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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1701 fasta sequence
[ATATCACACTAAGGAAACTTACTTCCCTTGAGCGGAAAAAATTTGTTGACGAAGCTAAATCTTTGTCAGAGGAGATCTCCAAGTTAAATGAGCTCCTGTCTAACAAGAAGCTTATTTTTCAGCTTATTTTACAAGAGGCAACTGACTTAAAGAACAAATTTGCTACCCCACGACGTTCTTTCATAGAAGATTCAGCAAGCACTGAAGTTGATGATCTTGATATTATTCCTAATGAGGAAATGCTTTTGATTCTTAGTGAGAAGGGCTACGTTAAGCGTATGAAGCCTAATACCTTCAATCTACAAAACCGGGGAACGATCGGAAAATCTGTTGGAAAGATGCGAATGAACGACAATACATCCGATTTCATTGTCTGCCAAACACATGATCATGTCCTTTACTTCAGTGACAAGGGAATAGTATACTCAGCACGTGCTTATAAGATACCTGAATGCACAAGAGCTGCGACTGGAACTCCACTGGTACAGCTGCTTTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATGAATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGCGCCCTTGGAAGGAAAACAAGGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAG-CGTGT-GCCCCTAAATGCA-TTCCGGCAA-GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAGTGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAACTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCGCTACTGCTGGACTGGTGTGCTTCTTCTGTGTTGAGAACTACTGATTCTTGCGCATCCCCCGTTGCGTTAGCAACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATCTTTCTAATTCGCCTTAAAAAA]
[+] EMBL AK059281 [ATATCACACTAAGGAAACTTACTTCCCTTGAGCGGAAAAAATTTGTTGACGAAGCTAAATCTTTGTCAGAGGAGATCTCCAAGTTAAATGAGCTCCTGTCTAACAAGAAGCTTATTTTTCAGCTTATTTTACAAGAGGCAACTGACTTAAAGAACAAATTTGCTACCCCACGACGTTCTTTCATAGAAGATTCAGCAAGCACTGAAGTTGATGATCTTGATATTATTCCTAATGAGGAAATGCTTTTGATTCTTAGTGAGAAGGGCTACGTTAAGCGTATGAAGCCTAATACCTTCAATCTACAAAACCGGGGAACGATCGGAAAATCTGTTGGAAAGATGCGAATGAACGACAATACATCCGATTTCATTGTCTGCCAAACACATGATCATGTCCTTTACTTCAGTGACAAGGGAATAGTATACTCAGCACGTGCTTATAAGATACCTGAATGCACAAGAGCTGCGACTGGAACTCCACTGGTACAGCTGCTTTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATGAATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGCGCCCTTGGAAGGAAAACAAGGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAG CGTGT GCCCCTAAATGCA TTCCGGCAA GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAGTGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAACTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCGCTACTGCTGGACTGGTGTGCTTCTTCTGTGTTGAGAACTACTGATTCTTGCGCATCCCCCGTTGCGTTAGCA ]
[+] EMBL AF140497 [ TTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATGAATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGAACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGTGCCCTTGGAAGGAAAACAAGGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCG CATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAGCCGTGT GCCCCTAAATGCATTTCCGGCAAGGGAAATTTCAACAGAGT ]
[+] EMBL D42365 [ TGACCGTTAAC GTTATATCAAGAAAGTTCCTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTGGTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCACAAAATGGGATGGTTATAGTTAATACATGC ]
[+] EMBL BP185016 [ acgAGG AGGTGACAAGATGGCATCCATGGATATAATTCCAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCATGGCTGCTTTTCATAGCTGATAATGGTATTGGGAAG CGTGT GCCCCTAAATGCA TTCCGGCAA GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAATATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAGTGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAACTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAACCGAA ]
[+] EMBL OS1484A [ ccG CGTGTNGCCCCTAAATGCA TTCCGGCAA GGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAGCTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGGTTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGTCTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAGCCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTNAGCCTNANTAATATCAG ]
[+] EMBL AU082662 [ CTCTAGTTGCCATTAACTACCTGTGNCTAGCTAGATATGTAGGNTTTCCTTGGCAGGAACCGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCGCTACTGCTGGACTGGTGTGCTTCTTCNGTGTTGAGAACTACTGATTCTTGCGCATCCCCCGTTGCGTTAGCAACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATCTTTCTAATTCGCCTTAAAAAA]
consensusID : consensus_9880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[GACCCGGAGGTTTCAGCTTAGGAGTGGCGACTGCACTCATTTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAAATTCATTCCCCGCCGAAGCACCCGGGTGATTCGGACAGAACTTTAGTTGCCATTAACTACCTGTGTTTAGCTAAATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTTGCAAGGCTACATTTGCCATGAGCAGTTGATGCATCCAGCCCCTCATGCGGTAATGTTGGGCTGGTGTGCTTTTTTTGTGTTGAGAACTACTGATTTTTGGGCATCCCCCGTTGGGTTAGCCACAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA758023 [GACCCGGAGGTTTCAGCTTAGGAGTGGCGACTGCACTCATTTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGGCGGCTCAGCGATCATGCAAAATTCATTCCCCGCCGAAGCACCCGGGTGATTCGGACAGAACTTTAGTTGCCATTAACTACCTGTGTTTAGCTAAATATGTAGGATTTCCTTGGCAGGAACCGAACGTGCTTGCAAGGCTACATTTGCCATGAGCAGTTGATGCATCCAGCCCCTCATGCGGTAATGTTGGGCTGGTGTGCTTTTTTTGTGTTGAGAACTACTGATTTTTGGGCATCCCCCGTTGGGTTAGCCACAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9880#0 ATATCACACTAAGGAAACTTACTTCCCTTGAGCGGAAAAAATTTGTTGACGAAGCTAAAT 60
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CTTTGTCAGAGGAGATCTCCAAGTTAAATGAGCTCCTGTCTAACAAGAAGCTTATTTTTC 120
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 AGCTTATTTTACAAGAGGCAACTGACTTAAAGAACAAATTTGCTACCCCACGACGTTCTT 180
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TCATAGAAGATTCAGCAAGCACTGAAGTTGATGATCTTGATATTATTCCTAATGAGGAAA 240
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TGCTTTTGATTCTTAGTGAGAAGGGCTACGTTAAGCGTATGAAGCCTAATACCTTCAATC 300
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TACAAAACCGGGGAACGATCGGAAAATCTGTTGGAAAGATGCGAATGAACGACAATACAT 360
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CCGATTTCATTGTCTGCCAAACACATGATCATGTCCTTTACTTCAGTGACAAGGGAATAG 420
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TATACTCAGCACGTGCTTATAAGATACCTGAATGCACAAGAGCTGCGACTGGAACTCCAC 480
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TGGTACAGCTGCTTTCTTTGTCCGATGGGGAGAGAATAACCTCCATCGTTCCTGTAAATG 540
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 AATTTGGTGAAGATCAGTATCTTGTGATGCTGACCGTTAACGGTTATATCAAGAAAGTTC 600
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CTCTTAATGCTTTCTCAGCAATCAGGACTTCTGGGATCATTTCAATTCAACTGGCTCCTG 660
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 GTGATGAGCTGAAGTGGGTTCGTCGTTGTGGGGATGATGACCTTGTTGCTTTGGCTTCAC 720
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 AAAATGGGATGGTTATAGTTAATACATGCAACAAGCTTCGCGCCCTTGGAAGGAAAACAA 780
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 GGGGCGTCCTGGCAATGAAGCTAAAGGAAGGTGACAAGATGGCATCCATGGATATAATTC 840
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CAGCAACGTCGCATAACATGCCTGAAACTTACAGCAGAGTCAGAGATTTGAGTCCGCCAT 900
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 GGCTGCTTTTCATAGCTGATAATGGTATTGGGAAGCGTGTGCCCCTAAATGCATTCCGGC 960
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 AAGGAAATTTCAACAGAGTGGGCTTGCAAGGCTACAAGCTTCCACCAGACTGTAGCTTAG 1020
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CTGCTGTATTTGTTGTTGGATTTTCACTTACTGATGACGGTGAAAGTGACGAACAGGTGG 1080
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TTTTAGTTAGCCAGAGTGGTACTGTAAACAGAATCAAAGTCAAAGATATATCCATCCGGT 1140
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CTCGTTCCGCAAGGGGAGTCATTCTGATGAGGCTGGAACATGCTGGGAAGATCCAGTCAG 1200
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 CCTCACTAATATCAGCAGCAGAAGAGGAGGAAGAACAGGACCCGGAGTCAGCCTCACTAA 1260
consensus_9880#1 ------------------------------------------------------------
consensus_9880#0 TATCAGAAGCAGAAGAGCCGGAAAAACAAGACCCGGAGGTCTCAGCTTAGGAGTGGCGAG 1320
consensus_9880#1 -----------------------------GACCCGGAGGTTTCAGCTTAGGAGTGGCGAC 31
*********** ******************
consensus_9880#0 TGCACTCATCTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGG 1380
consensus_9880#1 TGCACTCATTTATTGAAGGCCTCGCTGATGTGATTGCAGTTCGGGGATGCAATTTTTGGG 91
********* **************************************************
consensus_9880#0 CGGCTCAGCGATCATGCAAGATTCATTCCACGCCGAAGCACACGGCTGATTCGGACAGAA 1440
consensus_9880#1 CGGCTCAGCGATCATGCAAAATTCATTCCCCGCCGAAGCACCCGGGTGATTCGGACAGAA 151
******************* ********* *********** *** **************
consensus_9880#0 CTCTAGTTGCCATTAACTACCTGTGTCTAGCTAGATATGTAGGATTTCCTTGGCAGGAAC 1500
consensus_9880#1 CTTTAGTTGCCATTAACTACCTGTGTTTAGCTAAATATGTAGGATTTCCTTGGCAGGAAC 211
** *********************** ****** **************************
consensus_9880#0 CGAACGTGCTCGCAAGGCTACATCTGCCATGAGCAGTTGATGCATCCAGCACCTCATGCG 1560
consensus_9880#1 CGAACGTGCTTGCAAGGCTACATTTGCCATGAGCAGTTGATGCATCCAGCCCCTCATGCG 271
********** ************ ************************** *********
consensus_9880#0 CTACTGCTGGACTGGTGTGCTTCTTCTGTGTTGAGAACTACTGATTCTTGCGCATCCCCC 1620
consensus_9880#1 GTAATGTTGGGCTGGTGTGCTTTTTTTGTGTTGAGAACTACTGATTTTTGGGCATCCCCC 331
** ** *** *********** ** ******************** *** *********
consensus_9880#0 GTTGCGTTAGCAACAGTTTATGATGGCCTTCTGTGTATACCCATTTTGCTGTGATCGATC 1680
consensus_9880#1 GTTGGGTTAGCCACAGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 382
**** ****** ******* * * * * *
consensus_9880#0 TTTCTAATTCGCCTTAAAAAA 1701
consensus_9880#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||