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Oryza sativa
cluster # 9897 cluster # 9897       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9897#0 length = 1000 sequences # 1  
consensus_9897#1 length = 368 sequences # 6  

consensusID : consensus_9897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1000
fasta sequence
                              [ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCCGCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTCGGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG]

[+] EMBL AK058882             [ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCCGCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTCGGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG]


>consensus_9897#0 ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCC GCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTC GGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAGGAGGGCTCGTTGCGCGAGGCCTGC GACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAGCGC GGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAG CACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAGTAC TCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTACCTC GGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATCGAC TTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCACGGC CGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAGGCG GCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGC ACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTG TTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGATCTC TACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATCTGG GACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAAT CTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATTCGA ATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG



consensusID : consensus_9897#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 368
fasta sequence
                              [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA-CTGGTACGGCCCGCTCGCCGTCTAC-TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC]

[+] EMBL AU108098             [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA CTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCG CGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC]
[+] EMBL AU062525             [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGG GACCGNCGA CTGGTACGGCCCGCTCGCCGTCTACTTGGGGTCG CACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGC CCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGNTCCCGTNATCCCAGTTGGCNGCCG                       ]
[+] EMBL AU063190             [ATATGATGGGCCTCCTGAGCTTGCTGCTCGTNGTCGTGTCCTGCCTCGCCGCGCCGG NAATGCCGA CTGGTACGGCCCGCTCGCNGTCTAC TNGGGTCGCCACAAGGACTACGATGGCTCCCTGAGAGAGGCCTGCAACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGTCTCGANATCTCCGGCCANCCGGTCG                                                                                                                                      ]
[+] EMBL AB027426             [  ATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGA CTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGA  ]
[+] EMBL C29113               [  ATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGGAACGG CGANCTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGANGGCTCCCTGAGAGAGGCCTGCNACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGNCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGC CCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCG                                                        ]
[+] EMBL AU161108             [                                                      CGGCGACGGCCGA NTGGTACGGCCCGCTCGCCGTCTAC TGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCG CGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC]


>consensus_9897#1 ATATGATGGGCCTCCTGAGCTTGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGA CGGCCGACTGGTACGGCCCGCTCGCCGTCTACTGGGGTCGCCACAAGGACTACGAGGGCT CCCTGAGAGAGGCCTGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCG TCTTCGGCTACGTCAAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCG TCGGCGCCGACATCAAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCG GCCAGGGCGGCGGGTACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACC TCTGGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9897#0      ACATACACATAACGTGTGCGTTGCTGCAACATGAAGATGAAGGCTCTCCTCCCCGTAGCC 60
consensus_9897#1      ----------------------------------ATATGATGGGCCTCCTG-----AGCT 21
                                                        * **** **  *****      *** 

consensus_9897#0      GCCATGCTGCTCCTCGTCTCCGGCCAGCTCGCCGCCCCGGTCACCGCCGACGGCTACGTC 120
consensus_9897#1      ----TGCTGCTCGTCGTCGTGTCCTGCCTCGCCGCGCCGGCGACGGCCGACTGGTACG-- 75
                          ******** *****     *   ******** ****  ** ****** * ****  

consensus_9897#0      GGCCAGCTCGCCGTGTTCTGGGGCCGCCACAAGGAG---GAGGGCTCGTTGCGCGAGGCC 177
consensus_9897#1      -GCCCGCTCGCCGTCTACTGGGGTCGCCACAAGGACTACGAGGGCTCCCTGAGAGAGGCC 134
                       *** ********* * ****** ***********    ********  ** * ******

consensus_9897#0      TGCGACACCGGCCGTTACAACATCGTCGTCATCACCTTCTACAACGTCTTCGGCTACCAG 237
consensus_9897#1      TGCGACACCGGCCGCTACAACACCGTCATCATCACCTTCTACAGCGTCTTCGGCTACGTC 194
                      ************** ******* **** *************** *************   

consensus_9897#0      CGCGGCAGGTACGGCCTCGACTTCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATC 297
consensus_9897#1      AAGGGCAGGTACGGCCTCGACATCTCCGGCCACCCGGTCGCCGCCGTCGGCGCCGACATC 254
                         ****************** **************************************

consensus_9897#0      AAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGAG 357
consensus_9897#1      AAGCACTGCCAGTCCAAGGGCGTCCAGGTCCTCCTCTCCATCGGCGGCCAGGGCGGCGGG 314
                      ********************************************************** *

consensus_9897#0      TACTCGCTCCCGTCCTCCCAGTCGGCCTCCGACGTCGCCGATAACCTCTGGAACGCCTAC 417
consensus_9897#1      TACTCGCTCCCGTCATCCCAGTCGGCCGCCGACGTCGCCGACAACCTCTGGAAC------ 368
                      ************** ************ ************* ************      

consensus_9897#0      CTCGGCGGCCGCCGCGCCGGCGTGCCCCGCCCCTTCGGCGACGCCGTCGTGGACGGCATC 477
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      GACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGAGCAGCTTGCCCGGCAGCTGCAC 537
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      GGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGCCGGATGGAG 597
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      GCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAG 657
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      TGCACCATGTTCCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACG 717
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      GTGTTCCTGACGGTGGTGGCGTCGCCGGAGCAGGACGAGGGGTACATGTTCCAGAAGGAT 777
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      CTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGGATCGCCATC 837
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      TGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATC 897
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      AATCTCTACCTGCTATATATCTCTCTCAATATATGTAATGTAATGTAATGTAATAATATT 957
consensus_9897#1      ------------------------------------------------------------
                                                                                  

consensus_9897#0      CGAATAAAATGAGGTCACAAATTATATTATAAATATGGATCAG 1000
consensus_9897#1      -------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)