These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1000 fasta sequence [ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCCGCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTCGGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG] [+] EMBL AK058882 [ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCCGCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTCGGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG] consensusID : consensus_9897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 368 fasta sequence [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA-CTGGTACGGCCCGCTCGCCGTCTAC-TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC] [+] EMBL AU108098 [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA CTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCG CGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC] [+] EMBL AU062525 [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGG GACCGNCGA CTGGTACGGCCCGCTCGCCGTCTACTTGGGGTCG CACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGC CCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGNTCCCGTNATCCCAGTTGGCNGCCG ] [+] EMBL AU063190 [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTNGTCGTGTCCTGCCTCGCCGCGCCGG NAATGCCGA CTGGTACGGCCCGCTCGCNGTCTAC TNGGGTCGCCACAAGGACTACGATGGCTCCCTGAGAGAGGCCTGCAACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGTCTCGANATCTCCGGCCANCCGGTCG ] [+] EMBL AB027426 [ ATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA CTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGA ] [+] EMBL C29113 [ ATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGGAACGG CGANCTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGANGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGNCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGC CCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCG ] [+] EMBL AU161108 [ CGGCGACGGCCGA NTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCG CGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9897#0 ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCC 60 consensus_9897#1 ----------------------------------ATATGATGGGCCTCCTG-----AGCT 21 * **** ** ***** *** consensus_9897#0 GCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTC 120 consensus_9897#1 ----TGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGACTGGTACG-- 75 ******** ***** * ******** **** ** ****** * **** consensus_9897#0 GGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAG---GAGGGCTCGTTGCGCGAGGCC 177 consensus_9897#1 -GCCCGCTCGCCGTCTACTGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCC 134 *** ********* * ****** *********** ******** ** * ****** consensus_9897#0 TGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAG 237 consensus_9897#1 TGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTC 194 ************** ******* **** *************** ************* consensus_9897#0 CGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATC 297 consensus_9897#1 AAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATC 254 ****************** ************************************** consensus_9897#0 AAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAG 357 consensus_9897#1 AAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGG 314 ********************************************************** * consensus_9897#0 TACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTAC 417 consensus_9897#1 TACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC------ 368 ************** ************ ************* ************ consensus_9897#0 CTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATC 477 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 GACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCAC 537 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 GGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAG 597 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 GCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAG 657 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 TGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACG 717 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 GTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGAT 777 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 CTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATC 837 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 TGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATC 897 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 AATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATT 957 consensus_9897#1 ------------------------------------------------------------ consensus_9897#0 CGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG 1000 consensus_9897#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||