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Oryza sativa
cluster # 9881 cluster # 9881       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9881#0 length = 1274 sequences # 7  

consensusID : consensus_9881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1274
fasta sequence
                              [ACGTGATCAGAAGCAAAGCTAGCGTGCGTTTGCAATGGCGGCAGTGGTGACCAACAGGAGGGTGATCCTGAAGAGGTACGTGACAGGGCTCCCATCGGAGGACGACATGGAGGTGGTGACGGCGAAGA-GANCGCTGGCCGTGCCGGCTGGGTCGGAGGCGGTGATGGTGAAGAACCTGTACGTCTCGTGTGACCCTTACATGCGTGGCCGGATGACCCGTCACGAGGTGCCCAGCTACGTTCCCGACTACGTACCAGGAGAGGTTATCACTAATTGTGGCGTGATGAAGGTGGTATCATCTGGGCACCCGGATTTCAAGGATGGAGACCTTGTTTGGGGAGTAACCGGATGGGAAGAATACANCCTGGTTAACAATCCCAAGCCTTATTTGCATAAGATCAATTACCCTGAATTTCCTCTATCTTACTACACCGGTGTTCTTGGAATAGCTGGGCTTACTGCCTATGGTGGGTTCTTTGAGGTCTCCAAGCCTAAGAAAGGCGACTATGTTTTCGTCTCCGCGGCATCCGGTGCCGTAGTCAAGCTGCTCAAAACTAAGTTTGGCTTTCATGACGCGTTCAACTACAAGAAGGAGCTGGACCTGGAGGGAGCCCTTAAAAGGTGCTTCCCGGACGGCATCGACATCTACTTTGATAACGTGGGTGGTGCAATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGATATGTGGGATGATCTCGCAATATAACCTGGAGCGGCCAGACGGGGTGCGGAACCTCTTCTACTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTACATTGCAATATACCACCGGTA-TGAGAA-GGAGATGGCAGGATACCTGAGGGAA-GGAAAGGTGGTGTATGTGGAGGACATCGTTGAAGGGCTCGAGGCGGCACCGGNAGCTCTCATNGGGCTATTCANTGGCCGAAATGTCGGNAAGCAACTGGGTCACCATTGCACGGGAGTGATGTCGTTGGTTGCATTGGTATGTACTACCTCTGTCCCGAAATATTACAATTTTTAGCTACGAATCTGGACATATAGGTGACCAGATTCATAGCTAAAAATTGCTATATTTTGGGACGGAGGTAGTACGTACTAACCATACTTATTTATGAAATCTGAAATGGATGTCTTGTTTGTTTTGTCGGGTTCAGAAATATGAGATAAAATATTGTGCCGGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS15155A            [ACGTGATCAGAAGCAAAGCTAGCGTGCGTTTGCAATGGCGGCAGTGGTGACCAACAGGAGGGTGATCCTGAAGAGGTACGTGACAGGGCTCCCATCGGAGGACGACATGGAGGTGGTGACGGCGAAGA GACCGCTGGCCGTGCCGGCTGGGTCGGAGGCGGTGATGGTGAAGAACCTGTACGTCTCGTGTGACCCTTACATGCGTGGCCGGATGACCCGTCACGAGGTGCCCAGCTACGTTCCCGACTACGTACCAGGAGAGGTTATCACTAATTGTGGCGTGATGAAGGTGGTATCATCTGGGCACCCGGATTTCAAGGATGGAGACCTTGTTTGGGGAGTAACCGGATGGGAAGAATACANCCTGGTTAACAATCCCAAGNCTTATTTGCATAAGATCAATTACCCTGAATTTCCTCTATCTTACTACAACNGTGTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSR32491A            [                                 AATGGCGGCAGTGGTGACCAACAGGAGGGTGATCCTGAAGAGGTACGTGACAGGGCTCCCATCGGAGGACGACATGGAGGTGGTGACGGCGAAGACGANCGCTGGCCGTGCCGGCTGGGTCGGAGGCGGTGATGGTGAAGAACCTGTACGTCTCGTGTGACCCTTACATGCGTGGCCGGATGACCCGTCACGAGGTGCCCAGCTACGTTCCCGACTACGTACCAGGAGAGGTTATCACTAATTGTGGCGTGATGAAGGTGGTATCATCTGGGCACCCGGATTTCAAGGATGGAGACCTTGTTTGGGGAGTAACCGGATGGGAAGAATACAACCTGGTTAACAATNCCAAGCCTTATTTGCATAAGATCAATTACCCTGAATTTTCTCTATCTTACTACACCGGTGTTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSR3067A             [                                 AATGGCGGCAGTGGTGACCAACAGGAGGGTGATCCTGAAGAGGTACGTGACAGGGCTCCCATCGGAGGACGACATGGAGGTGGTGACGGCGAAGA GAACGCTGGCCGTGCCGGCTGGGTCGGAGGCGGTGATGGTGAAGAACCTGTACGTCTCGTGTGACCCTTACATGCGTGGCCGGATGACCCGTCACGAGGTGCCCAGCTACGTTCCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU031332             [                                                                                                                                                                                                                                                                                                                  ACCCGGATTTCAAGGATGGAGACCTTGTTTGGGGAGTAACCGGATGGGAAGAATACACCCTGGTTAACAATCCCAAGCCTTATTTGCATAAGATCAATTACCCTGAATTTCCTCTATCTTACTACACCGGTGTTCTAGGAATAGCTGGGCTTACTGCCTATGGTGGGTTCTTTGAGGTCTCCAAGCCTAAGAAAGGCGACTATGTTTTCGTCTCCGCGGCATCCGGTGCCGTAGTCAAGCTGCTCAAAACTAAGTTTGGCTTTCATGACGCGTTCAACTACAAGAAGGAGCTGGACCTGGAGGGAGCCCTTAAAAGGTGCTTCCCGGACGGCATCGACATCTACTTTGATAACGTGGGTGGTGCAATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGATATGTGGGATGATCTCGCAATATAACCTGGAGCGGCCAGACGGGGTGCGGAACCTCTTCTACTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTANATTGCAATATACCACCGGTA TGAGAA GGAGATGGCAGGATACCTGAGGGAA GGAAANGTGGTGTATGTGGAGGACATCGTTGAAGGGCTCGAGGCGGCACCGGNAGCTCTCATNGGGCTATTCANTGGCCGAAATGTCGGNAAGCAACTGGGTCACCATT                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSS14503A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCTCAAAACTAAGTTTGGCTTTCATGACGCGTTCAACTACAAGAAGGAGCTGGACCTGGAGGGAGCCCTTAAAAGGTGCTTCCCGGACGGCATCGACATCTACTTTGATAACGTGGGTGGTGCAATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGATATGTGGGATGATCTCGCAATATAACCTGGAGCGGCCAGACGGGGTGCGGAACCTCTTCTACTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTACATTGCAATATACCACCGGTATTGAGAAGGGAGATGGCAGGATACCTGAGGGAAGGGAAAGGTG                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU078061             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTTCCCGGACGGCATCGACATCTACTTTGATAACGTGGGTGGTGCAATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGATATGTGGGATGATCTCGCAATATAACCTGGAGCGGCCAGACGGGGTGCGGAACCTCTTCTACTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTACATTGCAATATACCACCGGTA TGAGAA GGAGATGGCAGGATACCTGAGGGAA GGAAAGGTGGTGTATGTGGAGGACATCGTTGAGGGGCTCGAGGCGGCACCGGCAGCTCTCATTGGGCTATTCACTGGCCGCAATGTCGGCAAGCAGCT GGTCACCATTGCACGGGAGTGATGTCGTTGGTTGCATTGGTATGTACTACCTCTGTCCCGAAATATTACAATTTTTAGCTACGAATCTGGACATATAGGTGACCAGATTCATAGCTAAAAATTGCTATATTTTGGGACGGAGGTAGTACGTACTAACCATACTTATTTATGAAATCTGAAATGGATGTCTTGTTTGTTTTGTCGGGTTCAGAAATATGAGATAAAATATTGTGCCGGGCTAAAAAAAAAAAAA                                          ]
[+] EMBL AU031333             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGTCGTTGGTTGCATTGGTATGTACTNCCTCTGTCCCGAAATNTTACAATTTTTAGCTACGAATCTGGNCATNTAGGTGACCAGATTCATAGCTAAAAATTGCTATATTTTGGGACGGAGGTAGTACGTACTANCCATACTTATTTATGAAATCTGAAATGGATGTCTTGTTTGTTTTGTCGGGTTCAGAAATNTGNGATAAAATATTGTGCCGGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9881#0 ACGTGATCAGAAGCAAAGCTAGCGTGCGTTTGCAATGGCGGCAGTGGTGACCAACAGGAG GGTGATCCTGAAGAGGTACGTGACAGGGCTCCCATCGGAGGACGACATGGAGGTGGTGAC GGCGAAGAGANCGCTGGCCGTGCCGGCTGGGTCGGAGGCGGTGATGGTGAAGAACCTGTA CGTCTCGTGTGACCCTTACATGCGTGGCCGGATGACCCGTCACGAGGTGCCCAGCTACGT TCCCGACTACGTACCAGGAGAGGTTATCACTAATTGTGGCGTGATGAAGGTGGTATCATC TGGGCACCCGGATTTCAAGGATGGAGACCTTGTTTGGGGAGTAACCGGATGGGAAGAATA CANCCTGGTTAACAATCCCAAGCCTTATTTGCATAAGATCAATTACCCTGAATTTCCTCT ATCTTACTACACCGGTGTTCTTGGAATAGCTGGGCTTACTGCCTATGGTGGGTTCTTTGA GGTCTCCAAGCCTAAGAAAGGCGACTATGTTTTCGTCTCCGCGGCATCCGGTGCCGTAGT CAAGCTGCTCAAAACTAAGTTTGGCTTTCATGACGCGTTCAACTACAAGAAGGAGCTGGA CCTGGAGGGAGCCCTTAAAAGGTGCTTCCCGGACGGCATCGACATCTACTTTGATAACGT GGGTGGTGCAATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGAT ATGTGGGATGATCTCGCAATATAACCTGGAGCGGCCAGACGGGGTGCGGAACCTCTTCTA CTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTACATTGCAATATA CCACCGGTATGAGAAGGAGATGGCAGGATACCTGAGGGAAGGAAAGGTGGTGTATGTGGA GGACATCGTTGAAGGGCTCGAGGCGGCACCGGNAGCTCTCATNGGGCTATTCANTGGCCG AAATGTCGGNAAGCAACTGGGTCACCATTGCACGGGAGTGATGTCGTTGGTTGCATTGGT ATGTACTACCTCTGTCCCGAAATATTACAATTTTTAGCTACGAATCTGGACATATAGGTG ACCAGATTCATAGCTAAAAATTGCTATATTTTGGGACGGAGGTAGTACGTACTAACCATA CTTATTTATGAAATCTGAAATGGATGTCTTGTTTGTTTTGTCGGGTTCAGAAATATGAGA TAAAATATTGTGCCGGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)