These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACATGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTATCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGGGCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCTGCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCCCTTGAGTTCGGCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC] [+] EMBL CA760184 [TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACATGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTATCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGGGCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCTGCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCCCTTGAGTTCGGCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC] consensusID : consensus_990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [TTTTTTGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCCGCCCCGAACCTCTTCTTATCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATCGGGTGCTGCGGCGCGAGGTCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCGTGTTTCTCGCCGACCTCCTTCTTCACGATGCTGCCGCTCGCCATCGACGCCAAGCTCTTCCTCTTCTTGAGCTCCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCTTGGTCTCGGCTCCTGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAGGACCCGCCGTTCGCCTTAAGTTAG] [+] EMBL CA760185 [TTTTTTGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCCGCCCCGAACCTCTTCTTATCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATCGGGTGCTGCGGCGCGAGGTCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCGTGTTTCTCGCCGACCTCCTTCTTCACGATGCTGCCGCTCGCCATCGACGCCAAGCTCTTCCTCTTCTTGAGCTCCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCTTGGTCTCGGCTCCTGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAGGACCCGCCGTTCGCCTTAAGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_990#0 TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACA 60 consensus_990#1 ------------------------------------------------------------ consensus_990#0 TGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAA 120 consensus_990#1 ------------------------------------------TTTTTTGAACCAAAACAA 18 ** ************* consensus_990#0 GCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGAC 180 consensus_990#1 GCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGAC 78 ************************************************************ consensus_990#0 GAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCA 240 consensus_990#1 GGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCA 138 * ********************************************************** consensus_990#0 AGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGC 300 consensus_990#1 AGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGC 198 ************************************************************ consensus_990#0 AAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCT 360 consensus_990#1 AAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCT 258 ************************************************************ consensus_990#0 AGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTG 420 consensus_990#1 AGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTG 318 ********* ************************************************** consensus_990#0 AGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTA 480 consensus_990#1 AGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCCGCCCCGAACCTCTTCTTA 378 **************** *************** *************************** consensus_990#0 TCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGG 540 consensus_990#1 TCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATCGGGTGCTGCGGCGCGAGG 438 *** ******************** ****** ******************* **** *** consensus_990#0 GCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCT 600 consensus_990#1 TCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCG-TGTTTCTCGCCGACC-T 496 * ******** * ******** ** ** ** * ******* ** * ********* * consensus_990#0 GCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCC--CTTGAGTT 658 consensus_990#1 CCTTCTTCA-CGATGCTGCCGCTCGC-CATCGACGCCA-AGCTCTTCCTCTTCTTGAGCT 553 ******** * * *********** * * * ** * ******* * * ****** * consensus_990#0 CGGCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC----------------------- 695 consensus_990#1 CCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCTTGGTCTCGGCTCC 613 * * * ** * ** * * * consensus_990#0 ------------------------------------------------------------ consensus_990#1 TGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAGGACCCGCCGTTCG 673 consensus_990#0 ----------- consensus_990#1 CCTTAAGTTAG 684 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||