These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence [TTTTTAATCCTCTTCTTCCCCGGCCCATGCATATTCTCTCTGCTTTAATGGTGTGAAATTTCAGAACAAGAATCTAGTTTCCGCATACAGAGTTCCAGAAATTTCCGACTGTTCATCTCATCGATCATCCGCGATTCTTTTTTTAGTTTTTGATGGTGATCAGCCACACCGCTAGCTAGTTGACACATGTATGCAGTAGCAATATTTGTTAGCTGAAAAGGAAGCAAGGAGGAAAGCAGCAAATCAGCTTTGTTGCCAAGCTGCTTGGCAGAGAGACAAAGTAATTGACCATGGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCCTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGATCAGACAAGAAGATGGCAATGAAGTACGACGTGCCGGTGAAGAGGCTGGTGTACCGGCCGTCGGCGATGCAGGCGGCGGTGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAACTGCACCAGCCAACAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTCAGAGATTCTTGGGACTTAGATATCCTGACATGAGCATGTTGATCTGAAAGTTTAACTGCATATAGAATCTTCAGAAAGGGATTAA] [+] EMBL AK068049 [TTTTTAATCCTCTTCTTCCCCGGCCCATGCATATTCTCTCTGCTTTAATGGTGTGAAATTTCAGAACAAGAATCTAGTTTCCGCATACAGAGTTCCAGAAATTTCCGACTGTTCATCTCATCGATCATCCGCGATTCTTTTTTTAGTTTTTGATGGTGATCAGCCACACCGCTAGCTAGTTGACACATGTATGCAGTAGCAATATTTGTTAGCTGAAAAGGAAGCAAGGAGGAAAGCAGCAAATCAGCTTTGTTGCCAAGCTGCTTGGCAGAGAGACAAAGTAATTGACCATGGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCCTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGATCAGACAAGAAGATGGCAATGAAGTACGACGTGCCGGTGAAGAGGCTGGTGTACCGGCCGTCGGCGATGCAGGCGGCGGTGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAACTGCACCAGCCAACAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTCAGAGATTCTTGGGACTTAGATATCCTGACATGAGCATGTTGATCTGAAAGTTTAACTGCATATAGAATCTTCAGAAAGGGATTAA] consensusID : consensus_9899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [NGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCTTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGTACGTACACACCTTCATCTTCACCTGCTTCATCATGCATCTTGGTGATCCTTCCAAAAGTCGATCGGATTCCATTAATTGATTTTCATGCATGCAGGACCAGACAAGAAGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTTCGG-GTCTGCGACTTCTCCCANAACACCTGCGACTGTGGCGCCACCAATTGNACCAGCCAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACTAGATATGCTTAAGGATGTCATTGTACCTGANACGGGCATGTTGATATCTGAATGTTTAACTGCATATAGAATCTTCAGAAAGGGATTAANTCTTGATCTACCAGTTCCACAAACAAAAA] [+] EMBL C72936 [NGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCTTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGTACGTACACACCTTCATCTTCACCTGCTTCATCATGCATCTTGGTGATCCTTCCAAAAGTCGATCGGATTCCATTAATTGATTTTCATGCATGCAGGACCAGACAAGAAGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTTCGG GTCTGCGA ] [+] EMBL AU101198 [ GTACGTACACACCTTCATCTTNACCTGCTTCATNATGCATCTTGGTNATCCTTCCAAAAGTCGATCGGATTCCATTAATTGATTTTCATGCATGCAGGACCAGACAAGAAGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGT NTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTG TACGCCATCGACTGCAACATCCCCGGCAAGCC TTCGGCGTCTGCGCCTTCTCCCANAACACCTGCGACTGTGGCGCCACCAATTGNACCAGCCAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACTAGATATGCTTAAGGATGTCATTGTACCTGANACGGGCATGTTGATATCTGAATGTTTAACTGCATATAGAATCTTCAGAAAGGGATTAANTCTTGATCTACCAGTTCCACAAACAAAAA] consensusID : consensus_9899#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 672 fasta sequence [TCAGTGTTCTTCCATTCTTTCCAGAGAGACAAAGTAATTGACCATGGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCTTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGACCAGACAAGAAGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGNCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGCGTCTGCGCCTTCTCC-CCCCACACCTGCGACTGTGGCGCCACCAATTGCACCAGCCAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACTAGATATGCTTAAGGATGTCATTGTTCCTGACACGGGCATGTTGATATCTGAATGTTTAACTGCATATAGAATCTTCAGAAAGGGATTAATTCTTGATCTACCAGTTCCCCAAAAAAAAAAAAAA] [+] EMBL CF338725 [TCAGTGTTCTTCCATTCTTTCCAGAGAGACAAAGTAATTGACCATGGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCTTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGACCAGACAAGAAGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGNCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGCGTCTGCGCCTTCTCC CCCCACACCTGCGACTGTGGCGCCACCAATTGCACCAGCCAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACTAGATATGCTTAAGGATGTCATTGTTCCTGACACGGGCATGTTGATATCTGAATGTTTAACTGCA ] [+] EMBL CF338867 [TCAGTGTTCTTCCATTCTTTCCAGAGAGACAAAGTAATTGACCATGGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTCGCCATGGTCGTCTTCCTCATCTTCAGCTCCTCCTTCCTCCAGGCCGCCCAAGGACCAGACAAGAAGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGC ] [-] EMBL CA760130 [ GGACGAGACAAGGGGATGGTGATGAAGTACGACGTGCCGGTGAAGAGGTTGATGTACCGGCCGGCGGCGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGG CTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGNTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGGGTNTGCGCCTTCTCCNCCCCACACCTGCGACTGTGGCGCCACCAATTGCACCAGCCAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTTTGATGCGATTGCAAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACTAGATATGCTTAAGGATGTCATTGTTCCTGACACGGGCATGTTGATATCTGAATGTTTAACTGCATATAGAATCTTCAGAAAGGGATTAATTCTTGATCTACCAGTTCCCCAAAAAAAAAAAAAA] consensusID : consensus_9899#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CATCTTGGTGATCCTTCAAGTCGGTTCTGACTTCTCAATTGATATTCATGCATGCAGGATCAGACAAGAAGATGGCAATGAAGTACGACGTGCCGGTGAAGAGGCTGGTGTACCGGCCGTCGGCGATGCAGGCGGCGGTGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAACTGCACCAGCCAACAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTCAGAGATTCTTGGGACTTAGATATCCTGACATGAGCATGTTGATCTGAAAGTTTAACTGCATATAGAATCTTCAGAAAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA755945 [CATCTTGGTGATCCTTCAAGTCGGTTCTGACTTCTCAATTGATATTCATGCATGCAGGATCAGACAAGAAGATGGCAATGAAGTACGACGTGCCGGTGAAGAGGCTGGTGTACCGGCCGTCGGCGATGCAGGCGGCGGTGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTGCGCGTCGTCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCGGCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAACTGCACCAGCCAACAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATGCGATTGCAAACGTATTAAGTTTTTTCAGAGATTCTTGGGACTTAGATATCCTGACATGAGCATGTTGATCTGAAAGTTTAACTGCATATAGAATCTTCAGAAAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9899#0 TTTTTAATCCTCTTCTTCCCCGGCCCATGCATATTCTCTCTGCTTTAATGGTGTGAAATT 60 consensus_9899#3 ------------------------------------------------------------ consensus_9899#1 ------------------------------------------------------------ consensus_9899#2 ------------------------------------------------------------ consensus_9899#0 TCAGAACAAGAATCTAGTTTCCGCATACAGAGTTCCAGAAATTTCCGACTGTTCATCTCA 120 consensus_9899#3 ------------------------------------------------------------ consensus_9899#1 ------------------------------------------------------------ consensus_9899#2 ------------------------------------------------------------ consensus_9899#0 TCGATCATCCGCGATTCTTTTTTTAGTTTTTGATGGTGATCAGCCACACCGCTAGCTAGT 180 consensus_9899#3 ------------------------------------------------------------ consensus_9899#1 ------------------------------------------------------------ consensus_9899#2 ------------------------------------------------------------ consensus_9899#0 TGACACATGTATGCAGTAGCAATATTTGTTAGCTGAAAAGGAAGCAAGGAGGAAAGCAGC 240 consensus_9899#3 ------------------------------------------------------------ consensus_9899#1 --------------------NGCAAAAGATCCTCATGTCTCCATCTCTCTCACCGGCCTC 40 consensus_9899#2 ------------------------------------------------------------ consensus_9899#0 AAATCAGCTTTGTTGCCAAGCTGCTTGGCAGAGAGACAAAGTAATTGACCATGGCAAA-A 299 consensus_9899#3 ------------------------------------------------------------ consensus_9899#1 GCCATGGTCGTCTTCCTCATCTTCAGCTCCTCCTTCCTCCA-GGCCGCCCAAGGTACGTA 99 consensus_9899#2 ---TCAGTGTTCTTCCATTCTTTCCAGAGAGACAAAGT----AATTGACCATGGCAAA-A 52 consensus_9899#0 GATCCTCATGTCTCCATCTCTCTCACCG-GCCTCGCCATGGTCGTCCTCCTCATCT-TCA 357 consensus_9899#3 ------------------------------CATCTTGGTGATCCTTCAAGTCGGTT-CTG 29 consensus_9899#1 CACACCTTCATCTTCACCTGCTTCATCATGCATCTTGGTGATCCTTCCAAAAGTCGATCG 159 consensus_9899#2 GATCCTCATGTCTCCATCTCTCTCACCG-GCCTCGCCATGGTCGTCTTCCTCATCT-TCA 110 * ** ** ** * consensus_9899#0 GCTCC--TCCTTCCTCCAGGCCGCCCA-AGGATCAGACAAGAAGATGGCAATGAAGTACG 414 consensus_9899#3 ACTTC--TCAATTGATATTCATGCATGCAGGATCAGACAAGAAGATGGCAATGAAGTACG 87 consensus_9899#1 GATTCCATTAATTGATTTTCATGCATGCAGGACCAGACAAGAAGATGGTGATGAAGTACG 219 consensus_9899#2 GCTCCTCCTTCCTCCAGGCCGCCCA---AGGACCAGACAAGAAGATGGTGATGAAGTACG 167 * * * **** *************** ********** consensus_9899#0 ACGTGCCGGTGAAGAGGCTGGTGTACCGGCCGTCGGCGATGCAGGCGGCGGTGATCGGCA 474 consensus_9899#3 ACGTGCCGGTGAAGAGGCTGGTGTACCGGCCGTCGGCGATGCAGGCGGCGGTGATCGGCA 147 consensus_9899#1 ACGTGCCGGTGAAGAGGTTGATGTACCGGCCG---------------GCGGCGATCGGCA 264 consensus_9899#2 ACGTGCCGGTGAAGAGGTTGATGTACCGGCCG---------------GCGGCGATCGGCA 212 ***************** ** *********** **** ******** consensus_9899#0 CGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGC-TGCCGGTGCTGCGCGTCG 533 consensus_9899#3 CGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGC-TGCCGGTGCTGCGCGTCG 206 consensus_9899#1 CGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGC-TGCCGGTGCTGCGCGTCG 323 consensus_9899#2 CGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGNCTGCCGGTGCTGCGCGTCG 272 **************************************** ****************** consensus_9899#0 TCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCC 593 consensus_9899#3 TCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCC 266 consensus_9899#1 TCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGCTACGCCATCGACTGCAACATCCCC 383 consensus_9899#2 TCGAACGCGAGCAGCTGCGTGGACACCCGGTGCTGCTACGCCATCGACTGCAACATCCCC 332 ************************** * ****************************** consensus_9899#0 GGCAAGCCCTTCGGCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAAC 653 consensus_9899#3 GGCAAGCCCTTCGGCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAAC 326 consensus_9899#1 GGCAAGCCCTTTCGGGTCTGCGACTTCTCCCANAACACCTGCGACTGTGGCGCCACCAAT 443 consensus_9899#2 GGCAAGCCCTTCGGCGTCTGCGCCTTCTCCCCCCACACCTGCGACTGTGGCGCCACCAAT 392 *********** * ******* ****** * **************** ******** consensus_9899#0 TGCACCAGCCAACAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATC 713 consensus_9899#3 TGCACCAGCCAACAGCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATC 386 consensus_9899#1 TGNACCAGCCA---GCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATC 500 consensus_9899#2 TGCACCAGCCA---GCAGCCATGACCACACACCTCTTGCTGCTGCTAATTCAATTCGATC 449 ** ******** ********************************************** consensus_9899#0 TCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATGCGATTGC 773 consensus_9899#3 TCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATGCGATTGC 446 consensus_9899#1 TCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTCTGATGCGATTGC 560 consensus_9899#2 TCTTCCATGATCAATATGCATATGCGCCTGAATTATTCAACGGTTTTCTGATGCGATTGC 509 ***************** * ************* ******* ****************** consensus_9899#0 AAACGTATTAAGTTTTTT----CAGAGATTCTTGGGACTTAGATAT-------------- 815 consensus_9899#3 AAACGTATTAAGTTTTTT----CAGAGATTCTTGGGACTTAGATAT-------------- 488 consensus_9899#1 AAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACT-AGATATGCTTAAGGATGTCA 619 consensus_9899#2 AAACGTATTAAGTTTTTTTTTTCAGAGATTCTTGGGACT-AGATATGCTTAAGGATGTCA 568 ****************** ***************** ****** consensus_9899#0 -----CCTGACATGAGCATGTTGAT--CTGAAAGTTTAACTGCATATAGAATCTTCAGAA 868 consensus_9899#3 -----CCTGACATGAGCATGTTGAT--CTGAAAGTTTAACTGCATATAGAATCTTCAGAA 541 consensus_9899#1 TTGTACCTGANACGGGCATGTTGATATCTGAATGTTTAACTGCATATAGAATCTTCAGAA 679 consensus_9899#2 TTGTTCCTGACACGGGCATGTTGATATCTGAATGTTTAACTGCATATAGAATCTTCAGAA 628 ***** * * ********** ***** *************************** consensus_9899#0 AGGGATTAA--------------------------------------------------- 877 consensus_9899#3 AGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 601 consensus_9899#1 AGGGATTAANTCTTGATCTACCAGTTCCACAAACAAAAA--------------------- 718 consensus_9899#2 AGGGATTAATTCTTGATCTACCAGTTCCCCAAAAAAAAAAAAAA---------------- 672 ******* consensus_9899#0 -------- consensus_9899#3 NNNNNNNN 609 consensus_9899#1 -------- consensus_9899#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||