These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1366 fasta sequence [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT-GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA-TTCTTGC-TGACTCCGCC-TC-TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATC-ACAACCAAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTAC-TGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCT-CCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATG-ATAAAAGTG-CCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCCAAAAAAAAAA] [+] EMBL AK103971 [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA TTCTTGC TGACTCCGCC TC TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATC ACAACCAAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTAC TGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCT CCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATG ATAAAAGTG CCAGAGATTTTGTTGTATCAGTAATTCATCGC ] [+] EMBL AK073269 [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA TTCTTGC TGACTCCGCC TC TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATC ACAACCAAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTAC TGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCT CCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATG ATAAAAGTG CCAGAGATTTTG ] [+] EMBL BP184945 [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGT ] [+] EMBL CA998930 [ GCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCTNGGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTC ] [+] EMBL CF305622 [ ggTGAGGGAATCCATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAATAACTTGATATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA TTCTTGC TGACTCCGCC TC TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCANAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGC ] [+] EMBL BM419675 [ GCCANCAGGTATTTCTTGCGTGACTCCGCCTTCGTGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATCTACAACCCAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACNGGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTNTTTTGTGTGAGGCATGTATAAAAGTGCCCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCCAAAAAAAAAA] consensusID : consensus_9901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TCCTTTTTTTTGTTGCTGTCATTACAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCAAAGTCAAACACCTTTCTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGAGGGCTCAGTAATGATAAATTTGCTGTTTTCTGAAGAAGTCAACAGCCTGAAGGATTTG] [-] EMBL BE230481 [TCCTTTTTTTTGTTGCTGTCATTACAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCAAAGTCAAACACCTTTCTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGAGGGCTCAGTAATGATAAATTTGCTGTTTTCTGAAGAAGTCAACAGCCTGAAGGATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9901#0 CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCT 60 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 CTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGT 120 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 CTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGG 180 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 CATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCAC 240 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 CAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGA 300 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 GGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATC 360 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 GGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCG 420 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 TGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGC 480 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 ACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGA 540 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 CTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGAC 600 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 AAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCT 660 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 TCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGC 720 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 AACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATAT 780 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 GACAAGATTAGCAGCTCTTGCTGGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAA 840 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 CCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTG 900 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 GGGCCAGCAGGTATTCTTGCTGACTCCGCCTCTGAAAGTAAACGAAGGGGACAATGTTAA 960 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 AGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCAC 1020 consensus_9901#1 ------------------------------------------------------------ consensus_9901#0 ATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATCACAACCAAGATTTACTT 1080 consensus_9901#1 ----------------------------------------------TCCTTTTTTTTGTT 14 ** *** ** consensus_9901#0 AGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGC 1140 consensus_9901#1 GCTGTCATTACAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGC 74 * ************************************************* consensus_9901#0 TACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTT 1200 consensus_9901#1 TACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTT 134 ************************************************************ consensus_9901#0 GGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCG 1260 consensus_9901#1 GGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCG 194 ************************************************************ consensus_9901#0 AGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCAT 1320 consensus_9901#1 AGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCAT 254 ************************************************************ consensus_9901#0 CGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCCAAAAAAAAAA-------------- 1366 consensus_9901#1 CGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCA 314 *********************************** * * consensus_9901#0 ------------------------------------------------------------ consensus_9901#1 AAGTCAAACACCTTTCTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGAGGGC 374 consensus_9901#0 ------------------------------------------------------ consensus_9901#1 TCAGTAATGATAAATTTGCTGTTTTCTGAAGAAGTCAACAGCCTGAAGGATTTG 428 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||