These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1562 fasta sequence [CGCTTCCGCCGCGGTGTTCTTCCTCCTCTCGCAGGAGAAAATTTCGCTGGTTGAATCGGAGGGAGGCAGCAATGGCCGCTCGAGCTCGGTGGCGAATCCTCGCGCTGCCGCTCGCTCTTCTCCTAGCGGTCGGGTCGTCGCCTGGCCTCGTGAGGCAGGCGTCGTCGTCGGCGGCGGCCAAGCCTCCCGTCCCCAAGGCCATCTCGGACCTGAGGGAGGCGATCGTGAAGGGGCTGGGGTTCCAGTCGGAGGAGCTCAAGGTGTCCGGGTTCGACGTGCGCGACGCGCTCGTGGGGCAGGCGGTGGCGTACGAGTTCGACATCGAGGTCGGGAGGAAGGTGGTGCCGGTGCGCCTGCTCGAGGACGTCAACCGATGGGACTTCGTCGACCTGCCCATCTTCCGGTCCCAGGCCGACGCCGACGACACGGCGCTCGCCGAGATCCGGCGTGGCAAGAGCGGGAAGCGAGCCTTCGACCCGACCCTGCCACCGTTCCAGCTCGCCGGGCCCATGGAGCTCTGGATCCAGGACGGCGACGACGTTAGGCTCGCCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAGATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAATTACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTGCGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA-AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA-TGTC-CGAGAGCGTGCTCA-CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG-CA-GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA-CGGTAAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAACCATTACAGGAAAAAGATTCATCCATAGGCAATTGTATATCTTTTTGAAAAAAA] [+] EMBL AK070672 [CGCTTCCGCCGCGGTGTTCTTCCTCCTCTCGCAGGAGAAAATTTCGCTGGTTGAATCGGAGGGAGGCAGCAATGGCCGCTCGAGCTCGGTGGCGAATCCTCGCGCTGCCGCTCGCTCTTCTCCTAGCGGTCGGGTCGTCGCCTGGCCTCGTGAGGCAGGCGTCGTCGTCGGCGGCGGCCAAGCCTCCCGTCCCCAAGGCCATCTCGGACCTGAGGGAGGCGATCGTGAAGGGGCTGGGGTTCCAGTCGGAGGAGCTCAAGGTGTCCGGGTTCGACGTGCGCGACGCGCTCGTGGGGCAGGCGGTGGCGTACGAGTTCGACATCGAGGTCGGGAGGAAGGTGGTGCCGGTGCGCCTGCTCGAGGACGTCAACCGATGGGACTTCGTCGACCTGCCCATCTTCCGGTCCCAGGCCGACGCCGACGACACGGCGCTCGCCGAGATCCGGCGTGGCAAGAGCGGGAAGCGAGCCTTCGACCCGACCCTGCCACCGTTCCAGCTCGCCGGGCCCATGGAGCTCTGGATCCAGGACGGCGACGACGTTAGGCTCGCCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAGATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAATTACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTGCGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA TGTC CGAGAGCGTGCTCA CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG CA GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA CGGTAAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAA ] [+] EMBL CB652083 [ CCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAGATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAATTACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTGCGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTG ] [-] EMBL CB652084 [ CGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA TGTC CGAGAGCGTGCTCA CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG CA GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA CGGTAAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCT ] [+] EMBL BQ907278 [ TGGTGATTGATCACACGCAGCTGGATTGT GCCCCTTCTGTCACTGAATGGGTCAGAT GCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTT CGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA TGTC AGAGAGCGTGCTCA CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG CA GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA CGGTAGATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAACCATTACAGGAAAAA ] [+] EMBL BQ907352 [ GTCCNACTTCCCGGAGTGGAAGACGAAGCCCACAGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCACTGTCACGAGAGCGTGCTCACCCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAGCCACGTTGAAGCTCCGGTTTTAAGTGAGCTGATCACCGGTAGATGACCAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCCAACTGAATAATGAATGAACGAACCNTTACAGGAAAAA ] [+] EMBL BQ906844 [ ccgATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAACCATTACAGGAAAAGGATTCATCCATAGGCAATTGTATATCTTTTTGAAAAAAA] consensusID : consensus_9908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [TGTGCCTTTGCATGAGGTAATGCACATCAGGTTANGATTCTGCCTNGTCTGAAAAGCCAGTGAAGGGACTTCAACTTGAGCGCGACCTCTCCCCAACGTACGTCAAGTGGGTTTCCGTGAGAAGAGATGCTGACGGAGAGTGAACTGTCCAACTTCCCGGAGTGGAAGACGAANCCCAAGAAGTTGAGGCCACTACGAGGTTCTTGCTCGTGTGGAGGGTGCAGCGATCCCTGAAAGGATCGCCAGTCACCTTTGAGCCGACGAGCCATGTCAGAGAGCGTGCTCACCGGAATCGATTCNAAACGGAGTGTCACCCCCCGGTTATTCACTCTGAGACATGAACTCCGTTTAAGTGACTGATCACGTAATACACGCGAATTTCTGCGCGATATATACCATACATGAAAATGTGTCGGGTAGTACTGCCACTTGTAATCCACGAATGAAGACAACATCAGAAGATCACCATAGC] [+] EMBL BI806344 [TGTGCCTTTGCATGAGGTAATGCACATCAGGTTANGATTCTGCCTNGTCTGAAAAGCCAGTGAAGGGACTTCAACTTGAGCGCGACCTCTCCCCAACGTACGTCAAGTGGGTTTCCGTGAGAAGAGATGCTGACGGAGAGTGAACTGTCCAACTTCCCGGAGTGGAAGACGAANCCCAAGAAGTTGAGGCCACTACGAGGTTCTTGCTCGTGTGGAGGGTGCAGCGATCCCTGAAAGGATCGCCAGTCACCTTTGAGCCGACGAGCCATGTCAGAGAGCGTGCTCACCGGAATCGATTCNAAACGGAGTGTCACCCCCCGGTTATTCACTCTGAGACATGAACTCCGTTTAAGTGACTGATCACGTAATACACGCGAATTTCTGCGCGATATATACCATACATGAAAATGTGTCGGGTAGTACTGCCACTTGTAATCCACGAATGAAGACAACATCAGAAGATCACCATAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9908#0 CGCTTCCGCCGCGGTGTTCTTCCTCCTCTCGCAGGAGAAAATTTCGCTGGTTGAATCGGA 60 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 GGGAGGCAGCAATGGCCGCTCGAGCTCGGTGGCGAATCCTCGCGCTGCCGCTCGCTCTTC 120 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 TCCTAGCGGTCGGGTCGTCGCCTGGCCTCGTGAGGCAGGCGTCGTCGTCGGCGGCGGCCA 180 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 AGCCTCCCGTCCCCAAGGCCATCTCGGACCTGAGGGAGGCGATCGTGAAGGGGCTGGGGT 240 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 TCCAGTCGGAGGAGCTCAAGGTGTCCGGGTTCGACGTGCGCGACGCGCTCGTGGGGCAGG 300 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 CGGTGGCGTACGAGTTCGACATCGAGGTCGGGAGGAAGGTGGTGCCGGTGCGCCTGCTCG 360 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 AGGACGTCAACCGATGGGACTTCGTCGACCTGCCCATCTTCCGGTCCCAGGCCGACGCCG 420 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 ACGACACGGCGCTCGCCGAGATCCGGCGTGGCAAGAGCGGGAAGCGAGCCTTCGACCCGA 480 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 CCCTGCCACCGTTCCAGCTCGCCGGGCCCATGGAGCTCTGGATCCAGGACGGCGACGACG 540 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 TTAGGCTCGCCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAG 600 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 ATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAAT 660 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 TACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTG 720 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 CGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCG 780 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 AAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCA 840 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 AACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACG 900 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 ATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAG 960 consensus_9908#1 ------------------------------------------------------------ consensus_9908#0 ATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTG 1020 consensus_9908#1 -TGTGCCTTTGCATGAGGTAATGCACAT-CAGGTTANGATTCTGCCTNGTCTGAAAAGCC 58 ** **** * * * * * * * ** * **** * * * consensus_9908#0 AGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGG 1080 consensus_9908#1 AGTGAAGGGACTTCAACTTG-----AGCGCGACCTCT--CCCCAACGTACGTCAAGT--G 109 ** ** ***** ** ****** ** *** ************* * consensus_9908#0 GGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGT 1140 consensus_9908#1 GGTTTCCGT--GAGAAGAGA--TGCTGACGGAGAG-TGAACTG-TCCAACTTCCCGGAGT 163 ***** ** ******** ************* ******* **************** consensus_9908#0 GGAAGACGAAGCCCAAGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTG 1200 consensus_9908#1 GGAAGACGAANCCCAAGAAGTTGAGGC--CACTACGAGGTTCTTGCTCGTGTGGAGGGTG 221 ********** *************** ******************************* consensus_9908#0 GCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCATGT 1260 consensus_9908#1 C---AGCGATCCCTGAAAGGATCGC-CAGTCAC----CTTTGAG-CCGACGAG-CCATGT 271 ******************** *** * ****** ******** ****** consensus_9908#0 CCGAGAGCGTGCTCACCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGC 1320 consensus_9908#1 CAGAGAGCGTGCTCACCGGAA-----TCGAT-TCNAA-ACGGAG------TGTCACCCCC 318 * ***************** * ***** ** ** ****** ** ** * consensus_9908#0 CGGTTTACTTCACTCTTTGAGAGCAGTTGAAGCTCCGGTTTTAAGTGAGCTGATCACGGT 1380 consensus_9908#1 CGGTTA--TTCACTCTGAGACA-----TGAA-CTCCG--TTTAAGTGA-CTGATCACG-- 365 ***** ******** ** * **** ***** ********* ********* consensus_9908#0 AAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAA 1440 consensus_9908#1 ---TAATACACG-CGAA--TTTCTGCGCGATATATACCAT-----------ACATGAAAA 408 * * * ** **** ***** *** ** ** ******** consensus_9908#0 ATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAA 1500 consensus_9908#1 -----TGTGTCGGGTA----GTACTG-CCA--CTTGTAATCCACGAA--TGAAGACAACA 454 *** ***** ***** *** ****** ** ** **** * * consensus_9908#0 TGAACGAACCATTACAGGAAAAAGATTCATCCATAGGCAATTGTATATCTTTTTGAAAAA 1560 consensus_9908#1 TCAGAAGATCACCATAGC------------------------------------------ 472 * * * ** * ** consensus_9908#0 AA 1562 consensus_9908#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||