCCAATGACAGATAGTATAGGTGTTTTATCGAACACTTCTGTCAGGTTTGGTGATTTTGATGAAGTGCCAGGTCTAGCATTACCTGCAGATGCGTGTAGAAATAATAGTTCATCTCAAAAACACATACACATTGGCGATGCTACAGAATTCATAAATGAATGTAAAGATGAAAGTGAACTTAAAACTGAGCCGAATTTTTGTAAAACAATTGTTGAGACATCTCCTGTTATTATTCAAGGng ] [+] EMBL CB633471 [ CGGTTCGGATCGGATTGAAGGAATGCCATGAGGAACCACTGAGGATTTATTGGTGGTAATGGAGAATGATCATGGAGATCTAGATGATGTGGGATCGGGGTGGCTTGAAGTGAAAAAAAAACACCGATCCAGCTCAAAATTCACACTGCAGAGGTCTTCAGGAGGTTCCAATGATAATAAAATTTCAAACTCGTCCTCACAATCTCAGACCAACTTTGGCAGTGATAGTGCAAAGTGGTGCGACAGGTTACAATGCCCACCTCAGATCACAAAGGTTAATGTTTGCGTTAATGAACCGGGTAGCGTAGTCACGATGGTTGTTCATGATGAAGAATGTGCTCATGCAGATGTTACCAACCTGAAGAGTGAATTAAGTGTTTCAGACTTGGAGCATGCAATAGAAAAACCTAAAAAACTGCTAGTGACTGAAGAAATAAGTGAACCTCCCAACGTTGGTAAGATTGATTGTGCTGTTTCTCTAACTCCACATCAATCCTCCAACTGTTCAAGTGGTCTTGCAAAATCTTCAGGTCTTTATGATCATGTTAAAGGCCCTCCAATGACAGATAGTATAGGTGTTTTATCGAACACTTCTGTCAGGTTTGGTGATTTTGATGAAGTGCCAGGTCTAGCATTACCTGCAGATGCGTGTAGAAATAATAGTTCATCTCAAAAACACATACACATTGGCGATGCTACAGAATTCATAAATGAATGTAAAGATGAAAGTGAACTTAAAACTGAGCCGAATTTTTGTAAAACAATTGTTGAG ] [-] EMBL CB633472 [ AACAAAGCAAAAGGAGGACATTGCAAGGGAAGAAGCTGTATTGGAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTAAGAAAGAAGAAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAGAAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCACAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCAACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTGTTTGTTCCATATTGTGTTGTTGTAATAAAGATGTTTACTAATACCACTTTCTTTTTATTTTGGCACAGTATTTAGAAGGAAAGGATCTTGA ] [-] EMBL CB633474 [ AAGAAGCTGTATTGGAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTAAGAAAGAAGAAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAGAAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCACAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCAACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTGTTTGTTCCATATTGTGTTGTTGTAATAAAGATGTTTACTAATACCACTTTCTTTTTATTTTGGCACAGTATTTAGAAGGAAAGGATCTTGAATTACATGCA] consensusID : consensus_9871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 840 fasta sequence [TGTATCGTAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTAAGAAAGAAGAAGCTCTTATTAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAGAAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCACAAATAATAAGCAGTGCCAACGCTGCTGAGTCTGGTGTTAAATCATTCAATTCCACGCAAATGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGCGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATGACAAAGTATTTAGAAGGAAAGGATCTTGAATTACATGCATCTAGACAAGTTGGCTTGCTTGATTTTATTGCATCTGCTTTACCTGCCTCTCACACTTCAAGGCCTGGAGCTTGTCAAGTCACTGTCTACCTACTACGACTGTTGAGAGTGTTGCTCTCGCTTCCAGCCAATCGAACTTATTTTCTTGTACA] [+] EMBL CB676007 [TGTATCGTAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTAAGAAAGAAGAAGCTCTTATTAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAGAAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCACAAATAATAAGCAGTGCCAACGCTGCTGAGTCTGGTGTTAAATCATTCAATTCCACGCAAATGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGCGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATGACAAAGTATTTAGAAGGAAAGGATCTTGAATTACATGCATCTAGACAAGTTGGCTTGCTTGATTTTATTGCATCTGCTTTACCTGCCTCTCACACTTCAAGGCCTGGAGCTTGTCAAGTCACTGTCTACCTACTACGACTGTTGAGAGTGTTGCTCTCGCTTCCAGCCAATCGAACTTATTTTCTTGTACA] consensusID : consensus_9871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTGACTTGGAGAAGATCAACGGTCTGCCTGAAATCAGCTGTAAGAAAGAAGCAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCGCGAGAACCTAGGGCTTCAGATCAGCACCGTAGAAAAGAGATAAGAGCAAAAGCTCACCAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATCCGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTAAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCCCAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCAACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTGTTTGTTCCATATTGTGTTGTTGTGATAAAGATGTTTCCTAAAAAAAAAAAAAA] [-] EMBL CA761620 [TTGACTTGGAGAAGATCAACGGTCTGCCTGAAATCAGCTGTAAGAAAGAAGCAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCGCGAGAACCTAGGGCTTCAGATCAGCACCGTAGAAAAGAGATAAGAGCAAAAGCTCACCAAGAAGAGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTAAGTATTACCTTGAGCAGATCCGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCACCTTTTAAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTGGAGAAGATTCCCAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCAACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGCATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAGGTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTAGAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTGTTTGTTCCATATTGTGTTGTTGTGATAAAGATGTTTCCTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9871#0 CTAGCCTCCCTAAAACGAAAAAAAAAGGAAAAAAAAAGAAAAAAAAAAACTGCGGCGAGC 60 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CGGAGACGTGGCTCCCCGACTCCTCGCGCGCGCGGCCGGCGGCGAGAAGGGCGGCGGCGG 120 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CGGCGGGGAAGGCCATCCTCCCCTCATGAGCGGCGTGGCCTCCTCGCGCGCGCGTCGGGG 180 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GAGCAGGCAGGTCTGGAGGGGCGACGCCGCCGACGACATCCTTCCGTCTCGGTTCGGATC 240 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GGATTGAAGGAATGCCATGAGGAACCACTGAGGATTTATTGGTGGTAATGGAGAATGATC 300 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 ATGGAGATCTAGATGATGTGGGATCGGGGTGGCTTGAAGTGAAAAAAAAACACCGATCCA 360 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GCTCAAAATTCACACTGCAGAGGTCTTCAGGAGGTTCCAATGATAATAAAATTTCAAACT 420 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CGTCCTCACAATCTCAGACCAACTTTGGCAGTGATAGTGCAAAGTGGTGCGACAGGTTAC 480 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AATGCCCACCTCAGATCACAAAGGTTAATGTTTGCGTTAATGAACCGGGTAGCGTAGTCA 540 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CGATGGTTGTTCATGATGAAGAATGTGCTCATGCAGATGTTACCAACCTGAAGAGTGAAT 600 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 TAAGTGTTTCAGACTTGGAGCATGCAATAGAAAAACCTAAAAAACTGCTAGTGACTGAAG 660 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAATAAGTGAACCTCCCAACGTTGGTAAGATTGATTGTGCTGTTTCTCTAACTCCACATC 720 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AATCCTCCAACTGTTCAAGTGGTCTTGCAAAATCTTCAGGTCTTTATGATCATGTTAAAG 780 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GCCCTCCAATGACAGATAGTATAGGTGTTTTATCGAACACTTCTGTCAGGTTTGGTGATT 840 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 TTGATGAAGTGCCAGGTCTAGCATTACCTGCAGATGCGTGTAGAAATAATAGTTCATCTC 900 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAAAACACATACACATTGGCGATGCTACAGAATTCATAAATGAATGTAAAGATGAAAGTG 960 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AACTTAAAACTGAGCCGAATTTTTGTAAAACAATTGTTGAGACATCTCCTGTTATTATTC 1020 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAGGGGCAGAAACGCCCACTGAAGATGAGAGCAAGGTATTGGATATATGTGAAATAACAG 1080 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 ATAATCGTTTGGATGTTAGTGGTTCACCTTCCTTGGACGACACAGTCTCCTTGTCCTGTG 1140 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CAAACAATGATCTTGAAGTTCCAGTTAAGTCGTCTTCTGTTGCTTCAACAGAAAGCCAGA 1200 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CAGTTCTTCATGCACCAACTTCAGCAGATTTTGGAGGTGAAACTGCTGGAAGCAAAGAAA 1260 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GGTTCAGGCAGAGACTCTGGTGTTTTCTTTTTGAGAATCTGAATAGGGCTGTGGATGAAC 1320 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 TTTACCTCCTCTGTGAGTTAGAATGTGACATGGAGCAAATTAATGAATCCATCCTTGTTC 1380 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 TTGAAGAAGCTATATCTGATTTTCAAGAACTGAAATCCAGGGCGGAGCATTTTGATAACA 1440 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CCAAAAAATCTACTGCTCTACCAAAGGAGGGGATGCCAATGGCTGTGAAAGCTGACCATC 1500 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GAAGACCACATGCCTTGTCTTGGGAGGTCAGAAGGATGACAAGTTCACCACACAGGCAAG 1560 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AGATATTGTCTTCATCTCTAGAGGCATTTCAGAGAATTCAATTGGAACTGGCTCGCAAAC 1620 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAGCTGGTATAACAACAGAGAGCTTTGCATCCAGCTCTTCTGGAGAAGTTTCTGGTAGCT 1680 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CATCAAAGCTAACCACAGCATCAGCGACTGTTGGAAGTATAAGTTTGAAAGTGGAGAGTC 1740 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AGGTGAAACTTTCTGACACTGAGAAAAAAATTGCTGGAGAGAGGCAAAGCAAGGATACAA 1800 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 TCAAGTCAGGTAGATCACCTCCACAAAATATGCCTTCATCTTCTGCAAAGAGTCGAAAAG 1860 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GATCACTGGAACCTATCTCTGAGGTAGAGAAGCATAATTTTAGGAAGGATAAGGAATTGC 1920 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CAGAAAACAAATTTGACAAGCTCAGGTCAACAGATACGGCAAAAAGGACTACAGTTCATA 1980 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CTGAGAAGGAGAAACAAAATGCAGCACCACGGAAGTCATTGGATGCCTGGAAAGAGAAAA 2040 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GAAACTGGGAAGATATACTGAAATCTCCTGTTCGGAGTTCTCGTGTCTCCCATTCCCCTG 2100 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 GTGTTGGCAGAAAAGTACCAGAGCGTGCTCGTGTTCTACATGACAAGTTAATGTCTCCTG 2160 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAAAGAAGAAAAGAAGTGCTTTGGACATGAAAAAGGAAGCAGAAGAAAAACATGCACGAG 2220 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 CTTTACGAATCCGGAGTCAACTAGAAAGTGAGAGAGTTCAGAGGCTGCAACGTACCTCTG 2280 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAAAGTTAAATCGTGTCAATGAATGGCAGGCTGTGCGCAGCTCAAAACTGCGAGAAGTAA 2340 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 TGAATGCACGCCACCAACGTAGTGAATCTCGTCATGAGGCATACCTTGCCCAGGTTGCAA 2400 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAAGAGCTGGTGATGAGAGTACTAAGGTCAATGAGGTCCGTTTTATTACATCACTAAATG 2460 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAGAAAACAAGAAATTCTTACTGAGGCAGAAACTTCATGGTTCTGAAATGCGGAGAGCTG 2520 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 ------------------------------------------------------------ consensus_9871#0 AAAAGCTACTGGTGATCAAAACAAAGCAAAAGGAGGACATTGCAAGGGAAGAAGCTGTAT 2580 consensus_9871#2 ------------------------------------------------------------ consensus_9871#1 -------------------------------------------------------TGTAT 5 consensus_9871#0 TGGAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTA 2640 consensus_9871#2 ------------------TTGACTTGGAGAAGATCAACGGTCTGCCTGAAATCAGCTGTA 42 consensus_9871#1 CGTAACGGAGAAAAATTCTTGAAGCTGAGAAGATGCAACGTCTTGCTGAAATACAGCGTA 65 **** ******** * **** ******* *** consensus_9871#0 AGAAAGAAGAAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAG 2700 consensus_9871#2 AGAAAGAAGCAGCTATTATCAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCGCGAG 102 consensus_9871#1 AGAAAGAAGAAGCTCTTATTAGAAGAGAAGAGGAGCGCAAAGCATCTAGTGCTGCACGAG 125 ********* **** **** *********************************** **** consensus_9871#0 AAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAG 2760 consensus_9871#2 AACCTAGGGCTTCAGATCAGCACCGTAGAAAAGAGATAAGAGCAAAAGCTCACCAAGAAG 162 consensus_9871#1 AAGCGAGGGCTGCAGAGCAGCAACGTAGAAAAGAGATAAGAGCAAAAGCTCAACAAGAAG 185 ** * ****** **** ***** ***************************** ******* consensus_9871#0 AGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTA 2820 consensus_9871#2 AGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTA 222 consensus_9871#1 AGGCTGAACTGTTAGCCCAAAAATTAGCAGAGAAGCTTCGTGAAAGTGAGCAGCGCCGTA 245 ************************************************************ consensus_9871#0 AGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCAC 2880 consensus_9871#2 AGTATTACCTTGAGCAGATCCGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCAC 282 consensus_9871#1 AGTATTACCTTGAGCAGATACGTGAGAGAGCTTCAATGGATTTCAGGGATCAGCCTTCAC 305 ******************* **************************************** consensus_9871#0 CTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTG 2940 consensus_9871#2 CTTTTAAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTG 342 consensus_9871#1 CTTTTCAGCGCCGCTTTCCAAGTAAAGATAACCAAAATCGTTCTAGCTCAGCTAATAGTG 365 ***** ****************************************************** consensus_9871#0 GAGAAGATTCACAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCA 3000 consensus_9871#2 GAGAAGATTCCCAAATAATAAGCAGTGCCAACACTGCTGAGTCTGGTGTTAAATCATTCA 402 consensus_9871#1 GAGAAGATTCACAAATAATAAGCAGTGCCAACGCTGCTGAGTCTGGTGTTAAATCATTCA 425 ********** ********************* *************************** consensus_9871#0 ACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGC 3060 consensus_9871#2 ACTCCACGCAATTGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGC 462 consensus_9871#1 ATTCCACGCAAATGAAACGAAGGATTAAAAAGATACGCCAGAGGTTAATGGCTCTTAAGC 485 * ********* ************************************************ consensus_9871#0 ATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAG 3120 consensus_9871#2 ATGATTTTGTTGAACCACTCATAGGTGAAAATACAGGAATTGTGCACAGGTCTGCTCTAG 522 consensus_9871#1 ATGATTTTGTTGAACCACTCATAGGCGAAAATACAGGAATTGTGCACAGGTCTGCTCTAG 545 ************************* ********************************** consensus_9871#0 GTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTA 3180 consensus_9871#2 GTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTA 582 consensus_9871#1 GTACTGCAAAAGCTAAGTTAAGTAGATGGCTTCAGGACTTGCAAAGACTTCGTCAAGCTA 605 ************************************************************ consensus_9871#0 GAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTG 3240 consensus_9871#2 GAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATTACAAAGGTACTTCTTG 642 consensus_9871#1 GAAAAGAGGGTGCTGCGAGTATTGGTTTGATTGTTAGTGACATGACAAAG-TATTTAGAA 664 ******************************************* ****** ** ** consensus_9871#0 ---------TTTGTTCCATATTGTGTTGT---AATAAAGATGTTTACTAATACCACTTTC 3288 consensus_9871#2 ---------TTTGTTCCATATTGTGTTGTTGTGATAAAGATGTTTCCTAAAAAAAAAAAA 693 consensus_9871#1 GGAAAGGATCTTGAATTACATGCATCTAGACAAGTTGGCTTGCTTGATTTTATTGCATCT 724 *** * ** * * ** ** * * consensus_9871#0 TTTTTATTTTGGCACAGTATTTAGAAGG--AAAGGATCTTGAATTAC-ATGCA------- 3338 consensus_9871#2 AA---------------------------------------------------------- 695 consensus_9871#1 GCTTTACCTGCCTCTCACACTTCAAGGCCTGGAGCTTGTCAAGTCACTGTCTACCTACTA 784 consensus_9871#0 -------------------------------------------------------- consensus_9871#2 -------------------------------------------------------- consensus_9871#1 CGACTGTTGAGAGTGTTGCTCTCGCTTCCAGCCAATCGAACTTATTTTCTTGTACA 840 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||