These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 790 fasta sequence [TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCGGAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT-AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCA] [+] EMBL AK062709 [TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCGGAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCA AGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGCGAGTTCGGGCTT ] [+] EMBL AK062530 [ AACGGAGACCCCGAGGAAATGGAAGGCGGCGGAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCA] [+] EMBL OS1321680 [ CCCCGAGGAAATGGAAGGCGGCGGA NAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGA CACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTG ] [+] EMBL CA755374 [ GCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCANAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTTAAAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGAacg ] [+] EMBL OSS15826A [ CGCACCCGGCGATGNNGNCGCTGGCNTTCCTGCTGGGNCNGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGNGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCNGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTNTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTttt ] [+] EMBL AU174360 [ CGGCCCCGCCCCGACGGCTCCGTNGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTNTACAGCCACATCTCAAAGCCCTTNTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTT AAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAAaaaa ] consensusID : consensus_9916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTTAAAATAAGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCAGTATT] [+] EMBL CB097053 [GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTATGTTAAAATAAGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAATTTACCATCAGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9916#0 TGACGAGCAGAAATAAGTCCAGGAATCGAAACGGAGACCCCGAGGAAATGGAAGGCGGCG 60 consensus_9916#1 ------------------------------------------------------------ consensus_9916#0 GAGCAACCGCACCCGCCGCGCCGCACCCGGCGGTGGCGCCGCTGGCGTTCCTGCTGGGGA 120 consensus_9916#1 ------------------------------------------------------------ consensus_9916#0 AGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGG 180 consensus_9916#1 ------------------------------------------------------------ consensus_9916#0 AGCTCCTCTTCTCCCACCACCCCTCCAAGCCGGTGATCTCGTACACGCAGAGGACGTGGA 240 consensus_9916#1 ------------------------------------------------------------ consensus_9916#0 AGGCGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACG 300 consensus_9916#1 -GGGGGCGTCAGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACG 59 ** ******************************************************** consensus_9916#0 GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGT 360 consensus_9916#1 GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGAAGGGTTCGT 119 ************************************************************ consensus_9916#0 TTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGG 420 consensus_9916#1 TTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGG 179 ************************************************************ consensus_9916#0 TGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGA 480 consensus_9916#1 TGAAACAGATCACAAGAGTTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGA 239 ****************** ***************************************** consensus_9916#0 TGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAA 540 consensus_9916#1 TGGCAACAATCACAACCAGTCTACAGCCACATCTCAAAGCCCTTCTGAAGAAGATTTGAA 299 ************************************************************ consensus_9916#0 CGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTA 600 consensus_9916#1 CGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACTTCTGGATTTTTA 359 ************************************************************ consensus_9916#0 TGTTAAAATAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCT 660 consensus_9916#1 TGTTAAAATAA-------------GCCTATTATATCTGGGAATTGGGGCAACCTGCCCCT 406 *********** ************************************ consensus_9916#0 ACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGATAATGTCCATGC 720 consensus_9916#1 ACTAGTTTGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGAAAATGTCCATGC 466 ************************************************ *********** consensus_9916#0 GAGTTCGGGCTTGTTCATGCGCATGAGAGTTCAAACTTTGTTGCGTTAAACTTAATTTAA 780 consensus_9916#1 GAGTTCGGGCTTGTTCATGCGCATGACAGTTCAAACTTTGTTGCGTTAAACTTAATTTAA 526 ************************** ********************************* consensus_9916#0 TTTACCATCA----- 790 consensus_9916#1 TTTACCATCAGTATT 541 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||