cluster # 988

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Oryza sativa
cluster # 988 cluster # 988 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_988#0 length = 555 sequences # 1

consensus_988#1 length = 302 sequences # 1

consensusID : consensus_988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTAGCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAGATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATATTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTCAGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGTTAGTCGTAACAGTAGTAGTTAAGTCACGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTTTCAAGTGTCAAAGTCACNTTGTCAGTCACTGTGTCGTCGTAGTTAGTCGTAACCAGTAGTATCCCGCAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACTAAAGTGAAACAANACAGTGTCAAAA]

[+] EMBL BQ909106             [CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTAGCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAGATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATATTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTCAGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGTTAGTCGTAACAGTAGTAGTTAAGTCACGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTTTCAAGTGTCAAAGTCACNTTGTCAGTCACTGTGTCGTCGTAGTTAGTCGTAACCAGTAGTATCCCGCAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACTAAAGTGAAACAANACAGTGTCAAAA]




>consensus_988#0
CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTA
GCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAG
ATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATA
TTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTC
AGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGTTAGTCGTAACAGTAGTAGTTAA
GTCACGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTTTCAAGTGTCAAAGT
CACNTTGTCAGTCACTGTGTCGTCGTAGTTAGTCGTAACCAGTAGTATCCCGCAGCAAAG
CGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCA
GTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACTAAAGTGAAAC
AANACAGTGTCAAAA

consensusID : consensus_988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTGTAAAGTCAGTGTCGTGTAGNTCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGTCAGAAGTCAGTTGTCAGTCAGGTGTGTCGTCGTAGTGTAGTCGTAACAGTAGTAGTCCCGCAAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATAGGAATAAAGTGAAACAAACAGTGTCAAAA]

[+] EMBL BM038171             [GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTGTAAAGTCAGTGTCGTGTAGNTCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGTCAGAAGTCAGTTGTCAGTCAGGTGTGTCGTCGTAGTGTAGTCGTAACAGTAGTAGTCCCGCAAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATAGGAATAAAGTGAAACAAACAGTGTCAAAA]




>consensus_988#1
GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTGTAAAGTCAGTGTCGTGTAGN
TCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGTCAGAAGTCAGTTGTCAGTCA
GGTGTGTCGTCGTAGTGTAGTCGTAACAGTAGTAGTCCCGCAAGCAAAGCGCGGAGCATT
TAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCA
TATTTTAGTCAAATTTTCATCGCATATTTTATAGGAATAAAGTGAAACAAACAGTGTCAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_988#0      CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTA 60
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      GCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAG 120
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      ATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATA 180
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      TTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTC 240
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      AGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGT-TAGTCGTAAC-AGTAGTAGTT 298
consensus_988#1      --------------------GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTG 40
                                         *****  ******** ** ********** ********* 

consensus_988#0      --AAGTCA-CGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTT-TCAAGTGT 354
consensus_988#1      TAAAGTCAGTGTCGTGTAGNTCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGT 100
                       ******  **  * *** ************** * ****  * ** * * ********

consensus_988#0      CAAAGTCACNTTGTCAGTCAC-TGTGTCGTCGTAGT-TAGTCGTAACCAGTAGTA-TCCC 411
consensus_988#1      CAGAAGTCAGTTGTCAGTCAGGTGTGTCGTCGTAGTGTAGTCGTAAC-AGTAGTAGTCCC 159
                     ** *      **********  ************** ********** ******* ****

consensus_988#0      GCA-GCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATG 470
consensus_988#1      GCAAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATG 219
                     *** ********************************************************

consensus_988#0      TCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACT 530
consensus_988#1      TCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATAGGAA-T 278
                     ****************************************************** * * *

consensus_988#0      AAAGTGAAACAANACAGTGTCAAAA 555
consensus_988#1      AAAGTGAAACAAA-CAGTGTCAAAA 302
                     ************  ***********