These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 686 fasta sequence [CACTCTCTTCTCTC-TCGTCTC-GCTCTCTTC-TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG-CAGTGGTGACC-GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC-TCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA-G-CAAGTGGCGTGGCTCACGGGCG-GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGG-CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT-GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTG-TTGATTATGTGATATGTCCTTTTTCTAGATTTTTGATTTAAAAA] [+] EMBL C74364 [CACTCTCTTCTCTC TCGTNTN GCTCTCTTC TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC TCCCCTCCACCAGATCCGGCCGGANGGGAGGCAGTGGTGCCTCCGCTCCAACAGATCCGGNCGGGAGGGGAGTTAACGACGACAGGAGGGGTGGCANCA G CAAGTGGCGTGGCTNATGGGCG TTGGCGGCna ] [+] EMBL AU082317 [ CTTTCTTCTCTCTTGGTCTCGGTTCTCTTCTTCTCTCTCCNTCCTTTTTNTCCCGGGCACTACCGACGGTTGGCCGCCGAAAGCGGCCANTGGTGACCGGCGCCTTCCCCTCCGCCAGATCCGGGCCATCCGGT GGA GGGA GCGGCGGCAGGAAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGA GCGGCGGCGACACCCTTCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA G CAAGTGGCGTGGCTCACGGGCG GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGG CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTG TTGATTATGTGATATGTCCTTTTTCTAGATTTTTGATTTAAAAA] [+] EMBL C73339 [ CTCTCTTCTCTC TCGTCTC GCTCTCTTC TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GNNCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGNGGCCGGACGGNAGGCGGCGGCGACACCC TCCCCTCCACCANATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGNTCCACCAG ] [+] EMBL AK059193 [ TCTTCTCTC TCGTCTC GCTCTCTTC TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC TCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA G CAAGTGGCGTGGCTCACGGGCG GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGG CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTG TTGATTATGTGATATG ] [+] EMBL CA754217 [ TCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC TCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA G CAAGTGGCGTGGCTCACGGGCG GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGNACCCCCAACCGTCTCCTTCGCTTGGCGGNNTGTG CATTGTTGATGTTTGATTCNATGA TTAATGGATG TTGATGTTTGATTCA CGATGT AACTTGTTGATG ATATTTGATTGTGGGA GCA GAATTTG GTGA TATG GATA ] [+] EMBL BI805736 [ GGGTNGCAACATGCCAAGTGGCGTGGCTCAC GGCGTGT GCGTCGACGACCTCCCCTCT CCAGATCT GCGGGAGGGGAGGTAATGGCGGC GCGGAGCCCTCCCCTCTGCC AATCCGGCGAGGAGTAGGTA CGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCC ACCGTCTCCTTCGCTTGCCGG CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTGTTTGATTAaaaaaaaaa ] consensusID : consensus_9902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGACAGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGACCCTCCCCTCTGCAAATCCGGCGA] [+] EMBL C74371 [ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGACAGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGACCCTCCCCTCTGCAAATCCGGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9902#0 CACTCTCTTCTCTCTCGTCT-CGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCAC 59 consensus_9902#1 -ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCAC 59 ******************* ************************************** consensus_9902#0 TACCGACGGTTGGCCGGCGGAGGCGGCAGTGGTGACCGCGCCCTCCCCTCCGCCAGATCC 119 consensus_9902#1 TACCGACGGTTGGCCGGCGGAGGCGGC--------------------------------- 86 *************************** consensus_9902#0 GGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAG 179 consensus_9902#1 ---------------------------GGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAG 119 ********************************* consensus_9902#0 CTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGG 239 consensus_9902#1 CTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGG 179 ************************************************************ consensus_9902#0 AGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGAC 299 consensus_9902#1 AGGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGAC 239 ************ ************************************* ********* consensus_9902#0 AGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCT 359 consensus_9902#1 AGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCT 299 ************************************************************ consensus_9902#0 CTGCCAGATCTGGCGGGAGGGGA-GGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAA 418 consensus_9902#1 CTGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGA-CCCTCCCCTCTGC-AAA 357 *********************** ****************** ************* *** consensus_9902#0 TCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTG 478 consensus_9902#1 TCCGGCGA---------------------------------------------------- 365 ******** consensus_9902#0 GGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGGC 538 consensus_9902#1 ------------------------------------------------------------ consensus_9902#0 TGTGCCATTGTTGATGTTTGATTCGATGATTTAATGATGTTTGATGTTTGATTCAGTGAT 598 consensus_9902#1 ------------------------------------------------------------ consensus_9902#0 GTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTGTTGATTATGTGATATG 658 consensus_9902#1 ------------------------------------------------------------ consensus_9902#0 TCCTTTTTCTAGATTTTTGATTTAAAAA 686 consensus_9902#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||