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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1366 fasta sequence
[CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT-GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA-TTCTTGC-TGACTCCGCC-TC-TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATC-ACAACCAAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTAC-TGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCT-CCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATG-ATAAAAGTG-CCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCCAAAAAAAAAA]
[+] EMBL AK103971 [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA TTCTTGC TGACTCCGCC TC TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATC ACAACCAAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTAC TGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCT CCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATG ATAAAAGTG CCAGAGATTTTGTTGTATCAGTAATTCATCGC ]
[+] EMBL AK073269 [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA TTCTTGC TGACTCCGCC TC TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATC ACAACCAAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTAC TGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCT CCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATG ATAAAAGTG CCAGAGATTTTG ]
[+] EMBL BP184945 [CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCTCTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGTCTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGGCATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGT ]
[+] EMBL CA998930 [ GCCAGGAAGGTGTACGCCGTGGAGGCCACCAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGAGGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATCGGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCTNGGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTC ]
[+] EMBL CF305622 [ ggTGAGGGAATCCATGTTTGATTCTGTCATTTGTGCGCGTGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGCACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAATAACTTGATATTGCTATGCATGACTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGACAAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCTTCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGCAACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATATGACAAGATTAGCAGCTCTTGCT GGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAACCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTGGGGCCAGCAGGTA TTCTTGC TGACTCCGCC TC TGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCANAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGC ]
[+] EMBL BM419675 [ GCCANCAGGTATTTCTTGCGTGACTCCGCCTTCGTGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATCTACAACCCAGATTTACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACNGGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTNTTTTGTGTGAGGCATGTATAAAAGTGCCCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCCAAAAAAAAAA]
consensusID : consensus_9901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[TCCTTTTTTTTGTTGCTGTCATTACAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCAAAGTCAAACACCTTTCTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGAGGGCTCAGTAATGATAAATTTGCTGTTTTCTGAAGAAGTCAACAGCCTGAAGGATTTG]
[-] EMBL BE230481 [TCCTTTTTTTTGTTGCTGTCATTACAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGCTACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCAAAGTCAAACACCTTTCTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGAGGGCTCAGTAATGATAAATTTGCTGTTTTCTGAAGAAGTCAACAGCCTGAAGGATTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9901#0 CCCGGCGGTGGTCGACAAGGAGGTGGACTTCGCCAACTACTTCTGCACCTACTCCTACCT 60
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 CTACCACCAGAAGGAGATGCTCTGCGACCGCGTCCGGATGGACGCCTACCACTCCGCCGT 120
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 CTTCCGCAACGCCCACCACTTCCGCGGCAAGGTGGTTCTTGATGTGGGTACCGGGAGTGG 180
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 CATCCTCGCCATCTGGAGCGCGCAGGCTGGCGCCAGGAAGGTGTACGCCGTGGAGGCCAC 240
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 CAATATGGCGGAGCACGCGCGCGAGCTCGCGCGGGCTAACGACGTCGCCGACATCGTCGA 300
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 GGTGATACAGGGGTCCATGGAGGACGTTGTGTTGCCAGAGAAAGTTGATGTCATTATATC 360
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 GGAGTGGATGGGCTACTTTCTATTGAGGGAATCGATGTTTGATTCTGTCATTTGTGCGCG 420
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 TGATCGTTGGTTGAAGCCAGACGGTGTAATGTATCCCAGTCATGCTCGGATGTGGCTAGC 480
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 ACCAATAAGGAGTGATCTGGCTGAAAATAAGATGGAAGATCTTGAGATTGCTATGCATGA 540
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 CTGGAATCTATTTGTTGAGGATACCGAGTCTTATTATGGGGTCAACATGAATGTTTTGAC 600
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 AAAGGCATACCGTGCAGAACATGAAAAATACTATCTTAAGTCTGCCATATGGAATAATCT 660
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 TCATCCAAACCAAGTTATAGGGCAAGCTGCTGTTATTAAGGAAATTGATTGCTTGACAGC 720
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 AACGGTTGATGAGATTCGAGAAGTTCGAGCACAGGTTACAATGCCAATCAAGCTGGATAT 780
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 GACAAGATTAGCAGCTCTTGCTGGATGGTTTGATGTTCATTTTCGAGGTAGTAAGCAAAA 840
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 CCCTGCAACTCAAGAAGTTGAGTTAAGCACAGCTCCTGATGTGAATGGTGGCACTCACTG 900
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 GGGCCAGCAGGTATTCTTGCTGACTCCGCCTCTGAAAGTAAACGAAGGGGACAATGTTAA 960
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 AGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCATCGGCTCATGGATATGGAGTTCAC 1020
consensus_9901#1 ------------------------------------------------------------
consensus_9901#0 ATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATCACAACCAAGATTTACTT 1080
consensus_9901#1 ----------------------------------------------TCCTTTTTTTTGTT 14
** *** **
consensus_9901#0 AGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGC 1140
consensus_9901#1 GCTGTCATTACAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGC 74
* *************************************************
consensus_9901#0 TACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTT 1200
consensus_9901#1 TACCATGTCTGAACCTTGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCTGGTGTATTT 134
************************************************************
consensus_9901#0 GGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCG 1260
consensus_9901#1 GGTTTTTAATAGAGGGCCTAATGGCCACATTGTGTAATACTACCCAGAATATGTACACCG 194
************************************************************
consensus_9901#0 AGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCAT 1320
consensus_9901#1 AGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAATTCAT 254
************************************************************
consensus_9901#0 CGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCCAAAAAAAAAA-------------- 1366
consensus_9901#1 CGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCA 314
*********************************** * *
consensus_9901#0 ------------------------------------------------------------
consensus_9901#1 AAGTCAAACACCTTTCTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGAGGGC 374
consensus_9901#0 ------------------------------------------------------
consensus_9901#1 TCAGTAATGATAAATTTGCTGTTTTCTGAAGAAGTCAACAGCCTGAAGGATTTG 428
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||